Wall clock time and date at job start Tue Mar 31 2020 13:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00087 * 2 1 4 4 N 1.34780 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63395 * 180.02562 * 4 2 1 6 6 C 1.53195 * 108.89273 * 126.29715 * 5 4 2 7 7 C 1.53346 * 109.14901 * 54.57640 * 6 5 4 8 8 C 1.53004 * 109.41904 * 178.67276 * 7 6 5 9 9 N 1.46500 * 109.47150 * 295.13157 * 8 7 6 10 10 S 1.65596 * 119.99747 * 164.99757 * 9 8 7 11 11 O 1.42101 * 104.27676 * 181.06902 * 10 9 8 12 12 O 1.42093 * 104.27884 * 308.92637 * 10 9 8 13 13 C 1.81406 * 104.45078 * 65.00136 * 10 9 8 14 14 C 1.53001 * 109.47184 * 179.97438 * 13 10 9 15 15 C 1.50693 * 109.47249 * 179.97438 * 14 13 10 16 16 H 1.08010 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00313 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99735 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00071 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47038 * 90.00311 * 19 17 15 21 21 H 1.48499 * 109.46896 * 209.99744 * 19 17 15 22 22 H 1.48491 * 109.47014 * 330.00115 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 7 6 5 24 24 C 1.46933 * 120.62602 * 359.97327 * 4 2 1 25 25 H 1.08993 * 109.47429 * 239.99985 * 1 2 3 26 26 H 1.09000 * 109.46969 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47171 * 119.99037 * 1 2 3 28 28 H 1.09002 * 109.58751 * 246.15665 * 5 4 2 29 29 H 1.08996 * 109.58750 * 6.43850 * 5 4 2 30 30 H 1.08997 * 109.49914 * 174.65962 * 6 5 4 31 31 H 1.09002 * 109.49585 * 294.75599 * 6 5 4 32 32 H 1.09001 * 109.42242 * 58.75065 * 7 6 5 33 33 H 1.09001 * 109.46592 * 55.13132 * 8 7 6 34 34 H 1.08997 * 109.47133 * 175.12697 * 8 7 6 35 35 H 0.97005 * 120.00125 * 344.99696 * 9 8 7 36 36 H 1.08997 * 109.46521 * 300.00060 * 13 10 9 37 37 H 1.08997 * 109.47055 * 59.99842 * 13 10 9 38 38 H 1.08995 * 109.46910 * 299.99971 * 14 13 10 39 39 H 1.09000 * 109.46969 * 59.99517 * 14 13 10 40 40 H 0.97003 * 119.99576 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 7 6 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 7 6 43 43 H 1.08994 * 109.58580 * 353.42544 * 24 4 2 44 44 H 1.09006 * 109.57831 * 113.70037 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6500 -1.1834 0.0000 6 6 4.1361 -2.0477 1.1678 7 6 3.4893 -3.4346 1.0705 8 6 3.9962 -4.3138 2.2155 9 7 5.4347 -4.5413 2.0565 10 16 6.3238 -5.1346 3.3213 11 8 7.6509 -5.1984 2.8172 12 8 5.9941 -4.2842 4.4109 13 6 5.6658 -6.8030 3.5940 14 6 6.4159 -7.4641 4.7521 15 6 5.8688 -8.8498 4.9790 16 1 5.0666 -9.2219 4.3590 17 6 6.3931 -9.6429 5.9775 18 7 7.3709 -9.1904 6.7316 19 14 5.7154 -11.3609 6.2584 20 1 6.4728 -12.3333 5.4301 21 1 5.8537 -11.7192 7.6928 22 1 4.2811 -11.3959 5.8754 23 6 1.9679 -3.2997 1.1664 24 6 1.4602 -2.4477 -0.0005 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5137 -0.8901 28 1 4.0112 -1.6019 -0.9394 29 1 4.0266 -0.1672 0.1160 30 1 5.2208 -2.1444 1.1220 31 1 3.8516 -1.5793 2.1101 32 1 3.7539 -3.8919 0.1171 33 1 3.8102 -3.8146 3.1665 34 1 3.4730 -5.2698 2.1986 35 1 5.8663 -4.3445 1.2104 36 1 4.6050 -6.7399 3.8365 37 1 5.7971 -7.3976 2.6900 38 1 7.4765 -7.5271 4.5091 39 1 6.2850 -6.8695 5.6562 40 1 7.7395 -9.7483 7.4343 41 1 1.7038 -2.8198 2.1087 42 1 1.5109 -4.2883 1.1210 43 1 0.3921 -2.2657 0.1175 44 1 1.6404 -2.9683 -0.9411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322713013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:09 Heat of formation + Delta-G solvation = -160.106853 kcal Electronic energy + Delta-G solvation = -24820.409157 eV Core-core repulsion = 21090.731629 eV Total energy + Delta-G solvation = -3729.677528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -41.15488 -38.96810 -38.11237 -36.99442 -36.38011 -35.87596 -33.45760 -33.10275 -32.42741 -30.24799 -27.72621 -27.57239 -24.21180 -24.02579 -23.55256 -21.66090 -20.40049 -19.84547 -19.03104 -18.32766 -17.90015 -17.36561 -17.03614 -16.81373 -16.51280 -16.47121 -15.98543 -15.68699 -15.07652 -14.93948 -14.67369 -14.48174 -14.34960 -14.13084 -13.81607 -13.70870 -13.32373 -13.17713 -13.14367 -13.06314 -12.97786 -12.91695 -12.87820 -12.75407 -12.22450 -12.14912 -12.11812 -11.82746 -11.72224 -11.55657 -11.47492 -11.13705 -10.82221 -10.63780 -10.27388 -9.65316 -8.24912 -6.38933 -0.63717 1.42129 1.43937 1.54986 1.62547 1.91338 2.09777 2.39097 2.85175 3.08791 3.30695 3.63432 3.70010 3.82483 3.91542 4.03277 4.15170 4.18828 4.31420 4.35676 4.47046 4.51375 4.58744 4.66412 4.70063 4.75526 4.80919 4.87305 4.89203 4.96178 5.04661 5.11523 5.17774 5.24649 5.29604 5.30743 5.50278 5.59796 5.69800 6.07335 6.19350 6.45415 6.75432 7.17663 7.31442 8.87391 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.002499 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.762844 B =11203.615863 C =11911.262995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.499 3.501 3 O -0.609 6.609 4 N -0.612 5.612 5 C 0.109 3.891 6 C -0.131 4.131 7 C -0.085 4.085 8 C 0.107 3.893 9 N -1.106 6.106 10 S 2.619 3.381 11 O -1.003 7.003 12 O -1.002 7.002 13 C -0.585 4.585 14 C 0.018 3.982 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.936 5.936 19 Si 0.975 3.025 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.255 1.255 23 C -0.130 4.130 24 C 0.104 3.896 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.425 0.575 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.266 0.734 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 10.731 -18.071 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.290 3.710 3 O -0.491 6.491 4 N -0.345 5.345 5 C -0.013 4.013 6 C -0.169 4.169 7 C -0.105 4.105 8 C -0.018 4.018 9 N -0.869 5.869 10 S 2.716 3.284 11 O -0.993 6.993 12 O -0.992 6.992 13 C -0.718 4.718 14 C -0.021 4.021 15 C -0.576 4.576 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.179 1.179 23 C -0.169 4.169 24 C -0.017 4.017 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.261 0.739 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.143 11.692 -17.318 27.028 hybrid contribution 0.371 -0.920 0.280 1.031 sum -16.772 10.772 -17.038 26.223 Atomic orbital electron populations 1.21961 0.88292 1.05869 1.06388 1.21694 0.92470 0.82537 0.74322 1.90692 1.72237 1.33263 1.52954 1.48357 1.06878 1.07038 1.72208 1.21544 0.80145 1.00571 0.99084 1.22023 1.01063 0.95841 0.97979 1.21399 0.96205 0.93886 0.99051 1.21675 0.78722 1.01280 1.00153 1.55243 1.19336 1.81921 1.30398 1.04421 0.73369 0.77333 0.73281 1.93500 1.37782 1.88257 1.79810 1.93498 1.84904 1.64914 1.55835 1.30312 1.12531 1.20175 1.08748 1.18829 0.94741 0.96993 0.91526 1.21535 1.19712 0.99215 1.17090 0.90325 1.26150 0.95203 1.03614 0.95524 1.70112 1.27090 1.39196 1.21180 0.85299 0.79413 0.78179 0.77273 1.19702 1.21087 1.17859 1.21976 0.93672 1.02215 0.99049 1.22071 0.97907 0.82148 0.99616 0.87136 0.89760 0.86629 0.89734 0.91815 0.90639 0.93148 0.87908 0.91646 0.88737 0.73854 0.83686 0.83685 0.97773 0.97661 0.92477 0.91747 0.87260 0.86755 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 8.67 71.24 0.62 -0.67 16 2 C 0.50 8.97 7.81 87.66 0.68 9.66 16 3 O -0.61 -17.76 16.50 -3.04 -0.05 -17.81 16 4 N -0.61 -8.38 2.97 -818.98 -2.44 -10.82 16 5 C 0.11 1.77 6.42 86.36 0.55 2.32 16 6 C -0.13 -2.11 5.28 30.78 0.16 -1.94 16 7 C -0.09 -0.95 2.18 -10.66 -0.02 -0.97 16 8 C 0.11 1.73 5.52 86.38 0.48 2.21 16 9 N -1.11 -23.27 5.40 -187.49 -1.01 -24.28 16 10 S 2.62 88.34 5.46 -56.49 -0.31 88.03 16 11 O -1.00 -40.87 18.08 -127.65 -2.31 -43.18 16 12 O -1.00 -41.02 17.50 -127.65 -2.23 -43.25 16 13 C -0.59 -20.61 6.01 71.98 0.43 -20.18 16 14 C 0.02 0.92 4.98 29.85 0.15 1.07 16 15 C -0.54 -29.00 9.11 25.60 0.23 -28.77 16 16 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 17 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 18 N -0.94 -56.67 13.29 21.45 0.28 -56.39 16 19 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 23 C -0.13 -0.89 5.36 30.65 0.16 -0.73 16 24 C 0.10 0.55 6.34 86.35 0.55 1.10 16 25 H 0.11 0.40 7.69 -2.39 -0.02 0.38 16 26 H 0.08 0.80 8.12 -2.39 -0.02 0.79 16 27 H 0.12 0.26 7.94 -2.39 -0.02 0.24 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.40 7.00 -2.39 -0.02 1.39 16 30 H 0.08 1.28 7.52 -2.39 -0.02 1.26 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.29 7.69 -2.39 -0.02 1.27 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 7.07 8.34 -96.74 -0.81 6.26 16 36 H 0.15 4.27 8.14 -2.39 -0.02 4.25 16 37 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 38 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 43 H 0.11 0.06 5.93 -2.39 -0.01 0.04 16 44 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 Total: -1.00 -86.80 369.04 -1.39 -88.19 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.18 Total: 11.87 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 4.46 Total: -36.82 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.16 Total: -91.48 kcal Atomic # 8 Polarization: -99.65 SS G_CDS: -4.59 Total: -104.24 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 88.34 SS G_CDS: -0.31 Total: 88.03 kcal Total: -86.80 -1.39 -88.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322713013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.920 kcal (2) G-P(sol) polarization free energy of solvation -86.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds