Wall clock time and date at job start Tue Mar 31 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.43938 * 2 1 4 4 C 1.54215 * 109.43978 * 240.10881 * 2 1 3 5 5 C 1.45740 * 113.00442 * 160.41840 * 4 2 1 6 6 S 1.81931 * 113.29087 * 65.65172 * 5 4 2 7 7 O 1.42095 * 108.54355 * 39.13590 * 6 5 4 8 8 O 1.42104 * 108.54463 * 170.07298 * 6 5 4 9 9 C 1.79950 * 102.17372 * 284.58236 * 6 5 4 10 10 C 1.54087 * 111.02171 * 84.35046 * 9 6 5 11 11 N 1.44748 * 109.44356 * 119.93281 * 2 1 3 12 12 C 1.34769 * 119.58677 * 37.73069 * 11 2 1 13 13 O 1.21589 * 120.00233 * 355.88935 * 12 11 2 14 14 N 1.34776 * 120.00268 * 175.88477 * 12 11 2 15 15 C 1.46500 * 120.00379 * 185.17442 * 14 12 11 16 16 C 1.53000 * 109.47231 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47195 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47116 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00446 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47230 * 90.00168 * 22 20 18 24 24 H 1.48499 * 109.47324 * 210.00053 * 22 20 18 25 25 H 1.48499 * 109.47207 * 330.00341 * 22 20 18 26 26 H 1.09001 * 109.46493 * 284.26393 * 1 2 3 27 27 H 1.09002 * 109.46888 * 44.26587 * 1 2 3 28 28 H 1.08999 * 109.46691 * 164.26818 * 1 2 3 29 29 H 1.08999 * 108.77914 * 281.32565 * 4 2 1 30 30 H 1.08996 * 108.77595 * 39.62939 * 4 2 1 31 31 H 1.09008 * 108.72008 * 186.63273 * 5 4 2 32 32 H 1.08998 * 108.72366 * 304.66639 * 5 4 2 33 33 H 1.09002 * 109.19729 * 204.78653 * 9 6 5 34 34 H 1.09000 * 109.19730 * 324.11322 * 9 6 5 35 35 H 1.09001 * 108.54185 * 195.66992 * 10 9 6 36 36 H 1.09004 * 108.35807 * 78.51033 * 10 9 6 37 37 H 0.97000 * 119.99481 * 5.17061 * 14 12 11 38 38 H 1.09004 * 109.46610 * 299.99909 * 15 14 12 39 39 H 1.08996 * 109.47031 * 59.99816 * 15 14 12 40 40 H 1.09002 * 109.46615 * 299.99968 * 16 15 14 41 41 H 1.09001 * 109.47154 * 59.99486 * 16 15 14 42 42 H 1.09007 * 109.47074 * 299.99952 * 17 16 15 43 43 H 1.09001 * 109.47524 * 59.99670 * 17 16 15 44 44 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0433 -0.7247 -1.2608 5 6 3.4247 -0.3930 -1.5858 6 16 4.6159 -0.9698 -0.3375 7 8 4.2071 -2.2519 0.1187 8 8 5.9289 -0.8044 -0.8552 9 6 4.3737 0.2157 0.9945 10 6 3.1948 -0.1990 1.8959 11 7 2.0119 -0.6811 1.1829 12 6 1.3594 -1.7697 1.6362 13 8 0.3307 -2.1301 1.0974 14 7 1.8470 -2.4589 2.6867 15 6 1.2021 -3.7049 3.1084 16 6 1.9466 -4.2818 4.3141 17 6 1.2735 -5.5833 4.7542 18 6 2.0072 -6.1518 5.9414 19 1 2.8678 -5.6366 6.3417 20 6 1.5798 -7.3298 6.5165 21 7 2.2198 -7.8257 7.5530 22 14 0.0909 -8.2206 5.8245 23 1 0.5295 -9.1799 4.7793 24 1 -0.5964 -8.9574 6.9154 25 1 -0.8443 -7.2329 5.2287 26 1 -0.3632 0.2532 0.9960 27 1 -0.3633 0.7359 -0.7173 28 1 -0.3633 -0.9892 -0.2786 29 1 1.9690 -1.8005 -1.1019 30 1 1.4106 -0.4508 -2.1050 31 1 3.6768 -0.8452 -2.5451 32 1 3.5120 0.6895 -1.6787 33 1 5.2817 0.2706 1.5950 34 1 4.1665 1.1970 0.5677 35 1 2.9039 0.6587 2.5025 36 1 3.5362 -0.9877 2.5665 37 1 2.6251 -2.1300 3.1634 38 1 0.1669 -3.5030 3.3836 39 1 1.2268 -4.4224 2.2883 40 1 2.9820 -4.4834 4.0393 41 1 1.9216 -3.5640 5.1341 42 1 0.2380 -5.3820 5.0288 43 1 1.2990 -6.3009 3.9341 44 1 1.9193 -8.6547 7.9573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320786045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:49 Heat of formation + Delta-G solvation = -117.500283 kcal Electronic energy + Delta-G solvation = -25966.080110 eV Core-core repulsion = 22238.250141 eV Total energy + Delta-G solvation = -3727.829969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72372 -38.50788 -37.80124 -37.01309 -36.84296 -35.70621 -34.79243 -33.13834 -32.52421 -30.53259 -28.64423 -25.37850 -24.97661 -24.61634 -22.96882 -22.18739 -20.57987 -19.69346 -19.01147 -18.74408 -18.08982 -17.73859 -17.12490 -16.76783 -16.58208 -16.25030 -15.96689 -15.76481 -15.21309 -15.09212 -14.77626 -14.66042 -14.62861 -13.98672 -13.79911 -13.78088 -13.54451 -13.15814 -13.10943 -13.01851 -12.92328 -12.73223 -12.68631 -12.48124 -12.37780 -12.04775 -11.86101 -11.72628 -11.66756 -11.57851 -11.31882 -11.14772 -10.75518 -10.56486 -10.12362 -9.56943 -8.28844 -6.32524 -0.92532 1.37795 1.38456 1.51024 1.60087 1.83299 2.20112 2.37181 2.78770 2.84920 2.91876 3.06879 3.52220 3.58413 3.79316 3.93543 4.11939 4.14533 4.23859 4.26400 4.33238 4.43656 4.52584 4.55432 4.68069 4.75944 4.90522 4.90863 4.92665 4.95286 5.02329 5.04821 5.21839 5.37954 5.43988 5.57207 5.60615 5.67710 5.81192 5.87732 6.28399 6.74928 6.97646 7.32156 7.62284 8.87643 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.003123 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.399204 B = 8962.261920 C = 9686.443309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.140 0.860 4 C -0.125 4.125 5 C -0.579 4.579 6 S 2.400 3.600 7 O -0.978 6.978 8 O -0.989 6.989 9 C -0.613 4.613 10 C 0.116 3.884 11 N -0.630 5.630 12 C 0.708 3.292 13 O -0.614 6.614 14 N -0.736 5.736 15 C 0.147 3.853 16 C -0.100 4.100 17 C -0.011 4.011 18 C -0.530 4.530 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.247 1.247 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.017 0.983 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 26.822 -20.129 33.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.158 0.842 4 C -0.165 4.165 5 C -0.710 4.710 6 S 2.588 3.412 7 O -0.976 6.976 8 O -0.986 6.986 9 C -0.745 4.745 10 C -0.008 4.008 11 N -0.368 5.368 12 C 0.410 3.590 13 O -0.494 6.494 14 N -0.393 5.393 15 C 0.022 3.978 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.568 4.568 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.170 1.170 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.243 0.757 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.035 0.965 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.371 25.682 -20.436 32.849 hybrid contribution -0.285 -0.483 0.482 0.740 sum 1.086 25.198 -19.955 32.161 Atomic orbital electron populations 1.22150 0.93774 1.03149 1.01758 1.21400 0.96082 0.97108 0.81731 0.84206 1.20547 0.94263 1.01434 1.00247 1.28790 1.09580 1.15771 1.16873 1.08177 0.76036 0.77485 0.79529 1.93583 1.83673 1.39208 1.81088 1.93555 1.37331 1.87673 1.80054 1.30601 1.07773 1.19187 1.16943 1.21310 0.83137 1.02712 0.93666 1.47020 1.29645 1.29279 1.30856 1.15989 0.82796 0.79917 0.80262 1.90854 1.25926 1.71019 1.61624 1.45343 1.34649 1.25740 1.33576 1.21103 0.96344 0.84175 0.96136 1.21477 0.99186 0.97290 0.95866 1.19455 0.96344 0.94188 0.94909 1.21458 1.13835 1.07617 1.13899 0.94453 1.25978 1.00105 0.98144 0.94966 1.70061 1.42853 1.21837 1.24386 0.85695 0.79852 0.79093 0.78263 1.19442 1.20832 1.17047 0.93842 0.90134 0.92151 0.93270 0.86839 0.83886 0.80477 0.81086 0.79678 0.86278 0.90086 0.75686 0.92232 0.93358 0.92371 0.91464 0.95799 0.96498 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 7.81 71.98 0.56 -1.96 16 2 C 0.14 1.67 2.44 45.73 0.11 1.79 16 3 H 0.14 0.22 7.63 -2.39 -0.02 0.20 16 4 C -0.13 -1.54 4.66 28.78 0.13 -1.40 16 5 C -0.58 -4.15 5.61 69.76 0.39 -3.76 16 6 S 2.40 35.34 5.12 -56.49 -0.29 35.05 16 7 O -0.98 -25.88 16.55 -127.37 -2.11 -27.99 16 8 O -0.99 -21.73 18.09 -127.37 -2.30 -24.03 16 9 C -0.61 -2.80 5.87 72.35 0.42 -2.38 16 10 C 0.12 1.14 5.58 86.79 0.48 1.62 16 11 N -0.63 -10.88 1.95 -815.84 -1.59 -12.47 16 12 C 0.71 19.95 7.68 179.06 1.37 21.32 16 13 O -0.61 -21.49 13.07 -4.00 -0.05 -21.55 16 14 N -0.74 -21.10 5.43 -478.54 -2.60 -23.70 16 15 C 0.15 5.09 5.68 86.38 0.49 5.58 16 16 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 17 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 18 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 19 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 20 C 0.00 0.29 5.47 84.65 0.46 0.75 16 21 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 22 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 26 H 0.04 0.86 8.01 -2.39 -0.02 0.84 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.49 6.00 -2.39 -0.01 1.47 16 29 H 0.05 1.05 7.53 -2.39 -0.02 1.04 16 30 H 0.11 0.95 7.96 -2.39 -0.02 0.93 16 31 H 0.14 0.90 8.14 -2.40 -0.02 0.88 16 32 H 0.18 -0.50 8.08 -2.40 -0.02 -0.52 16 33 H 0.17 0.28 8.14 -2.46 -0.02 0.26 16 34 H 0.19 -0.95 7.92 -2.46 -0.02 -0.97 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 1.00 5.51 -2.39 -0.01 0.98 16 37 H 0.40 9.42 5.88 -92.71 -0.55 8.87 16 38 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.02 1.11 7.20 -2.38 -0.02 1.09 16 43 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -90.95 352.88 -1.40 -92.35 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.39 Total: 8.26 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.97 Total: -13.18 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -3.89 Total: -96.21 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -4.46 Total: -73.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Atomic # 16 Polarization: 35.34 SS G_CDS: -0.29 Total: 35.05 kcal Total: -90.95 -1.40 -92.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320786045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.152 kcal (2) G-P(sol) polarization free energy of solvation -90.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds