Wall clock time and date at job start Tue Mar 31 2020 12:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.45493 * 2 1 4 4 C 1.53189 * 109.46134 * 240.02609 * 2 1 3 5 5 H 1.09001 * 109.55125 * 301.56636 * 4 2 1 6 6 C 1.53002 * 109.64472 * 61.83373 * 4 2 1 7 7 S 1.81665 * 108.94588 * 181.72991 * 4 2 1 8 8 O 1.42095 * 108.65310 * 301.20887 * 7 4 2 9 9 O 1.42101 * 108.65012 * 169.91354 * 7 4 2 10 10 C 1.81662 * 101.39076 * 55.56199 * 7 4 2 11 11 C 1.53192 * 108.94852 * 304.43595 * 10 7 4 12 12 N 1.46379 * 109.46719 * 119.98523 * 2 1 3 13 13 C 1.34777 * 119.70355 * 4.57927 * 12 2 1 14 14 O 1.21289 * 119.99478 * 354.57361 * 13 12 2 15 15 C 1.50704 * 120.00264 * 174.57479 * 13 12 2 16 16 H 1.08999 * 109.46484 * 319.99915 * 15 13 12 17 17 N 1.46901 * 109.46628 * 200.00251 * 15 13 12 18 18 C 1.52996 * 109.47079 * 80.00470 * 15 13 12 19 19 C 1.53002 * 109.46976 * 185.00366 * 18 15 13 20 20 C 1.50698 * 109.46995 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00417 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99882 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47334 * 89.99908 * 24 22 20 26 26 H 1.48503 * 109.47144 * 210.00335 * 24 22 20 27 27 H 1.48507 * 109.46912 * 329.99952 * 24 22 20 28 28 H 1.09004 * 109.46754 * 297.57780 * 1 2 3 29 29 H 1.08997 * 109.47203 * 57.58108 * 1 2 3 30 30 H 1.09005 * 109.47087 * 177.58588 * 1 2 3 31 31 H 1.09001 * 109.46367 * 179.52317 * 6 4 2 32 32 H 1.09000 * 109.47173 * 299.52084 * 6 4 2 33 33 H 1.08999 * 109.47235 * 59.52234 * 6 4 2 34 34 H 1.08996 * 109.56112 * 184.59875 * 10 7 4 35 35 H 1.08999 * 109.65117 * 64.32420 * 10 7 4 36 36 H 1.09000 * 109.46095 * 298.24897 * 11 10 7 37 37 H 1.08995 * 109.46649 * 178.26687 * 11 10 7 38 38 H 1.00897 * 111.00477 * 299.99707 * 17 15 13 39 39 H 1.00897 * 111.00052 * 63.95716 * 17 15 13 40 40 H 1.09005 * 109.46758 * 304.99947 * 18 15 13 41 41 H 1.08997 * 109.47762 * 64.99862 * 18 15 13 42 42 H 1.09003 * 109.46304 * 299.99350 * 19 18 15 43 43 H 1.08997 * 109.47287 * 59.99205 * 19 18 15 44 44 H 0.97006 * 120.00358 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0404 -0.7216 -1.2512 5 1 1.6550 -1.7411 -1.2671 6 6 1.5705 0.0233 -2.5023 7 16 3.8563 -0.7585 -1.2113 8 8 4.3369 0.5776 -1.1587 9 8 4.3159 -1.6241 -2.2404 10 6 4.1639 -1.5503 0.3944 11 6 3.4509 -0.7496 1.4886 12 7 2.0179 -0.6897 1.1954 13 6 1.1402 -1.2798 2.0309 14 8 -0.0518 -1.1546 1.8452 15 6 1.6399 -2.0949 3.1958 16 1 2.5054 -2.6800 2.8850 17 7 0.5761 -2.9990 3.6529 18 6 2.0402 -1.1595 4.3384 19 6 2.6631 -1.9767 5.4721 20 6 3.0579 -1.0553 6.5973 21 1 2.8826 0.0070 6.5122 22 6 3.6431 -1.5684 7.7354 23 7 3.8561 -2.8619 7.8392 24 14 4.1332 -0.4262 9.1299 25 1 2.9980 -0.2855 10.0768 26 1 5.3062 -0.9916 9.8438 27 1 4.4851 0.9067 8.5775 28 1 -0.3633 0.4758 0.9110 29 1 -0.3633 0.5509 -0.8675 30 1 -0.3633 -1.0268 -0.0433 31 1 1.9423 -0.4877 -3.3904 32 1 0.4809 0.0446 -2.5247 33 1 1.9535 1.0436 -2.4830 34 1 5.2353 -1.5668 0.5939 35 1 3.7797 -2.5703 0.3798 36 1 3.8573 0.2612 1.5222 37 1 3.6044 -1.2350 2.4524 38 1 -0.2379 -2.4802 3.9466 39 1 0.3389 -3.6693 2.9370 40 1 2.7652 -0.4312 3.9747 41 1 1.1569 -0.6391 4.7085 42 1 1.9381 -2.7049 5.8357 43 1 3.5464 -2.4971 5.1020 44 1 4.2681 -3.2230 8.6398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326047126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:09 Heat of formation + Delta-G solvation = -116.075599 kcal Electronic energy + Delta-G solvation = -26390.916915 eV Core-core repulsion = 22663.148725 eV Total energy + Delta-G solvation = -3727.768190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92543 -38.49518 -37.90580 -37.19858 -37.10308 -35.50327 -34.71340 -32.06181 -31.88299 -30.30508 -28.12875 -26.46047 -25.52300 -24.52593 -22.77146 -21.93564 -20.46168 -19.85566 -18.57811 -18.19212 -17.99470 -17.64710 -17.18719 -17.02951 -16.89157 -16.46889 -15.96548 -15.69598 -15.20667 -14.75684 -14.49634 -14.41491 -14.32505 -14.04967 -13.75636 -13.62544 -13.48719 -13.33494 -13.31510 -13.19638 -13.15868 -12.98512 -12.82100 -12.78917 -12.44374 -12.31786 -12.16864 -11.80270 -11.63268 -11.43488 -11.12922 -11.06119 -10.54747 -10.43183 -9.98204 -9.45430 -8.12309 -6.21774 -1.08687 1.38095 1.43599 1.44519 1.54456 1.60725 1.66456 2.45744 2.55507 2.86395 3.13880 3.21510 3.33622 3.53194 3.63986 3.71072 3.89231 3.94137 4.04280 4.12810 4.25221 4.30760 4.33476 4.59387 4.61714 4.72488 4.74935 4.78740 4.80587 4.95189 5.01027 5.09080 5.25316 5.27386 5.52880 5.60159 5.87096 5.99042 6.01260 6.19451 6.32576 6.53629 6.97243 6.97966 7.46597 8.98530 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.003567 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.409619 B = 7848.308642 C = 8563.025358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.151 3.849 3 H 0.105 0.895 4 C -0.569 4.569 5 H 0.154 0.846 6 C -0.146 4.146 7 S 2.423 3.577 8 O -0.961 6.961 9 O -0.972 6.972 10 C -0.615 4.615 11 C 0.098 3.902 12 N -0.617 5.617 13 C 0.494 3.506 14 O -0.546 6.546 15 C 0.078 3.922 16 H 0.113 0.887 17 N -0.819 5.819 18 C -0.088 4.088 19 C 0.039 3.961 20 C -0.541 4.541 21 H 0.056 0.944 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.954 3.046 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.263 1.263 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.346 0.654 39 H 0.347 0.653 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.005 0.995 43 H -0.003 1.003 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 4.131 -20.745 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.047 3.953 3 H 0.123 0.877 4 C -0.681 4.681 5 H 0.172 0.828 6 C -0.205 4.205 7 S 2.609 3.391 8 O -0.958 6.958 9 O -0.969 6.969 10 C -0.747 4.747 11 C -0.025 4.025 12 N -0.351 5.351 13 C 0.282 3.718 14 O -0.424 6.424 15 C -0.038 4.038 16 H 0.131 0.869 17 N -0.348 5.348 18 C -0.126 4.126 19 C 0.002 3.998 20 C -0.580 4.580 21 H 0.074 0.926 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.188 1.188 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.189 0.811 35 H 0.175 0.825 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.016 0.984 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.597 4.146 -20.810 21.377 hybrid contribution -0.666 0.215 0.791 1.056 sum -3.262 4.361 -20.019 20.746 Atomic orbital electron populations 1.22114 0.91089 1.03103 1.01546 1.21132 0.98169 0.95686 0.80351 0.87716 1.30425 1.23500 1.10505 1.03625 0.82841 1.21747 1.05387 1.00509 0.92827 1.07866 0.78544 0.75122 0.77531 1.93550 1.78793 1.36296 1.87137 1.93553 1.79705 1.68373 1.55277 1.30584 1.12753 1.13547 1.17772 1.21758 0.78176 1.02854 0.99736 1.48280 1.07282 1.55008 1.24487 1.22399 0.86504 0.78908 0.84023 1.90760 1.17001 1.61294 1.73380 1.21792 0.96754 0.93853 0.91400 0.86888 1.58969 1.13905 1.18867 1.43086 1.21505 0.99840 0.96914 0.94372 1.18827 0.94438 0.94514 0.92003 1.21736 1.39344 0.94405 1.02471 0.92597 1.25833 0.96088 0.96367 1.01077 1.70091 1.44696 1.13129 1.28991 0.85613 0.77715 0.79379 0.79311 1.20410 1.20951 1.18751 0.92380 0.91390 0.91884 0.90098 0.88158 0.90213 0.81077 0.82522 0.87042 0.86101 0.84003 0.83933 0.90889 0.93776 0.97683 0.98425 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.18 71.98 0.52 -1.79 16 2 C 0.15 2.58 2.80 45.08 0.13 2.70 16 3 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 4 C -0.57 -7.84 2.71 30.66 0.08 -7.76 16 5 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.15 -1.68 8.90 71.98 0.64 -1.04 16 7 S 2.42 40.97 4.66 -56.49 -0.26 40.71 16 8 O -0.96 -21.71 18.02 -127.39 -2.30 -24.01 16 9 O -0.97 -22.67 18.10 -127.39 -2.31 -24.98 16 10 C -0.62 -8.05 6.55 72.05 0.47 -7.58 16 11 C 0.10 1.68 5.43 86.46 0.47 2.15 16 12 N -0.62 -12.13 2.80 -797.66 -2.24 -14.37 16 13 C 0.49 12.46 6.82 87.66 0.60 13.06 16 14 O -0.55 -15.70 11.40 -3.06 -0.03 -15.74 16 15 C 0.08 2.22 2.29 44.17 0.10 2.32 16 16 H 0.11 2.91 6.97 -2.39 -0.02 2.89 16 17 N -0.82 -24.40 8.44 -171.80 -1.45 -25.85 16 18 C -0.09 -3.18 4.39 30.59 0.13 -3.05 16 19 C 0.04 1.91 4.86 29.85 0.15 2.05 16 20 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 21 H 0.06 2.92 7.74 -2.91 -0.02 2.89 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 24 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 28 H 0.06 1.40 6.65 -2.39 -0.02 1.39 16 29 H 0.07 0.97 6.63 -2.39 -0.02 0.96 16 30 H 0.06 1.36 6.70 -2.38 -0.02 1.34 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.90 6.57 -2.39 -0.02 0.88 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 2.32 4.48 -2.39 -0.01 2.30 16 38 H 0.35 10.60 8.58 -89.70 -0.77 9.83 16 39 H 0.35 8.60 9.06 -89.70 -0.81 7.79 16 40 H 0.07 2.38 6.58 -2.38 -0.02 2.36 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -74.30 353.34 -2.85 -77.15 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.55 Total: 23.80 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 3.98 Total: -27.32 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -3.40 Total: -94.85 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -4.64 Total: -64.72 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 40.97 SS G_CDS: -0.26 Total: 40.71 kcal Total: -74.30 -2.85 -77.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.926 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds