Wall clock time and date at job start Tue Mar 31 2020 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00087 * 2 1 4 4 N 1.34780 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63395 * 180.02562 * 4 2 1 6 6 C 1.53195 * 108.89273 * 126.29715 * 5 4 2 7 7 C 1.53346 * 109.14901 * 54.57640 * 6 5 4 8 8 C 1.53004 * 109.41904 * 178.67276 * 7 6 5 9 9 N 1.46500 * 109.47150 * 295.13157 * 8 7 6 10 10 S 1.65596 * 119.99747 * 164.99757 * 9 8 7 11 11 O 1.42101 * 104.27676 * 181.06902 * 10 9 8 12 12 O 1.42093 * 104.27884 * 308.92637 * 10 9 8 13 13 C 1.81406 * 104.45078 * 65.00136 * 10 9 8 14 14 C 1.53001 * 109.47184 * 179.97438 * 13 10 9 15 15 C 1.50693 * 109.47249 * 179.97438 * 14 13 10 16 16 H 1.08010 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00313 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99735 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00071 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47038 * 90.00311 * 19 17 15 21 21 H 1.48499 * 109.46896 * 209.99744 * 19 17 15 22 22 H 1.48491 * 109.47014 * 330.00115 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 7 6 5 24 24 C 1.46933 * 120.62602 * 359.97327 * 4 2 1 25 25 H 1.08993 * 109.47429 * 239.99985 * 1 2 3 26 26 H 1.09000 * 109.46969 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47171 * 119.99037 * 1 2 3 28 28 H 1.09002 * 109.58751 * 246.15665 * 5 4 2 29 29 H 1.08996 * 109.58750 * 6.43850 * 5 4 2 30 30 H 1.08997 * 109.49914 * 174.65962 * 6 5 4 31 31 H 1.09002 * 109.49585 * 294.75599 * 6 5 4 32 32 H 1.09001 * 109.42242 * 58.75065 * 7 6 5 33 33 H 1.09001 * 109.46592 * 55.13132 * 8 7 6 34 34 H 1.08997 * 109.47133 * 175.12697 * 8 7 6 35 35 H 0.97005 * 120.00125 * 344.99696 * 9 8 7 36 36 H 1.08997 * 109.46521 * 300.00060 * 13 10 9 37 37 H 1.08997 * 109.47055 * 59.99842 * 13 10 9 38 38 H 1.08995 * 109.46910 * 299.99971 * 14 13 10 39 39 H 1.09000 * 109.46969 * 59.99517 * 14 13 10 40 40 H 0.97003 * 119.99576 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 7 6 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 7 6 43 43 H 1.08994 * 109.58580 * 353.42544 * 24 4 2 44 44 H 1.09006 * 109.57831 * 113.70037 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6500 -1.1834 0.0000 6 6 4.1361 -2.0477 1.1678 7 6 3.4893 -3.4346 1.0705 8 6 3.9962 -4.3138 2.2155 9 7 5.4347 -4.5413 2.0565 10 16 6.3238 -5.1346 3.3213 11 8 7.6509 -5.1984 2.8172 12 8 5.9941 -4.2842 4.4109 13 6 5.6658 -6.8030 3.5940 14 6 6.4159 -7.4641 4.7521 15 6 5.8688 -8.8498 4.9790 16 1 5.0666 -9.2219 4.3590 17 6 6.3931 -9.6429 5.9775 18 7 7.3709 -9.1904 6.7316 19 14 5.7154 -11.3609 6.2584 20 1 6.4728 -12.3333 5.4301 21 1 5.8537 -11.7192 7.6928 22 1 4.2811 -11.3959 5.8754 23 6 1.9679 -3.2997 1.1664 24 6 1.4602 -2.4477 -0.0005 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5137 -0.8901 28 1 4.0112 -1.6019 -0.9394 29 1 4.0266 -0.1672 0.1160 30 1 5.2208 -2.1444 1.1220 31 1 3.8516 -1.5793 2.1101 32 1 3.7539 -3.8919 0.1171 33 1 3.8102 -3.8146 3.1665 34 1 3.4730 -5.2698 2.1986 35 1 5.8663 -4.3445 1.2104 36 1 4.6050 -6.7399 3.8365 37 1 5.7971 -7.3976 2.6900 38 1 7.4765 -7.5271 4.5091 39 1 6.2850 -6.8695 5.6562 40 1 7.7395 -9.7483 7.4343 41 1 1.7038 -2.8198 2.1087 42 1 1.5109 -4.2883 1.1210 43 1 0.3921 -2.2657 0.1175 44 1 1.6404 -2.9683 -0.9411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322713013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:11 Heat of formation + Delta-G solvation = -130.714420 kcal Electronic energy + Delta-G solvation = -24819.134605 eV Core-core repulsion = 21090.731629 eV Total energy + Delta-G solvation = -3728.402977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.52203 -38.24895 -36.60349 -35.62470 -35.39356 -33.91592 -32.68184 -31.89671 -31.18490 -29.74739 -27.03288 -25.62637 -23.62321 -23.37930 -21.69747 -21.02842 -19.50398 -18.82057 -17.60490 -17.25668 -16.54829 -16.28055 -16.09792 -15.83429 -15.51522 -15.00054 -14.75769 -14.57701 -14.26192 -14.10204 -13.72477 -13.55297 -13.33951 -13.23594 -12.78938 -12.55021 -12.53055 -12.38132 -11.91506 -11.77392 -11.62683 -11.60225 -11.52121 -11.13364 -11.09967 -10.98794 -10.95456 -10.83648 -10.44240 -10.40773 -10.12702 -9.81651 -9.51021 -9.06800 -9.00919 -8.52689 -6.14698 -4.20458 0.77399 2.28708 2.63980 3.12499 3.23967 3.30286 3.32689 4.15131 4.19494 4.28710 4.33100 4.38693 4.45371 4.66692 4.72915 4.79127 4.87462 4.93888 4.95421 5.05451 5.19896 5.20478 5.23066 5.32122 5.41055 5.46901 5.53324 5.55550 5.61703 5.65539 5.72425 5.76111 5.93699 6.08397 6.17524 6.46038 7.02927 7.05459 7.27885 7.34073 7.78009 7.82368 8.15084 8.82930 9.44390 10.96327 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.002499 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.762844 B =11203.615863 C =11911.262995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.109 3.891 6 C -0.132 4.132 7 C -0.093 4.093 8 C 0.119 3.881 9 N -1.128 6.128 10 S 2.593 3.407 11 O -0.968 6.968 12 O -0.967 6.967 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.132 4.132 24 C 0.108 3.892 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.041 12.652 -16.008 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.013 4.013 6 C -0.170 4.170 7 C -0.112 4.112 8 C -0.007 4.007 9 N -0.885 5.885 10 S 2.691 3.309 11 O -0.958 6.958 12 O -0.957 6.957 13 C -0.723 4.723 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.171 4.171 24 C -0.015 4.015 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.006 13.653 -15.238 24.795 hybrid contribution -0.595 -1.576 -0.326 1.716 sum -14.602 12.077 -15.564 24.522 Atomic orbital electron populations 1.21945 0.91826 1.05458 1.04128 1.20836 0.90672 0.83035 0.75418 1.90721 1.70797 1.31105 1.50024 1.48194 1.07130 1.06047 1.73454 1.21630 0.79167 1.02111 0.98407 1.22058 1.01206 0.94693 0.99033 1.21392 0.94967 0.95716 0.99174 1.21324 0.80352 0.99391 0.99664 1.55797 1.18391 1.83022 1.31294 1.05524 0.74076 0.78106 0.73219 1.93555 1.35128 1.87979 1.79175 1.93540 1.84481 1.64163 1.53479 1.30438 1.11875 1.19440 1.10502 1.18961 0.95366 0.96955 0.89880 1.20995 1.19555 0.98359 1.17098 0.92074 1.25076 0.94949 0.98798 0.95708 1.69955 1.25302 1.37282 1.20260 0.86465 0.79307 0.83941 0.77532 1.20471 1.21000 1.19785 1.21950 0.95261 1.00766 0.99154 1.21773 0.96819 0.83892 0.99048 0.89262 0.89052 0.89422 0.91460 0.88931 0.90028 0.90943 0.90066 0.90152 0.91505 0.75522 0.86386 0.86138 0.94846 0.94828 0.92507 0.90757 0.89816 0.89366 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 8.67 36.00 0.31 -0.57 16 2 C 0.51 4.78 7.81 -10.98 -0.09 4.70 16 3 O -0.55 -7.65 16.50 5.55 0.09 -7.56 16 4 N -0.61 -4.73 2.97 -172.79 -0.51 -5.24 16 5 C 0.11 0.91 6.42 -3.71 -0.02 0.88 16 6 C -0.13 -1.11 5.28 -26.45 -0.14 -1.25 16 7 C -0.09 -0.65 2.18 -90.42 -0.20 -0.85 16 8 C 0.12 1.12 5.52 -4.04 -0.02 1.10 16 9 N -1.13 -12.95 5.40 -10.61 -0.06 -13.01 16 10 S 2.59 44.09 5.46 -107.50 -0.59 43.50 16 11 O -0.97 -19.53 18.08 -57.54 -1.04 -20.57 16 12 O -0.97 -19.46 17.50 -57.54 -1.01 -20.47 16 13 C -0.59 -10.75 6.01 37.16 0.22 -10.53 16 14 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 15 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.13 -0.71 5.36 -26.64 -0.14 -0.85 16 24 C 0.11 0.50 6.34 -3.73 -0.02 0.48 16 25 H 0.09 0.31 7.69 -51.93 -0.40 -0.09 16 26 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.09 0.27 7.94 -51.93 -0.41 -0.14 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.95 7.00 -51.93 -0.36 0.58 16 30 H 0.08 0.70 7.52 -51.93 -0.39 0.31 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 3.90 8.34 -34.47 -0.29 3.61 16 36 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -37.81 369.04 -9.66 -47.47 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.17 Total: -0.73 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.65 Total: -19.31 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.17 Total: -43.79 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.96 Total: -48.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 44.09 SS G_CDS: -0.59 Total: 43.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.81 -9.66 -47.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322713013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.249 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds