Wall clock time and date at job start Tue Mar 31 2020 13:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21276 * 119.99940 * 2 1 4 4 N 1.34778 * 119.99896 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63035 * 354.36447 * 4 2 1 6 6 C 1.53190 * 108.77681 * 233.63150 * 5 4 2 7 7 C 1.53040 * 109.31474 * 305.37033 * 6 5 4 8 8 C 1.53038 * 109.54073 * 61.35932 * 7 6 5 9 9 H 1.09006 * 109.49222 * 58.59487 * 8 7 6 10 10 C 1.52993 * 109.52404 * 178.66864 * 8 7 6 11 11 N 1.46500 * 109.47411 * 184.92260 * 10 8 7 12 12 S 1.65601 * 120.00559 * 165.00056 * 11 10 8 13 13 O 1.42094 * 104.28000 * 181.07253 * 12 11 10 14 14 O 1.42103 * 104.27517 * 308.93053 * 12 11 10 15 15 C 1.81401 * 104.44768 * 64.99915 * 12 11 10 16 16 C 1.53001 * 109.47040 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.46987 * 179.97438 * 16 15 12 18 18 H 1.07994 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99741 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47197 * 90.00066 * 21 19 17 23 23 H 1.48507 * 109.47272 * 210.00099 * 21 19 17 24 24 H 1.48494 * 109.47008 * 330.00078 * 21 19 17 25 25 C 1.46927 * 120.63211 * 174.39149 * 4 2 1 26 26 H 1.09003 * 109.47183 * 184.88239 * 1 2 3 27 27 H 1.08996 * 109.47112 * 304.88155 * 1 2 3 28 28 H 1.08996 * 109.47329 * 64.88066 * 1 2 3 29 29 H 1.09001 * 109.58717 * 353.42157 * 5 4 2 30 30 H 1.08999 * 109.58622 * 113.84944 * 5 4 2 31 31 H 1.08998 * 109.49850 * 65.32055 * 6 5 4 32 32 H 1.09006 * 109.49746 * 185.41486 * 6 5 4 33 33 H 1.09010 * 109.45409 * 301.33865 * 7 6 5 34 34 H 1.09003 * 109.46132 * 181.38682 * 7 6 5 35 35 H 1.09004 * 109.47312 * 304.92391 * 10 8 7 36 36 H 1.09004 * 109.47271 * 64.91860 * 10 8 7 37 37 H 0.97006 * 119.99384 * 345.00187 * 11 10 8 38 38 H 1.08997 * 109.46899 * 300.00077 * 15 12 11 39 39 H 1.08999 * 109.46716 * 59.99992 * 15 12 11 40 40 H 1.08997 * 109.47604 * 300.00612 * 16 15 12 41 41 H 1.09003 * 109.46659 * 60.00126 * 16 15 12 42 42 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58585 * 6.58188 * 25 4 2 44 44 H 1.09000 * 109.70612 * 246.22491 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4445 0.1252 6 6 2.0725 -3.2382 1.2865 7 6 3.5805 -3.3810 1.0685 8 6 4.2273 -1.9943 1.0410 9 1 4.0231 -1.4790 1.9796 10 6 5.7391 -2.1388 0.8562 11 7 6.3706 -0.8200 0.9476 12 16 8.0088 -0.6990 1.1575 13 8 8.2510 0.6995 1.2258 14 8 8.2835 -1.5451 2.2656 15 6 8.7125 -1.3934 -0.3635 16 6 10.2397 -1.3369 -0.2909 17 6 10.8243 -1.9143 -1.5542 18 1 10.1718 -2.2841 -2.3312 19 6 12.1921 -1.9694 -1.7183 20 7 12.9867 -1.5185 -0.7722 21 14 12.9168 -2.6845 -3.2845 22 1 13.0894 -1.6039 -4.2885 23 1 14.2360 -3.2971 -2.9849 24 1 12.0012 -3.7209 -3.8253 25 6 3.6448 -1.1865 -0.1230 26 1 -0.3634 -1.0240 0.0875 27 1 -0.3633 0.5877 0.8430 28 1 -0.3634 0.4362 -0.9304 29 1 0.4108 -2.2547 0.3242 30 1 1.5687 -3.0129 -0.7991 31 1 1.8885 -2.7113 2.2227 32 1 1.6158 -4.2271 1.3292 33 1 3.7640 -3.8862 0.1201 34 1 4.0111 -3.9665 1.8808 35 1 6.1399 -2.7882 1.6346 36 1 5.9458 -2.5736 -0.1217 37 1 5.8290 -0.0176 0.8851 38 1 8.3916 -2.4293 -0.4723 39 1 8.3681 -0.8144 -1.2204 40 1 10.5603 -0.3008 -0.1822 41 1 10.5843 -1.9156 0.5661 42 1 13.9490 -1.5577 -0.8876 43 1 4.0280 -0.1667 -0.0879 44 1 3.9278 -1.6508 -1.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322471790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:38 Heat of formation + Delta-G solvation = -123.886509 kcal Electronic energy + Delta-G solvation = -25064.375094 eV Core-core repulsion = 21336.268197 eV Total energy + Delta-G solvation = -3728.106896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.56520 -38.13322 -36.56066 -35.65379 -35.36274 -33.88132 -33.08530 -31.57663 -31.14950 -29.89381 -25.82996 -25.61988 -25.53411 -22.52817 -21.69543 -20.92937 -19.35969 -18.85671 -17.64414 -17.31693 -16.54689 -16.37589 -16.06849 -15.79591 -15.40146 -15.08357 -14.72876 -14.57993 -14.46316 -13.75062 -13.70355 -13.60202 -13.53121 -13.23535 -12.98154 -12.52448 -12.44821 -12.14979 -11.78901 -11.71143 -11.56404 -11.48923 -11.46906 -11.27707 -11.08009 -11.00579 -10.94870 -10.83338 -10.41109 -10.37184 -10.06539 -9.78796 -9.48281 -9.01231 -8.99768 -8.49745 -6.11828 -4.17419 0.82250 2.31061 2.63087 3.16845 3.26361 3.32473 3.34980 4.12344 4.21163 4.28028 4.38573 4.43888 4.44619 4.56368 4.65058 4.75266 4.83536 4.95621 5.01273 5.10869 5.11720 5.23354 5.31025 5.32368 5.38261 5.47165 5.48280 5.60428 5.62922 5.67545 5.70777 5.80201 5.94179 6.07132 6.13601 6.50123 7.04590 7.09746 7.31470 7.37791 7.81100 7.85121 8.18311 8.86036 9.47277 10.99252 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.002786 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.475269 B =10047.178011 C =10293.212156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.510 3.490 3 O -0.544 6.544 4 N -0.614 5.614 5 C 0.100 3.900 6 C -0.135 4.135 7 C -0.117 4.117 8 C -0.108 4.108 9 H 0.084 0.916 10 C 0.122 3.878 11 N -1.130 6.130 12 S 2.593 3.407 13 O -0.967 6.967 14 O -0.968 6.968 15 C -0.589 4.589 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.111 3.889 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.413 0.587 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.095 0.905 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.821 -5.225 1.750 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.348 5.348 5 C -0.022 4.022 6 C -0.173 4.173 7 C -0.155 4.155 8 C -0.128 4.128 9 H 0.102 0.898 10 C -0.005 4.005 11 N -0.888 5.888 12 S 2.691 3.309 13 O -0.957 6.957 14 O -0.958 6.958 15 C -0.723 4.723 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.012 4.012 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.809 -4.429 2.612 27.298 hybrid contribution 0.105 -0.433 -1.499 1.563 sum -26.704 -4.862 1.113 27.166 Atomic orbital electron populations 1.22040 0.91933 1.04501 1.05384 1.20831 0.90649 0.83110 0.75471 1.90746 1.70576 1.31034 1.49769 1.48175 1.07438 1.06227 1.72960 1.21937 0.96796 0.84343 0.99173 1.21917 0.96200 1.00565 0.98604 1.21559 0.94801 0.96028 1.03132 1.21717 0.94105 0.97106 0.99914 0.89753 1.21281 0.92386 0.84560 1.02291 1.55853 1.27513 1.13080 1.92312 1.05530 0.72609 0.74753 0.78038 1.93559 1.83478 1.31061 1.87598 1.93534 1.83309 1.69653 1.49281 1.30441 1.11774 1.11682 1.18378 1.18963 0.83310 0.99092 0.99789 1.21002 0.91526 1.41365 1.02062 0.92057 1.25073 0.97198 0.95342 0.96908 1.69958 1.04029 1.45874 1.32993 0.86468 0.78552 0.79256 0.82985 1.20475 1.21016 1.19778 1.21718 0.78955 1.02581 0.97935 0.89910 0.88808 0.88663 0.89066 0.91014 0.91306 0.90271 0.91047 0.90733 0.89661 0.91404 0.75320 0.86352 0.86079 0.94821 0.94818 0.92527 0.88644 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.11 36.01 0.36 -0.60 16 2 C 0.51 5.04 7.79 -10.98 -0.09 4.95 16 3 O -0.54 -8.01 16.52 5.56 0.09 -7.92 16 4 N -0.61 -4.99 2.97 -172.77 -0.51 -5.50 16 5 C 0.10 0.46 6.31 -3.71 -0.02 0.44 16 6 C -0.13 -0.63 6.08 -26.61 -0.16 -0.79 16 7 C -0.12 -0.72 5.17 -26.69 -0.14 -0.86 16 8 C -0.11 -0.92 2.44 -90.51 -0.22 -1.14 16 9 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 10 C 0.12 1.26 5.53 -4.05 -0.02 1.24 16 11 N -1.13 -14.71 5.77 -10.61 -0.06 -14.77 16 12 S 2.59 46.61 5.46 -107.50 -0.59 46.02 16 13 O -0.97 -20.66 18.08 -57.54 -1.04 -21.70 16 14 O -0.97 -20.07 17.50 -57.54 -1.01 -21.08 16 15 C -0.59 -11.16 6.01 37.16 0.22 -10.94 16 16 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C 0.11 1.02 5.53 -3.71 -0.02 1.00 16 26 H 0.08 0.23 5.14 -51.93 -0.27 -0.04 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.24 5.14 -51.93 -0.27 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.97 7.45 -34.47 -0.26 4.72 16 38 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 39 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.10 1.08 5.92 -51.93 -0.31 0.77 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -38.26 366.33 -9.47 -47.74 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.96 Total: 0.66 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.64 Total: -19.30 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.16 Total: -46.16 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.96 Total: -50.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.59 Total: 46.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.26 -9.47 -47.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322471790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.149 kcal (2) G-P(sol) polarization free energy of solvation -38.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds