Wall clock time and date at job start Tue Mar 31 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 108.58121 * 2 1 4 4 C 1.53937 * 108.55411 * 117.89694 * 2 1 3 5 5 C 1.54775 * 112.87624 * 162.56108 * 4 2 1 6 6 S 1.79086 * 112.35609 * 41.24264 * 5 4 2 7 7 O 1.42104 * 108.81487 * 24.80176 * 6 5 4 8 8 O 1.42100 * 108.81376 * 156.47996 * 6 5 4 9 9 C 1.82270 * 100.44762 * 270.63957 * 6 5 4 10 10 C 1.44436 * 112.49169 * 77.58207 * 9 6 5 11 11 N 1.43389 * 108.62814 * 242.03322 * 2 1 3 12 12 C 1.34774 * 120.81359 * 318.34789 * 11 2 1 13 13 O 1.21581 * 120.00980 * 354.50546 * 12 11 2 14 14 N 1.34781 * 119.99197 * 174.50423 * 12 11 2 15 15 C 1.46505 * 119.99747 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47040 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47219 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99965 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00242 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47371 * 89.99996 * 22 20 18 24 24 H 1.48501 * 109.47090 * 210.00138 * 22 20 18 25 25 H 1.48498 * 109.46712 * 329.99795 * 22 20 18 26 26 H 1.08996 * 109.47558 * 187.99297 * 1 2 3 27 27 H 1.09004 * 109.46734 * 307.99231 * 1 2 3 28 28 H 1.08995 * 109.46899 * 67.99015 * 1 2 3 29 29 H 1.08998 * 108.72402 * 41.71282 * 4 2 1 30 30 H 1.09001 * 108.80434 * 283.46978 * 4 2 1 31 31 H 1.08998 * 108.88850 * 280.53106 * 5 4 2 32 32 H 1.08996 * 108.88889 * 161.95551 * 5 4 2 33 33 H 1.08997 * 108.88314 * 198.35676 * 9 6 5 34 34 H 1.08998 * 108.87987 * 316.91262 * 9 6 5 35 35 H 1.09003 * 109.18416 * 59.74200 * 10 9 6 36 36 H 1.09001 * 109.18600 * 178.99646 * 10 9 6 37 37 H 0.96997 * 120.00666 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.46899 * 299.99522 * 15 14 12 39 39 H 1.09000 * 109.47306 * 59.99745 * 15 14 12 40 40 H 1.08996 * 109.47222 * 299.99483 * 16 15 14 41 41 H 1.09005 * 109.46815 * 60.00042 * 16 15 14 42 42 H 1.09001 * 109.47716 * 300.00374 * 17 16 15 43 43 H 1.09000 * 109.46929 * 60.00101 * 17 16 15 44 44 H 0.97001 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8773 1.0332 0.0000 4 6 2.0198 -0.6828 1.2898 5 6 3.5011 -1.1248 1.2113 6 16 4.5359 0.0995 0.4130 7 8 3.9263 1.3756 0.5516 8 8 5.8779 -0.0843 0.8428 9 6 4.3971 -0.4328 -1.3247 10 6 3.1461 -0.0340 -1.9265 11 7 1.9880 -0.6372 -1.2001 12 6 1.3890 -1.7530 -1.6611 13 8 0.5146 -2.2881 -1.0075 14 7 1.7593 -2.2756 -2.8470 15 6 1.1079 -3.4882 -3.3486 16 6 1.7086 -3.8665 -4.7039 17 6 1.0287 -5.1332 -5.2274 18 6 1.6199 -5.5056 -6.5626 19 1 2.4027 -4.8996 -6.9944 20 6 1.1616 -6.6198 -7.2329 21 7 1.6779 -6.9451 -8.3980 22 14 -0.1928 -7.6676 -6.4864 23 1 -1.5147 -7.1606 -6.9343 24 1 -0.0281 -9.0764 -6.9261 25 1 -0.1122 -7.5987 -5.0052 26 1 -0.3634 -1.0176 0.1429 27 1 -0.3633 0.6326 0.8099 28 1 -0.3633 0.3851 -0.9527 29 1 1.4006 -1.5598 1.4783 30 1 1.9038 0.0124 2.1212 31 1 3.5617 -2.0577 0.6509 32 1 3.8722 -1.2959 2.2218 33 1 5.2174 0.0042 -1.8941 34 1 4.4773 -1.5189 -1.3684 35 1 3.0631 1.0524 -1.8936 36 1 3.1276 -0.3626 -2.9656 37 1 2.4566 -1.8486 -3.3688 38 1 1.2634 -4.3032 -2.6416 39 1 0.0394 -3.3057 -3.4634 40 1 1.5527 -3.0516 -5.4107 41 1 2.7772 -4.0490 -4.5895 42 1 1.1848 -5.9481 -4.5205 43 1 -0.0399 -4.9512 -5.3417 44 1 1.3552 -7.7287 -8.8698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320786048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:53 Heat of formation + Delta-G solvation = -117.927819 kcal Electronic energy + Delta-G solvation = -25786.346293 eV Core-core repulsion = 22058.497785 eV Total energy + Delta-G solvation = -3727.848508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72744 -38.66112 -37.73496 -37.08680 -36.91892 -35.65656 -34.69772 -33.14745 -32.62140 -30.49620 -28.67053 -25.65580 -24.82035 -24.59735 -23.04436 -22.18846 -20.58797 -19.77878 -19.00946 -18.73771 -18.13948 -17.31876 -17.22998 -16.87503 -16.61835 -16.33521 -16.14429 -15.81198 -15.29945 -15.15222 -14.76150 -14.62756 -14.44500 -14.07280 -13.87603 -13.74029 -13.67734 -13.26438 -13.20381 -13.04423 -12.75255 -12.68493 -12.66679 -12.59549 -12.54429 -12.08379 -11.84625 -11.74037 -11.57372 -11.47972 -11.31210 -11.26918 -10.75283 -10.67217 -10.20627 -9.67646 -8.28621 -6.32259 -0.93897 1.37648 1.39395 1.50636 1.52430 1.72288 2.11187 2.36972 2.68039 2.79765 2.94934 3.07558 3.53094 3.68154 3.84924 3.86786 4.03463 4.08604 4.14881 4.21756 4.25403 4.52947 4.54478 4.66645 4.69567 4.80668 4.83045 4.86870 4.92853 4.93339 4.97382 5.05520 5.12205 5.30193 5.43569 5.56977 5.58454 5.67215 5.72559 5.90613 6.28454 6.76137 6.93972 7.32803 7.59051 8.87739 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002834 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.019762 B = 9877.293157 C =10514.404738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 H 0.127 0.873 4 C -0.104 4.104 5 C -0.620 4.620 6 S 2.445 3.555 7 O -0.956 6.956 8 O -0.981 6.981 9 C -0.618 4.618 10 C 0.112 3.888 11 N -0.630 5.630 12 C 0.705 3.295 13 O -0.612 6.612 14 N -0.734 5.734 15 C 0.146 3.854 16 C -0.100 4.100 17 C -0.012 4.012 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.946 3.054 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.247 1.247 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.181 0.819 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.408 0.592 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.021 0.979 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 17.834 20.081 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.145 0.855 4 C -0.144 4.144 5 C -0.750 4.750 6 S 2.630 3.370 7 O -0.953 6.953 8 O -0.978 6.978 9 C -0.749 4.749 10 C -0.010 4.010 11 N -0.368 5.368 12 C 0.407 3.593 13 O -0.492 6.492 14 N -0.392 5.392 15 C 0.021 3.979 16 C -0.138 4.138 17 C -0.050 4.050 18 C -0.567 4.567 19 H 0.057 0.943 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.770 3.230 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.170 1.170 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.198 0.802 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.246 0.754 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.602 18.033 20.801 27.764 hybrid contribution -0.477 -1.504 -0.823 1.780 sum 3.125 16.529 19.978 26.117 Atomic orbital electron populations 1.22277 0.94132 1.03857 1.01989 1.21133 0.96521 0.97917 0.82826 0.85526 1.22039 0.91006 1.02526 0.98846 1.30412 1.10151 1.18671 1.15762 1.07006 0.74393 0.76390 0.79204 1.93516 1.77962 1.38305 1.85531 1.93573 1.35597 1.87499 1.81170 1.29208 1.07560 1.14880 1.23286 1.20282 0.81350 1.01501 0.97846 1.47450 1.35134 1.27107 1.27073 1.16009 0.81490 0.80392 0.81403 1.90839 1.35702 1.63215 1.59460 1.45300 1.43327 1.29970 1.20582 1.21139 0.96464 0.85510 0.94745 1.21475 1.00128 0.98068 0.94111 1.19460 0.96148 0.94892 0.94507 1.21477 1.20581 1.10463 1.04173 0.94334 1.25975 0.99232 0.98981 0.95049 1.70058 1.44977 1.27955 1.16209 0.85716 0.79378 0.77601 0.80323 1.19352 1.21212 1.17020 0.91172 0.90563 0.93317 0.90821 0.88000 0.84647 0.83275 0.80182 0.83382 0.86235 0.86632 0.75354 0.92520 0.92740 0.91775 0.91596 0.96090 0.96315 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 8.25 71.98 0.59 -2.54 16 2 C 0.12 1.93 2.05 45.88 0.09 2.02 16 3 H 0.13 1.70 5.76 -2.39 -0.01 1.69 16 4 C -0.10 -1.49 5.28 31.52 0.17 -1.33 16 5 C -0.62 -7.16 5.83 72.59 0.42 -6.73 16 6 S 2.45 30.31 5.20 -56.49 -0.29 30.02 16 7 O -0.96 -15.75 14.89 -127.41 -1.90 -17.64 16 8 O -0.98 -19.92 18.10 -127.41 -2.31 -22.22 16 9 C -0.62 -4.18 5.72 69.40 0.40 -3.79 16 10 C 0.11 0.98 5.28 83.23 0.44 1.42 16 11 N -0.63 -10.12 2.22 -828.21 -1.84 -11.96 16 12 C 0.71 16.63 7.87 179.05 1.41 18.04 16 13 O -0.61 -19.14 13.58 -3.97 -0.05 -19.19 16 14 N -0.73 -16.29 5.47 -478.51 -2.62 -18.90 16 15 C 0.15 4.20 5.67 86.38 0.49 4.69 16 16 C -0.10 -3.33 5.27 30.59 0.16 -3.16 16 17 C -0.01 -0.53 4.04 29.85 0.12 -0.40 16 18 C -0.53 -29.16 9.66 25.60 0.25 -28.91 16 19 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 20 C 0.00 0.25 5.47 84.65 0.46 0.72 16 21 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 22 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 26 H 0.07 1.75 5.59 -2.39 -0.01 1.74 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.31 7.84 -2.39 -0.02 1.30 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.14 1.46 7.74 -2.64 -0.02 1.44 16 32 H 0.15 1.29 8.14 -2.64 -0.02 1.27 16 33 H 0.18 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.15 0.79 7.85 -2.39 -0.02 0.77 16 35 H 0.12 0.69 7.63 -2.39 -0.02 0.67 16 36 H 0.12 0.69 5.94 -2.39 -0.01 0.68 16 37 H 0.41 6.56 6.07 -92.71 -0.56 5.99 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 43 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.76 350.80 -1.44 -81.20 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.38 Total: 11.53 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.00 Total: -19.97 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.16 Total: -89.12 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -4.26 Total: -59.06 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: 30.31 SS G_CDS: -0.29 Total: 30.02 kcal Total: -79.76 -1.44 -81.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320786048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.731 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds