Wall clock time and date at job start Tue Mar 31 2020 13:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21276 * 119.99940 * 2 1 4 4 N 1.34778 * 119.99896 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63035 * 354.36447 * 4 2 1 6 6 C 1.53190 * 108.77681 * 233.63150 * 5 4 2 7 7 C 1.53040 * 109.31474 * 305.37033 * 6 5 4 8 8 C 1.53038 * 109.54073 * 61.35932 * 7 6 5 9 9 H 1.09006 * 109.49222 * 58.59487 * 8 7 6 10 10 C 1.52993 * 109.52404 * 178.66864 * 8 7 6 11 11 N 1.46500 * 109.47411 * 184.92260 * 10 8 7 12 12 S 1.65601 * 120.00559 * 165.00056 * 11 10 8 13 13 O 1.42094 * 104.28000 * 181.07253 * 12 11 10 14 14 O 1.42103 * 104.27517 * 308.93053 * 12 11 10 15 15 C 1.81401 * 104.44768 * 64.99915 * 12 11 10 16 16 C 1.53001 * 109.47040 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.46987 * 179.97438 * 16 15 12 18 18 H 1.07994 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99741 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47197 * 90.00066 * 21 19 17 23 23 H 1.48507 * 109.47272 * 210.00099 * 21 19 17 24 24 H 1.48494 * 109.47008 * 330.00078 * 21 19 17 25 25 C 1.46927 * 120.63211 * 174.39149 * 4 2 1 26 26 H 1.09003 * 109.47183 * 184.88239 * 1 2 3 27 27 H 1.08996 * 109.47112 * 304.88155 * 1 2 3 28 28 H 1.08996 * 109.47329 * 64.88066 * 1 2 3 29 29 H 1.09001 * 109.58717 * 353.42157 * 5 4 2 30 30 H 1.08999 * 109.58622 * 113.84944 * 5 4 2 31 31 H 1.08998 * 109.49850 * 65.32055 * 6 5 4 32 32 H 1.09006 * 109.49746 * 185.41486 * 6 5 4 33 33 H 1.09010 * 109.45409 * 301.33865 * 7 6 5 34 34 H 1.09003 * 109.46132 * 181.38682 * 7 6 5 35 35 H 1.09004 * 109.47312 * 304.92391 * 10 8 7 36 36 H 1.09004 * 109.47271 * 64.91860 * 10 8 7 37 37 H 0.97006 * 119.99384 * 345.00187 * 11 10 8 38 38 H 1.08997 * 109.46899 * 300.00077 * 15 12 11 39 39 H 1.08999 * 109.46716 * 59.99992 * 15 12 11 40 40 H 1.08997 * 109.47604 * 300.00612 * 16 15 12 41 41 H 1.09003 * 109.46659 * 60.00126 * 16 15 12 42 42 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58585 * 6.58188 * 25 4 2 44 44 H 1.09000 * 109.70612 * 246.22491 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4445 0.1252 6 6 2.0725 -3.2382 1.2865 7 6 3.5805 -3.3810 1.0685 8 6 4.2273 -1.9943 1.0410 9 1 4.0231 -1.4790 1.9796 10 6 5.7391 -2.1388 0.8562 11 7 6.3706 -0.8200 0.9476 12 16 8.0088 -0.6990 1.1575 13 8 8.2510 0.6995 1.2258 14 8 8.2835 -1.5451 2.2656 15 6 8.7125 -1.3934 -0.3635 16 6 10.2397 -1.3369 -0.2909 17 6 10.8243 -1.9143 -1.5542 18 1 10.1718 -2.2841 -2.3312 19 6 12.1921 -1.9694 -1.7183 20 7 12.9867 -1.5185 -0.7722 21 14 12.9168 -2.6845 -3.2845 22 1 13.0894 -1.6039 -4.2885 23 1 14.2360 -3.2971 -2.9849 24 1 12.0012 -3.7209 -3.8253 25 6 3.6448 -1.1865 -0.1230 26 1 -0.3634 -1.0240 0.0875 27 1 -0.3633 0.5877 0.8430 28 1 -0.3634 0.4362 -0.9304 29 1 0.4108 -2.2547 0.3242 30 1 1.5687 -3.0129 -0.7991 31 1 1.8885 -2.7113 2.2227 32 1 1.6158 -4.2271 1.3292 33 1 3.7640 -3.8862 0.1201 34 1 4.0111 -3.9665 1.8808 35 1 6.1399 -2.7882 1.6346 36 1 5.9458 -2.5736 -0.1217 37 1 5.8290 -0.0176 0.8851 38 1 8.3916 -2.4293 -0.4723 39 1 8.3681 -0.8144 -1.2204 40 1 10.5603 -0.3008 -0.1822 41 1 10.5843 -1.9156 0.5661 42 1 13.9490 -1.5577 -0.8876 43 1 4.0280 -0.1667 -0.0879 44 1 3.9278 -1.6508 -1.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322471790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:37 Heat of formation + Delta-G solvation = -153.735246 kcal Electronic energy + Delta-G solvation = -25065.669432 eV Core-core repulsion = 21336.268197 eV Total energy + Delta-G solvation = -3729.401235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22558 -38.89693 -38.15450 -37.03600 -36.47268 -35.89260 -33.79485 -33.12462 -32.19023 -30.46346 -27.59252 -26.56709 -26.14553 -23.60608 -23.10517 -21.65238 -20.25941 -19.93698 -19.08397 -18.38293 -18.02468 -17.41304 -17.14961 -16.91134 -16.52781 -16.44118 -16.03887 -15.70515 -15.13355 -15.11020 -14.53153 -14.40192 -14.31876 -14.18687 -14.02876 -13.71420 -13.46851 -13.28466 -13.20480 -13.09475 -12.99093 -12.93031 -12.77971 -12.48221 -12.24632 -12.12663 -12.08854 -11.83573 -11.73427 -11.62533 -11.46173 -11.18064 -10.78280 -10.64709 -10.35573 -9.64334 -8.25835 -6.39988 -0.68126 1.41149 1.43191 1.54224 1.60419 1.85019 2.05824 2.38307 2.80827 3.07756 3.25583 3.60376 3.70082 3.81351 3.90891 3.99867 4.09107 4.13984 4.14694 4.37343 4.40110 4.49218 4.56863 4.63810 4.68548 4.74923 4.77354 4.85230 4.88472 4.94395 5.10122 5.17287 5.19398 5.27607 5.28710 5.31537 5.48495 5.54270 5.68676 6.02531 6.06445 6.44173 6.74091 7.16713 7.30310 8.86610 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.002786 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.475269 B =10047.178011 C =10293.212156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.498 3.502 3 O -0.606 6.606 4 N -0.611 5.611 5 C 0.094 3.906 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.098 4.098 9 H 0.068 0.932 10 C 0.109 3.891 11 N -1.113 6.113 12 S 2.619 3.381 13 O -1.005 7.005 14 O -0.997 6.997 15 C -0.584 4.584 16 C 0.019 3.981 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.255 1.255 25 C 0.106 3.894 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.419 0.581 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.003 0.997 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.520 -7.738 0.013 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.289 3.711 3 O -0.488 6.488 4 N -0.344 5.344 5 C -0.026 4.026 6 C -0.169 4.169 7 C -0.155 4.155 8 C -0.119 4.119 9 H 0.086 0.914 10 C -0.017 4.017 11 N -0.875 5.875 12 S 2.716 3.284 13 O -0.995 6.995 14 O -0.986 6.986 15 C -0.717 4.717 16 C -0.020 4.020 17 C -0.577 4.577 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.799 3.201 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.179 1.179 25 C -0.017 4.017 26 H 0.133 0.867 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.255 0.745 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.022 0.978 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -29.538 -6.988 0.873 30.366 hybrid contribution 0.873 0.318 -0.914 1.303 sum -28.665 -6.670 -0.040 29.431 Atomic orbital electron populations 1.22062 0.88320 1.06731 1.05881 1.21706 0.92488 0.82609 0.74336 1.90714 1.72072 1.33263 1.52796 1.48335 1.07106 1.07273 1.71646 1.22259 0.97737 0.82648 0.99999 1.21920 0.95082 1.01793 0.98108 1.21603 0.95763 0.94097 1.04026 1.21626 0.92785 0.98656 0.98824 0.91363 1.21671 0.93482 0.82836 1.03716 1.55393 1.25318 1.14850 1.91927 1.04475 0.73513 0.73238 0.77204 1.93500 1.84821 1.33279 1.87938 1.93493 1.84495 1.70131 1.50529 1.30306 1.07164 1.14260 1.19941 1.18832 0.87973 0.96674 0.98517 1.21529 0.92231 1.40984 1.02935 0.90387 1.26146 0.97903 0.95714 1.00635 1.70112 1.04410 1.47497 1.35534 0.85294 0.77736 0.78806 0.78296 1.19805 1.20891 1.17850 1.21684 0.80097 1.01187 0.98780 0.86718 0.88520 0.87927 0.86594 0.89348 0.92245 0.87744 0.89645 0.90552 0.89870 0.88870 0.74460 0.83387 0.83969 0.97836 0.97349 0.92422 0.91467 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.11 71.24 0.72 -0.73 16 2 C 0.50 9.45 7.79 87.66 0.68 10.13 16 3 O -0.61 -18.51 16.52 -3.02 -0.05 -18.56 16 4 N -0.61 -8.85 2.97 -818.91 -2.43 -11.28 16 5 C 0.09 0.52 6.31 86.36 0.54 1.07 16 6 C -0.13 -0.77 6.08 30.67 0.19 -0.58 16 7 C -0.12 -1.10 5.17 30.62 0.16 -0.94 16 8 C -0.10 -1.53 2.44 -10.72 -0.03 -1.55 16 9 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 10 C 0.11 2.08 5.53 86.38 0.48 2.56 16 11 N -1.11 -28.54 5.77 -187.49 -1.08 -29.63 16 12 S 2.62 95.40 5.46 -56.49 -0.31 95.09 16 13 O -1.01 -44.38 18.08 -127.65 -2.31 -46.69 16 14 O -1.00 -42.04 17.50 -127.65 -2.23 -44.27 16 15 C -0.58 -21.80 6.01 71.98 0.43 -21.37 16 16 C 0.02 0.99 4.98 29.85 0.15 1.14 16 17 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 18 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 21 Si 0.98 43.23 29.54 68.60 2.03 45.25 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 25 C 0.11 1.82 5.53 86.36 0.48 2.30 16 26 H 0.11 0.16 5.14 -2.39 -0.01 0.15 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.07 5.14 -2.39 -0.01 0.05 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.67 7.69 -2.38 -0.02 1.65 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.42 10.21 7.45 -96.74 -0.72 9.49 16 38 H 0.15 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 43 H 0.07 1.56 5.92 -2.38 -0.01 1.54 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -86.99 366.33 -1.33 -88.32 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.28 Total: 16.22 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 4.50 Total: -37.33 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -3.23 Total: -98.03 kcal Atomic # 8 Polarization: -104.93 SS G_CDS: -4.59 Total: -109.52 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 95.40 SS G_CDS: -0.31 Total: 95.09 kcal Total: -86.99 -1.33 -88.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322471790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.420 kcal (2) G-P(sol) polarization free energy of solvation -86.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds