Wall clock time and date at job start Tue Mar 31 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 108.58121 * 2 1 4 4 C 1.53937 * 108.55411 * 117.89694 * 2 1 3 5 5 C 1.54775 * 112.87624 * 162.56108 * 4 2 1 6 6 S 1.79086 * 112.35609 * 41.24264 * 5 4 2 7 7 O 1.42104 * 108.81487 * 24.80176 * 6 5 4 8 8 O 1.42100 * 108.81376 * 156.47996 * 6 5 4 9 9 C 1.82270 * 100.44762 * 270.63957 * 6 5 4 10 10 C 1.44436 * 112.49169 * 77.58207 * 9 6 5 11 11 N 1.43389 * 108.62814 * 242.03322 * 2 1 3 12 12 C 1.34774 * 120.81359 * 318.34789 * 11 2 1 13 13 O 1.21581 * 120.00980 * 354.50546 * 12 11 2 14 14 N 1.34781 * 119.99197 * 174.50423 * 12 11 2 15 15 C 1.46505 * 119.99747 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47040 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47219 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99965 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00242 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47371 * 89.99996 * 22 20 18 24 24 H 1.48501 * 109.47090 * 210.00138 * 22 20 18 25 25 H 1.48498 * 109.46712 * 329.99795 * 22 20 18 26 26 H 1.08996 * 109.47558 * 187.99297 * 1 2 3 27 27 H 1.09004 * 109.46734 * 307.99231 * 1 2 3 28 28 H 1.08995 * 109.46899 * 67.99015 * 1 2 3 29 29 H 1.08998 * 108.72402 * 41.71282 * 4 2 1 30 30 H 1.09001 * 108.80434 * 283.46978 * 4 2 1 31 31 H 1.08998 * 108.88850 * 280.53106 * 5 4 2 32 32 H 1.08996 * 108.88889 * 161.95551 * 5 4 2 33 33 H 1.08997 * 108.88314 * 198.35676 * 9 6 5 34 34 H 1.08998 * 108.87987 * 316.91262 * 9 6 5 35 35 H 1.09003 * 109.18416 * 59.74200 * 10 9 6 36 36 H 1.09001 * 109.18600 * 178.99646 * 10 9 6 37 37 H 0.96997 * 120.00666 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.46899 * 299.99522 * 15 14 12 39 39 H 1.09000 * 109.47306 * 59.99745 * 15 14 12 40 40 H 1.08996 * 109.47222 * 299.99483 * 16 15 14 41 41 H 1.09005 * 109.46815 * 60.00042 * 16 15 14 42 42 H 1.09001 * 109.47716 * 300.00374 * 17 16 15 43 43 H 1.09000 * 109.46929 * 60.00101 * 17 16 15 44 44 H 0.97001 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8773 1.0332 0.0000 4 6 2.0198 -0.6828 1.2898 5 6 3.5011 -1.1248 1.2113 6 16 4.5359 0.0995 0.4130 7 8 3.9263 1.3756 0.5516 8 8 5.8779 -0.0843 0.8428 9 6 4.3971 -0.4328 -1.3247 10 6 3.1461 -0.0340 -1.9265 11 7 1.9880 -0.6372 -1.2001 12 6 1.3890 -1.7530 -1.6611 13 8 0.5146 -2.2881 -1.0075 14 7 1.7593 -2.2756 -2.8470 15 6 1.1079 -3.4882 -3.3486 16 6 1.7086 -3.8665 -4.7039 17 6 1.0287 -5.1332 -5.2274 18 6 1.6199 -5.5056 -6.5626 19 1 2.4027 -4.8996 -6.9944 20 6 1.1616 -6.6198 -7.2329 21 7 1.6779 -6.9451 -8.3980 22 14 -0.1928 -7.6676 -6.4864 23 1 -1.5147 -7.1606 -6.9343 24 1 -0.0281 -9.0764 -6.9261 25 1 -0.1122 -7.5987 -5.0052 26 1 -0.3634 -1.0176 0.1429 27 1 -0.3633 0.6326 0.8099 28 1 -0.3633 0.3851 -0.9527 29 1 1.4006 -1.5598 1.4783 30 1 1.9038 0.0124 2.1212 31 1 3.5617 -2.0577 0.6509 32 1 3.8722 -1.2959 2.2218 33 1 5.2174 0.0042 -1.8941 34 1 4.4773 -1.5189 -1.3684 35 1 3.0631 1.0524 -1.8936 36 1 3.1276 -0.3626 -2.9656 37 1 2.4566 -1.8486 -3.3688 38 1 1.2634 -4.3032 -2.6416 39 1 0.0394 -3.3057 -3.4634 40 1 1.5527 -3.0516 -5.4107 41 1 2.7772 -4.0490 -4.5895 42 1 1.1848 -5.9481 -4.5205 43 1 -0.0399 -4.9512 -5.3417 44 1 1.3552 -7.7287 -8.8698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320786048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:54 Heat of formation + Delta-G solvation = -90.544799 kcal Electronic energy + Delta-G solvation = -25785.158876 eV Core-core repulsion = 22058.497785 eV Total energy + Delta-G solvation = -3726.661091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87853 -37.87042 -36.95789 -36.42930 -35.80845 -34.61397 -33.18247 -32.06032 -31.46279 -29.64119 -27.11217 -24.90334 -24.09458 -23.46417 -21.98526 -20.72255 -19.50430 -19.19567 -18.09486 -17.56034 -16.88577 -16.66663 -16.40799 -16.10726 -15.72647 -15.32772 -14.92108 -14.47170 -14.41612 -14.10530 -13.88356 -13.65120 -13.40925 -13.18217 -12.74567 -12.66683 -12.52518 -12.43861 -12.15375 -12.06017 -11.99378 -11.91998 -11.86722 -11.38431 -11.13974 -10.93989 -10.86083 -10.71906 -10.16301 -10.00731 -9.80036 -9.62573 -9.28282 -9.24986 -8.79214 -8.60020 -6.10846 -4.09950 -0.39545 2.18848 2.37246 3.05559 3.21424 3.27715 3.35575 3.39150 3.50428 3.62660 4.07445 4.21110 4.27247 4.40169 4.45523 4.49859 4.64444 4.83672 5.12120 5.17150 5.20342 5.23252 5.26636 5.43224 5.44148 5.52969 5.59889 5.68963 5.83910 5.94683 6.07710 6.21990 6.38053 6.48735 6.61592 6.73786 6.76963 7.16694 7.30192 7.70213 7.82662 8.44791 8.52996 8.92569 9.51283 11.02349 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002834 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.019762 B = 9877.293157 C =10514.404738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.126 3.874 3 H 0.113 0.887 4 C -0.102 4.102 5 C -0.620 4.620 6 S 2.435 3.565 7 O -0.933 6.933 8 O -0.942 6.942 9 C -0.629 4.629 10 C 0.123 3.877 11 N -0.637 5.637 12 C 0.707 3.293 13 O -0.576 6.576 14 N -0.741 5.741 15 C 0.131 3.869 16 C -0.113 4.113 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.071 0.929 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.394 0.606 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 17.032 19.006 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.021 3.979 3 H 0.131 0.869 4 C -0.142 4.142 5 C -0.750 4.750 6 S 2.616 3.384 7 O -0.931 6.931 8 O -0.939 6.939 9 C -0.758 4.758 10 C 0.000 4.000 11 N -0.376 5.376 12 C 0.409 3.591 13 O -0.453 6.453 14 N -0.397 5.397 15 C 0.007 3.993 16 C -0.151 4.151 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.598 17.167 19.691 26.370 hybrid contribution -0.526 -1.326 -0.439 1.493 sum 3.072 15.841 19.252 25.120 Atomic orbital electron populations 1.22347 0.93121 1.05258 1.01813 1.20987 0.97217 0.97178 0.82530 0.86943 1.22052 0.90580 1.02825 0.98779 1.30433 1.11171 1.18798 1.14602 1.07507 0.75553 0.76933 0.78432 1.93553 1.77919 1.36868 1.84717 1.93618 1.33488 1.87036 1.79797 1.29324 1.06961 1.13932 1.25607 1.19925 0.82345 1.00379 0.97352 1.47445 1.34789 1.28341 1.27011 1.15900 0.81713 0.79790 0.81699 1.90844 1.34049 1.61883 1.58537 1.45590 1.43070 1.30733 1.20353 1.21555 0.97025 0.84420 0.96257 1.21712 1.00212 1.00256 0.92955 1.19492 0.95857 0.92467 0.97000 1.21082 1.21607 1.11173 1.02258 0.91046 1.25030 0.96504 0.97291 0.94637 1.69910 1.42880 1.26954 1.14393 0.86771 0.82545 0.79667 0.80280 1.20222 1.21356 1.18906 0.88564 0.92304 0.92439 0.89235 0.89568 0.85066 0.84619 0.83183 0.84500 0.88107 0.88332 0.77045 0.91871 0.91805 0.92141 0.92201 0.96311 0.96710 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 8.25 37.16 0.31 -1.35 16 2 C 0.13 1.11 2.05 -69.09 -0.14 0.97 16 3 H 0.11 0.89 5.76 -51.93 -0.30 0.59 16 4 C -0.10 -0.80 5.28 -25.31 -0.13 -0.94 16 5 C -0.62 -4.11 5.83 38.09 0.22 -3.89 16 6 S 2.43 17.47 5.20 -107.50 -0.56 16.92 16 7 O -0.93 -8.59 14.89 -57.79 -0.86 -9.45 16 8 O -0.94 -10.16 18.10 -57.79 -1.05 -11.21 16 9 C -0.63 -3.18 5.72 33.17 0.19 -2.99 16 10 C 0.12 0.75 5.28 -6.41 -0.03 0.72 16 11 N -0.64 -5.82 2.22 -175.75 -0.39 -6.21 16 12 C 0.71 8.93 7.87 -86.92 -0.68 8.24 16 13 O -0.58 -9.16 13.58 5.29 0.07 -9.09 16 14 N -0.74 -9.05 5.47 -65.22 -0.36 -9.41 16 15 C 0.13 2.00 5.67 -4.04 -0.02 1.97 16 16 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 17 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 18 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 19 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 22 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 26 H 0.10 1.19 5.59 -51.93 -0.29 0.90 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 0.83 7.74 -51.53 -0.40 0.43 16 32 H 0.14 0.69 8.14 -51.53 -0.42 0.27 16 33 H 0.15 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.14 0.61 7.85 -51.92 -0.41 0.20 16 35 H 0.10 0.48 7.63 -51.93 -0.40 0.08 16 36 H 0.10 0.49 5.94 -51.93 -0.31 0.18 16 37 H 0.39 3.77 6.07 -40.82 -0.25 3.52 16 38 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -36.41 350.80 -9.64 -46.05 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.91 Total: -0.38 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.98 Total: -12.63 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.03 Total: -42.17 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.83 Total: -29.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 17.47 SS G_CDS: -0.56 Total: 16.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.41 -9.64 -46.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320786048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.491 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds