Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.45493 * 2 1 4 4 C 1.53189 * 109.46134 * 240.02609 * 2 1 3 5 5 H 1.09001 * 109.55125 * 301.56636 * 4 2 1 6 6 C 1.53002 * 109.64472 * 61.83373 * 4 2 1 7 7 S 1.81665 * 108.94588 * 181.72991 * 4 2 1 8 8 O 1.42095 * 108.65310 * 301.20887 * 7 4 2 9 9 O 1.42101 * 108.65012 * 169.91354 * 7 4 2 10 10 C 1.81662 * 101.39076 * 55.56199 * 7 4 2 11 11 C 1.53192 * 108.94852 * 304.43595 * 10 7 4 12 12 N 1.46379 * 109.46719 * 119.98523 * 2 1 3 13 13 C 1.34777 * 119.70355 * 4.57927 * 12 2 1 14 14 O 1.21289 * 119.99478 * 354.57361 * 13 12 2 15 15 C 1.50704 * 120.00264 * 174.57479 * 13 12 2 16 16 H 1.08999 * 109.46484 * 319.99915 * 15 13 12 17 17 N 1.46901 * 109.46628 * 200.00251 * 15 13 12 18 18 C 1.52996 * 109.47079 * 80.00470 * 15 13 12 19 19 C 1.53002 * 109.46976 * 185.00366 * 18 15 13 20 20 C 1.50698 * 109.46995 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00417 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99882 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47334 * 89.99908 * 24 22 20 26 26 H 1.48503 * 109.47144 * 210.00335 * 24 22 20 27 27 H 1.48507 * 109.46912 * 329.99952 * 24 22 20 28 28 H 1.09004 * 109.46754 * 297.57780 * 1 2 3 29 29 H 1.08997 * 109.47203 * 57.58108 * 1 2 3 30 30 H 1.09005 * 109.47087 * 177.58588 * 1 2 3 31 31 H 1.09001 * 109.46367 * 179.52317 * 6 4 2 32 32 H 1.09000 * 109.47173 * 299.52084 * 6 4 2 33 33 H 1.08999 * 109.47235 * 59.52234 * 6 4 2 34 34 H 1.08996 * 109.56112 * 184.59875 * 10 7 4 35 35 H 1.08999 * 109.65117 * 64.32420 * 10 7 4 36 36 H 1.09000 * 109.46095 * 298.24897 * 11 10 7 37 37 H 1.08995 * 109.46649 * 178.26687 * 11 10 7 38 38 H 1.00897 * 111.00477 * 299.99707 * 17 15 13 39 39 H 1.00897 * 111.00052 * 63.95716 * 17 15 13 40 40 H 1.09005 * 109.46758 * 304.99947 * 18 15 13 41 41 H 1.08997 * 109.47762 * 64.99862 * 18 15 13 42 42 H 1.09003 * 109.46304 * 299.99350 * 19 18 15 43 43 H 1.08997 * 109.47287 * 59.99205 * 19 18 15 44 44 H 0.97006 * 120.00358 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0404 -0.7216 -1.2512 5 1 1.6550 -1.7411 -1.2671 6 6 1.5705 0.0233 -2.5023 7 16 3.8563 -0.7585 -1.2113 8 8 4.3369 0.5776 -1.1587 9 8 4.3159 -1.6241 -2.2404 10 6 4.1639 -1.5503 0.3944 11 6 3.4509 -0.7496 1.4886 12 7 2.0179 -0.6897 1.1954 13 6 1.1402 -1.2798 2.0309 14 8 -0.0518 -1.1546 1.8452 15 6 1.6399 -2.0949 3.1958 16 1 2.5054 -2.6800 2.8850 17 7 0.5761 -2.9990 3.6529 18 6 2.0402 -1.1595 4.3384 19 6 2.6631 -1.9767 5.4721 20 6 3.0579 -1.0553 6.5973 21 1 2.8826 0.0070 6.5122 22 6 3.6431 -1.5684 7.7354 23 7 3.8561 -2.8619 7.8392 24 14 4.1332 -0.4262 9.1299 25 1 2.9980 -0.2855 10.0768 26 1 5.3062 -0.9916 9.8438 27 1 4.4851 0.9067 8.5775 28 1 -0.3633 0.4758 0.9110 29 1 -0.3633 0.5509 -0.8675 30 1 -0.3633 -1.0268 -0.0433 31 1 1.9423 -0.4877 -3.3904 32 1 0.4809 0.0446 -2.5247 33 1 1.9535 1.0436 -2.4830 34 1 5.2353 -1.5668 0.5939 35 1 3.7797 -2.5703 0.3798 36 1 3.8573 0.2612 1.5222 37 1 3.6044 -1.2350 2.4524 38 1 -0.2379 -2.4802 3.9466 39 1 0.3389 -3.6693 2.9370 40 1 2.7652 -0.4312 3.9747 41 1 1.1569 -0.6391 4.7085 42 1 1.9381 -2.7049 5.8357 43 1 3.5464 -2.4971 5.1020 44 1 4.2681 -3.2230 8.6398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326047126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -88.834506 kcal Electronic energy + Delta-G solvation = -26389.735652 eV Core-core repulsion = 22663.148725 eV Total energy + Delta-G solvation = -3726.586928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94201 -37.59541 -37.02165 -36.36094 -35.88584 -34.52593 -32.88526 -31.25615 -30.24035 -29.47961 -26.66891 -25.51480 -24.38553 -23.36036 -21.80546 -20.44730 -19.46689 -19.02246 -17.49154 -17.22186 -16.83172 -16.38713 -16.28786 -16.11976 -15.77017 -15.04930 -14.74114 -14.37643 -14.22522 -13.83917 -13.67919 -13.48999 -13.26425 -12.77411 -12.68341 -12.65527 -12.43217 -12.36306 -12.31342 -12.28200 -12.11050 -12.03374 -11.66944 -11.49619 -11.04189 -10.92897 -10.70339 -10.59718 -10.36647 -9.91562 -9.67797 -9.38431 -9.11600 -9.06059 -8.39725 -8.26013 -6.00471 -4.03153 -0.36184 2.30469 2.43798 2.54777 3.26713 3.30963 3.37743 3.40117 3.61163 3.86605 4.15338 4.26335 4.41887 4.46144 4.56643 4.67026 4.77406 4.82623 4.96084 5.06418 5.15508 5.28784 5.31287 5.34570 5.36157 5.45039 5.49920 5.63598 5.64549 5.89583 6.03230 6.27727 6.38808 6.51431 6.90651 7.02362 7.31771 7.64708 7.67196 7.86198 7.99947 8.04371 8.40063 9.04636 9.60805 11.10249 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.003567 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.409619 B = 7848.308642 C = 8563.025358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.095 0.905 4 C -0.581 4.581 5 H 0.139 0.861 6 C -0.139 4.139 7 S 2.415 3.585 8 O -0.931 6.931 9 O -0.940 6.940 10 C -0.624 4.624 11 C 0.108 3.892 12 N -0.624 5.624 13 C 0.488 3.512 14 O -0.530 6.530 15 C 0.072 3.928 16 H 0.100 0.900 17 N -0.805 5.805 18 C -0.101 4.101 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.052 0.948 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.349 0.651 39 H 0.334 0.666 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 3.268 -19.850 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.113 0.887 4 C -0.692 4.692 5 H 0.157 0.843 6 C -0.197 4.197 7 S 2.597 3.403 8 O -0.928 6.928 9 O -0.937 6.937 10 C -0.754 4.754 11 C -0.016 4.016 12 N -0.358 5.358 13 C 0.277 3.723 14 O -0.407 6.407 15 C -0.044 4.044 16 H 0.118 0.882 17 N -0.333 5.333 18 C -0.139 4.139 19 C -0.006 4.006 20 C -0.563 4.563 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.531 5.531 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.146 0.854 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.786 3.261 -19.869 20.327 hybrid contribution -0.583 0.495 0.514 0.921 sum -3.368 3.756 -19.356 20.003 Atomic orbital electron populations 1.22242 0.90709 1.03765 1.01690 1.20996 0.98507 0.95063 0.80421 0.88683 1.30532 1.25205 1.09572 1.03880 0.84273 1.21614 1.04456 1.00356 0.93276 1.08282 0.78278 0.76159 0.77547 1.93590 1.77799 1.34817 1.86586 1.93592 1.78689 1.67895 1.53511 1.30645 1.11442 1.13168 1.20193 1.21603 0.78790 1.01782 0.99459 1.48329 1.07053 1.55889 1.24570 1.22881 0.86612 0.78842 0.84001 1.90741 1.16309 1.60749 1.72886 1.21997 0.96242 0.94137 0.91999 0.88229 1.58990 1.13902 1.18338 1.42096 1.21777 1.00439 0.96868 0.94837 1.19019 0.95697 0.95044 0.90799 1.21252 1.39863 0.93754 1.01431 0.92932 1.24982 0.95939 0.94938 0.98365 1.69966 1.43628 1.11323 1.28169 0.86651 0.78108 0.81013 0.82534 1.20714 1.21268 1.19953 0.90053 0.93683 0.90753 0.90785 0.89469 0.90542 0.83063 0.84314 0.88199 0.85376 0.83667 0.85405 0.92498 0.92524 0.94613 0.96898 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 7.18 37.16 0.27 -1.06 16 2 C 0.15 1.49 2.80 -67.90 -0.19 1.30 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.58 -4.69 2.71 -26.63 -0.07 -4.76 16 5 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.14 -0.96 8.90 37.16 0.33 -0.63 16 7 S 2.41 22.58 4.66 -107.50 -0.50 22.08 16 8 O -0.93 -11.18 18.02 -57.81 -1.04 -12.22 16 9 O -0.94 -11.60 18.10 -57.81 -1.05 -12.64 16 10 C -0.62 -4.85 6.55 37.26 0.24 -4.61 16 11 C 0.11 1.04 5.43 -4.00 -0.02 1.02 16 12 N -0.62 -6.74 2.80 -166.05 -0.47 -7.21 16 13 C 0.49 6.49 6.82 -10.98 -0.07 6.41 16 14 O -0.53 -7.87 11.40 5.55 0.06 -7.81 16 15 C 0.07 1.06 2.29 -68.86 -0.16 0.90 16 16 H 0.10 1.35 6.97 -51.93 -0.36 0.99 16 17 N -0.81 -12.09 8.44 -5.65 -0.05 -12.14 16 18 C -0.10 -1.84 4.39 -26.73 -0.12 -1.96 16 19 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 20 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 21 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 24 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.08 1.03 6.65 -51.93 -0.35 0.68 16 29 H 0.04 0.38 6.63 -51.93 -0.34 0.03 16 30 H 0.07 0.87 6.70 -51.93 -0.35 0.52 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.13 1.35 4.48 -51.93 -0.23 1.12 16 38 H 0.35 5.32 8.58 -39.29 -0.34 4.98 16 39 H 0.33 4.26 9.06 -39.29 -0.36 3.90 16 40 H 0.06 0.96 6.58 -51.93 -0.34 0.62 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -34.55 353.34 -9.09 -43.65 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.76 Total: 5.87 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.34 Total: -15.70 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.22 Total: -44.67 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.02 Total: -32.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 22.58 SS G_CDS: -0.50 Total: 22.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.55 -9.09 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.186 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds