Wall clock time and date at job start Tue Mar 31 2020 12:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45552 * 2 1 4 4 C 1.52695 * 109.34065 * 240.25778 * 2 1 3 5 5 H 1.09002 * 109.45149 * 301.61850 * 4 2 1 6 6 C 1.53001 * 109.71456 * 61.86026 * 4 2 1 7 7 S 1.81671 * 108.99369 * 181.81957 * 4 2 1 8 8 O 1.42104 * 108.65107 * 301.10404 * 7 4 2 9 9 O 1.42097 * 108.72813 * 169.83439 * 7 4 2 10 10 C 1.81666 * 101.38729 * 55.45486 * 7 4 2 11 11 C 1.53190 * 108.94781 * 304.43645 * 10 7 4 12 12 N 1.46390 * 109.50656 * 58.26177 * 11 10 7 13 13 C 1.34765 * 119.70369 * 115.68123 * 12 11 10 14 14 O 1.21283 * 120.00615 * 174.83933 * 13 12 11 15 15 C 1.50704 * 119.99849 * 354.83704 * 13 12 11 16 16 H 1.08996 * 109.47038 * 40.00485 * 15 13 12 17 17 N 1.46906 * 109.47176 * 160.00140 * 15 13 12 18 18 C 1.53002 * 109.47131 * 279.99988 * 15 13 12 19 19 C 1.53002 * 109.46824 * 174.99902 * 18 15 13 20 20 C 1.50696 * 109.46787 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00537 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00290 * 180.27490 * 20 19 18 23 23 N 1.31506 * 120.00258 * 179.72544 * 22 20 19 24 24 Si 1.86807 * 119.99557 * 359.72824 * 22 20 19 25 25 H 1.48494 * 109.47324 * 89.99826 * 24 22 20 26 26 H 1.48500 * 109.46687 * 210.00244 * 24 22 20 27 27 H 1.48505 * 109.46874 * 329.99938 * 24 22 20 28 28 H 1.08995 * 109.47702 * 297.83583 * 1 2 3 29 29 H 1.09006 * 109.46686 * 57.83719 * 1 2 3 30 30 H 1.08997 * 109.47220 * 177.83110 * 1 2 3 31 31 H 1.08997 * 109.47123 * 179.61451 * 6 4 2 32 32 H 1.09004 * 109.46908 * 299.61346 * 6 4 2 33 33 H 1.08998 * 109.47392 * 59.61203 * 6 4 2 34 34 H 1.08998 * 109.55754 * 184.60375 * 10 7 4 35 35 H 1.08997 * 109.64879 * 64.32975 * 10 7 4 36 36 H 1.08997 * 109.46648 * 298.24533 * 11 10 7 37 37 H 1.09002 * 109.46364 * 178.26798 * 11 10 7 38 38 H 1.00899 * 110.99858 * 296.04594 * 17 15 13 39 39 H 1.00898 * 110.99722 * 59.99570 * 17 15 13 40 40 H 1.08995 * 109.47034 * 55.00297 * 18 15 13 41 41 H 1.08997 * 109.46799 * 294.99781 * 18 15 13 42 42 H 1.08995 * 109.46992 * 60.00369 * 19 18 15 43 43 H 1.08998 * 109.46929 * 299.99904 * 19 18 15 44 44 H 0.97003 * 119.99945 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0357 -0.7148 -1.2510 5 1 1.6475 -1.7332 -1.2691 6 6 1.5657 0.0348 -2.4992 7 16 3.8516 -0.7568 -1.2146 8 8 4.3360 0.5780 -1.1592 9 8 4.3087 -1.6199 -2.2467 10 6 4.1599 -1.5539 0.3885 11 6 3.4511 -0.7542 1.4861 12 7 2.0177 -0.6896 1.1957 13 6 1.1396 -1.2750 2.0337 14 8 -0.0523 -1.1459 1.8503 15 6 1.6386 -2.0903 3.1989 16 1 2.5021 -1.5964 3.6445 17 7 0.5730 -2.2134 4.2026 18 6 2.0430 -3.4829 2.7109 19 6 2.6651 -4.2678 3.8676 20 6 3.0627 -5.6396 3.3872 21 1 2.8896 -5.9232 2.3596 22 6 3.6431 -6.5347 4.2608 23 7 3.9852 -7.7337 3.8429 24 14 3.9432 -6.0440 6.0382 25 1 2.7553 -6.3967 6.8564 26 1 5.1333 -6.7653 6.5565 27 1 4.1797 -4.5799 6.1142 28 1 -0.3634 0.4798 0.9087 29 1 -0.3633 0.5471 -0.8700 30 1 -0.3633 -1.0269 -0.0389 31 1 1.9345 -0.4748 -3.3894 32 1 0.4761 0.0591 -2.5197 33 1 1.9515 1.0540 -2.4779 34 1 5.2316 -1.5738 0.5860 35 1 3.7729 -2.5727 0.3717 36 1 3.8603 0.2554 1.5218 37 1 3.6051 -1.2426 2.4483 38 1 0.3329 -1.3121 4.5875 39 1 -0.2393 -2.6684 3.8136 40 1 2.7694 -3.3883 1.9039 41 1 1.1614 -4.0103 2.3465 42 1 1.9386 -4.3623 4.6747 43 1 3.5465 -3.7403 4.2320 44 1 4.3931 -8.3635 4.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326047175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:14 Heat of formation + Delta-G solvation = -85.006637 kcal Electronic energy + Delta-G solvation = -26680.612166 eV Core-core repulsion = 22954.191228 eV Total energy + Delta-G solvation = -3726.420939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00777 -37.59828 -36.99765 -36.29677 -35.98741 -34.57556 -32.86056 -31.23154 -30.62764 -29.50004 -26.97292 -25.64361 -24.24932 -23.41584 -21.72894 -20.39747 -19.52138 -18.87588 -17.56594 -17.16796 -16.99349 -16.67975 -16.36499 -16.17457 -15.58269 -15.29868 -14.81649 -14.23250 -14.10291 -13.75193 -13.74738 -13.50857 -13.30138 -12.82249 -12.77304 -12.65334 -12.51864 -12.45515 -12.34475 -12.24762 -12.23373 -12.11116 -11.81003 -11.51999 -11.06448 -11.03564 -10.85062 -10.32323 -10.14496 -10.00607 -9.77428 -9.49491 -9.19893 -9.13726 -8.56993 -8.43082 -6.06556 -4.05182 -0.29111 2.33723 2.37869 2.52777 3.31556 3.33938 3.38768 3.42298 3.67606 3.91095 4.16364 4.29105 4.42352 4.44182 4.58489 4.67019 4.73080 4.76368 4.94157 5.03610 5.10377 5.19774 5.28758 5.35646 5.39048 5.45058 5.48489 5.51400 5.64491 5.87886 5.99071 6.14333 6.31493 6.35821 6.71505 6.91813 7.18197 7.26374 7.44813 7.52567 7.77524 7.92983 8.49137 8.97253 9.55982 11.06752 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.004323 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.523598 B = 6475.171926 C = 7505.174087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.094 0.906 4 C -0.584 4.584 5 H 0.143 0.857 6 C -0.138 4.138 7 S 2.415 3.585 8 O -0.935 6.935 9 O -0.935 6.935 10 C -0.627 4.627 11 C 0.113 3.887 12 N -0.623 5.623 13 C 0.489 3.511 14 O -0.528 6.528 15 C 0.068 3.932 16 H 0.101 0.899 17 N -0.810 5.810 18 C -0.091 4.091 19 C -0.004 4.004 20 C -0.525 4.525 21 H 0.069 0.931 22 C 0.068 3.932 23 N -0.904 5.904 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.265 1.265 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.336 0.664 39 H 0.350 0.650 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.013 0.987 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 19.077 -7.765 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.112 0.888 4 C -0.694 4.694 5 H 0.161 0.839 6 C -0.196 4.196 7 S 2.598 3.402 8 O -0.932 6.932 9 O -0.932 6.932 10 C -0.757 4.757 11 C -0.011 4.011 12 N -0.358 5.358 13 C 0.277 3.723 14 O -0.405 6.405 15 C -0.048 4.048 16 H 0.119 0.881 17 N -0.338 5.338 18 C -0.129 4.129 19 C -0.041 4.041 20 C -0.563 4.563 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.543 5.543 24 Si 0.710 3.290 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.179 18.812 -8.009 20.692 hybrid contribution -0.680 0.166 0.733 1.013 sum -3.858 18.978 -7.276 20.688 Atomic orbital electron populations 1.22253 0.90725 1.04035 1.01462 1.20878 0.98510 0.94879 0.80547 0.88817 1.30459 1.25391 1.09899 1.03693 0.83921 1.21612 1.04429 1.00158 0.93444 1.08273 0.78233 0.76061 0.77681 1.93571 1.77775 1.35152 1.86746 1.93606 1.78565 1.67842 1.53231 1.30691 1.11518 1.13893 1.19616 1.21486 0.78874 1.01135 0.99597 1.48333 1.06980 1.55907 1.24586 1.22717 0.86635 0.78243 0.84697 1.90750 1.16268 1.60345 1.73114 1.22046 0.96282 0.97835 0.88594 0.88101 1.59027 1.14009 1.26275 1.34521 1.21550 1.00640 0.90461 1.00260 1.19480 0.95526 0.95139 0.93962 1.21142 1.40073 0.96525 0.98522 0.91309 1.25008 0.94999 0.94690 0.98666 1.69916 1.42545 1.06049 1.35777 0.86747 0.77807 0.79118 0.85376 1.20259 1.21660 1.18939 0.90340 0.93603 0.90495 0.90675 0.89477 0.90657 0.82972 0.83426 0.88548 0.86102 0.85157 0.83509 0.92161 0.92012 0.95146 0.96905 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 7.18 37.16 0.27 -1.03 16 2 C 0.16 1.47 2.78 -68.14 -0.19 1.28 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.58 -5.20 2.69 -26.89 -0.07 -5.28 16 5 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.14 -1.04 8.90 37.16 0.33 -0.71 16 7 S 2.42 24.89 4.66 -107.50 -0.50 24.39 16 8 O -0.94 -11.35 18.02 -57.82 -1.04 -12.39 16 9 O -0.94 -13.05 18.10 -57.82 -1.05 -14.10 16 10 C -0.63 -5.69 6.46 37.26 0.24 -5.45 16 11 C 0.11 1.00 5.54 -4.00 -0.02 0.98 16 12 N -0.62 -6.41 2.81 -166.34 -0.47 -6.88 16 13 C 0.49 6.16 6.80 -10.99 -0.07 6.09 16 14 O -0.53 -7.53 11.40 5.56 0.06 -7.47 16 15 C 0.07 0.93 2.30 -68.86 -0.16 0.77 16 16 H 0.10 1.23 6.28 -51.93 -0.33 0.90 16 17 N -0.81 -11.17 8.44 -5.65 -0.05 -11.21 16 18 C -0.09 -1.57 4.61 -26.73 -0.12 -1.69 16 19 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 20 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 21 H 0.07 2.02 7.99 -52.49 -0.42 1.60 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 24 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.26 -6.06 6.55 56.52 0.37 -5.69 16 28 H 0.08 0.91 6.64 -51.93 -0.35 0.56 16 29 H 0.05 0.38 6.58 -51.93 -0.34 0.04 16 30 H 0.08 0.94 6.70 -51.93 -0.35 0.59 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.56 6.54 -51.93 -0.34 0.22 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.15 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.15 1.42 6.73 -51.93 -0.35 1.07 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.06 5.16 -51.93 -0.27 0.79 16 38 H 0.34 3.91 9.06 -39.29 -0.36 3.55 16 39 H 0.35 4.95 8.58 -39.29 -0.34 4.61 16 40 H 0.06 0.96 6.02 -51.93 -0.31 0.65 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 43 H 0.01 0.28 7.21 -51.93 -0.37 -0.10 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -35.38 347.90 -8.65 -44.03 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.62 Total: 6.39 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.34 Total: -18.01 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.26 Total: -44.70 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -2.03 Total: -33.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 24.89 SS G_CDS: -0.50 Total: 24.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.38 -8.65 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.979 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds