Wall clock time and date at job start Tue Mar 31 2020 12:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45552 * 2 1 4 4 C 1.52695 * 109.34065 * 240.25778 * 2 1 3 5 5 H 1.09002 * 109.45149 * 301.61850 * 4 2 1 6 6 C 1.53001 * 109.71456 * 61.86026 * 4 2 1 7 7 S 1.81671 * 108.99369 * 181.81957 * 4 2 1 8 8 O 1.42104 * 108.65107 * 301.10404 * 7 4 2 9 9 O 1.42097 * 108.72813 * 169.83439 * 7 4 2 10 10 C 1.81666 * 101.38729 * 55.45486 * 7 4 2 11 11 C 1.53190 * 108.94781 * 304.43645 * 10 7 4 12 12 N 1.46390 * 109.50656 * 58.26177 * 11 10 7 13 13 C 1.34765 * 119.70369 * 115.68123 * 12 11 10 14 14 O 1.21283 * 120.00615 * 174.83933 * 13 12 11 15 15 C 1.50704 * 119.99849 * 354.83704 * 13 12 11 16 16 H 1.08996 * 109.47038 * 40.00485 * 15 13 12 17 17 N 1.46906 * 109.47176 * 160.00140 * 15 13 12 18 18 C 1.53002 * 109.47131 * 279.99988 * 15 13 12 19 19 C 1.53002 * 109.46824 * 174.99902 * 18 15 13 20 20 C 1.50696 * 109.46787 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00537 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00290 * 180.27490 * 20 19 18 23 23 N 1.31506 * 120.00258 * 179.72544 * 22 20 19 24 24 Si 1.86807 * 119.99557 * 359.72824 * 22 20 19 25 25 H 1.48494 * 109.47324 * 89.99826 * 24 22 20 26 26 H 1.48500 * 109.46687 * 210.00244 * 24 22 20 27 27 H 1.48505 * 109.46874 * 329.99938 * 24 22 20 28 28 H 1.08995 * 109.47702 * 297.83583 * 1 2 3 29 29 H 1.09006 * 109.46686 * 57.83719 * 1 2 3 30 30 H 1.08997 * 109.47220 * 177.83110 * 1 2 3 31 31 H 1.08997 * 109.47123 * 179.61451 * 6 4 2 32 32 H 1.09004 * 109.46908 * 299.61346 * 6 4 2 33 33 H 1.08998 * 109.47392 * 59.61203 * 6 4 2 34 34 H 1.08998 * 109.55754 * 184.60375 * 10 7 4 35 35 H 1.08997 * 109.64879 * 64.32975 * 10 7 4 36 36 H 1.08997 * 109.46648 * 298.24533 * 11 10 7 37 37 H 1.09002 * 109.46364 * 178.26798 * 11 10 7 38 38 H 1.00899 * 110.99858 * 296.04594 * 17 15 13 39 39 H 1.00898 * 110.99722 * 59.99570 * 17 15 13 40 40 H 1.08995 * 109.47034 * 55.00297 * 18 15 13 41 41 H 1.08997 * 109.46799 * 294.99781 * 18 15 13 42 42 H 1.08995 * 109.46992 * 60.00369 * 19 18 15 43 43 H 1.08998 * 109.46929 * 299.99904 * 19 18 15 44 44 H 0.97003 * 119.99945 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0357 -0.7148 -1.2510 5 1 1.6475 -1.7332 -1.2691 6 6 1.5657 0.0348 -2.4992 7 16 3.8516 -0.7568 -1.2146 8 8 4.3360 0.5780 -1.1592 9 8 4.3087 -1.6199 -2.2467 10 6 4.1599 -1.5539 0.3885 11 6 3.4511 -0.7542 1.4861 12 7 2.0177 -0.6896 1.1957 13 6 1.1396 -1.2750 2.0337 14 8 -0.0523 -1.1459 1.8503 15 6 1.6386 -2.0903 3.1989 16 1 2.5021 -1.5964 3.6445 17 7 0.5730 -2.2134 4.2026 18 6 2.0430 -3.4829 2.7109 19 6 2.6651 -4.2678 3.8676 20 6 3.0627 -5.6396 3.3872 21 1 2.8896 -5.9232 2.3596 22 6 3.6431 -6.5347 4.2608 23 7 3.9852 -7.7337 3.8429 24 14 3.9432 -6.0440 6.0382 25 1 2.7553 -6.3967 6.8564 26 1 5.1333 -6.7653 6.5565 27 1 4.1797 -4.5799 6.1142 28 1 -0.3634 0.4798 0.9087 29 1 -0.3633 0.5471 -0.8700 30 1 -0.3633 -1.0269 -0.0389 31 1 1.9345 -0.4748 -3.3894 32 1 0.4761 0.0591 -2.5197 33 1 1.9515 1.0540 -2.4779 34 1 5.2316 -1.5738 0.5860 35 1 3.7729 -2.5727 0.3717 36 1 3.8603 0.2554 1.5218 37 1 3.6051 -1.2426 2.4483 38 1 0.3329 -1.3121 4.5875 39 1 -0.2393 -2.6684 3.8136 40 1 2.7694 -3.3883 1.9039 41 1 1.1614 -4.0103 2.3465 42 1 1.9386 -4.3623 4.6747 43 1 3.5465 -3.7403 4.2320 44 1 4.3931 -8.3635 4.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326047175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:13 Heat of formation + Delta-G solvation = -113.897509 kcal Electronic energy + Delta-G solvation = -26681.864969 eV Core-core repulsion = 22954.191228 eV Total energy + Delta-G solvation = -3727.673741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93040 -38.51438 -37.91227 -37.21541 -37.13735 -35.52443 -34.70538 -32.29412 -32.01128 -30.30736 -28.38983 -26.52839 -25.33042 -24.49550 -22.66284 -21.94591 -20.46333 -19.78703 -18.86189 -18.39483 -17.98039 -17.75434 -17.27238 -17.08758 -16.61953 -16.26784 -16.19787 -15.69201 -15.10573 -14.78247 -14.72835 -14.49612 -14.36067 -14.17654 -13.96042 -13.62119 -13.48726 -13.40835 -13.33533 -13.22995 -13.17462 -12.98310 -12.84328 -12.79094 -12.41146 -12.25684 -11.87526 -11.74539 -11.68257 -11.54260 -11.23602 -11.07648 -10.71298 -10.51258 -9.97790 -9.48453 -8.23784 -6.26992 -1.09784 1.36457 1.42731 1.43560 1.55455 1.59254 1.69855 2.41898 2.54811 2.86082 3.13589 3.15633 3.33101 3.51680 3.63373 3.68923 3.89069 3.93440 3.97666 4.11226 4.24612 4.27731 4.33171 4.58171 4.62225 4.63189 4.73192 4.79388 4.83858 4.84125 4.99660 5.08451 5.16163 5.25107 5.52198 5.53155 5.66503 5.74607 5.99159 6.18092 6.33364 6.52968 6.82524 6.98170 7.38002 8.93002 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.004323 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.523598 B = 6475.171926 C = 7505.174087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.153 3.847 3 H 0.115 0.885 4 C -0.574 4.574 5 H 0.143 0.857 6 C -0.145 4.145 7 S 2.423 3.577 8 O -0.953 6.953 9 O -0.979 6.979 10 C -0.624 4.624 11 C 0.104 3.896 12 N -0.618 5.618 13 C 0.492 3.508 14 O -0.547 6.547 15 C 0.075 3.925 16 H 0.125 0.875 17 N -0.819 5.819 18 C -0.084 4.084 19 C 0.002 3.998 20 C -0.529 4.529 21 H 0.029 0.971 22 C 0.004 3.996 23 N -0.956 5.956 24 Si 0.950 3.050 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.237 1.237 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.350 0.650 39 H 0.346 0.654 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 21.732 -6.598 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 H 0.133 0.867 4 C -0.686 4.686 5 H 0.161 0.839 6 C -0.203 4.203 7 S 2.609 3.391 8 O -0.950 6.950 9 O -0.976 6.976 10 C -0.755 4.755 11 C -0.019 4.019 12 N -0.352 5.352 13 C 0.279 3.721 14 O -0.425 6.425 15 C -0.041 4.041 16 H 0.142 0.858 17 N -0.349 5.349 18 C -0.123 4.123 19 C -0.036 4.036 20 C -0.567 4.567 21 H 0.047 0.953 22 C -0.193 4.193 23 N -0.597 5.597 24 Si 0.774 3.226 25 H -0.200 1.200 26 H -0.217 1.217 27 H -0.160 1.160 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.191 0.809 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.016 21.513 -6.872 22.785 hybrid contribution -0.773 -0.694 0.285 1.077 sum -3.789 20.819 -6.588 22.163 Atomic orbital electron populations 1.22124 0.91162 1.02757 1.01851 1.21034 0.98124 0.95805 0.80098 0.86737 1.30375 1.23569 1.10304 1.04388 0.83911 1.21745 1.05380 1.00553 0.92660 1.07874 0.78566 0.75150 0.77500 1.93540 1.78579 1.35812 1.87105 1.93554 1.79851 1.68699 1.55470 1.30666 1.13104 1.13246 1.18508 1.21776 0.77847 1.02818 0.99463 1.48319 1.07407 1.55130 1.24303 1.22410 0.86522 0.78409 0.84713 1.90767 1.17100 1.61129 1.73457 1.21870 0.97204 0.95751 0.89265 0.85798 1.59020 1.13919 1.27315 1.34613 1.21349 0.99834 0.92145 0.98944 1.19377 0.96044 0.92837 0.95316 1.21565 1.39133 0.99156 0.96875 0.95269 1.25986 0.94985 0.94533 1.03753 1.70082 1.44348 1.07647 1.37631 0.85656 0.77534 0.80243 0.79129 1.19986 1.21657 1.16038 0.91557 0.91447 0.92726 0.90582 0.88140 0.89600 0.80920 0.84148 0.85713 0.85487 0.83630 0.83992 0.91097 0.94017 0.95534 0.95486 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 7.18 71.98 0.52 -1.73 16 2 C 0.15 2.52 2.78 44.91 0.13 2.64 16 3 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.57 -9.29 2.69 30.49 0.08 -9.21 16 5 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 6 C -0.15 -1.90 8.90 71.98 0.64 -1.26 16 7 S 2.42 46.87 4.66 -56.49 -0.26 46.61 16 8 O -0.95 -21.37 18.02 -127.38 -2.30 -23.66 16 9 O -0.98 -27.26 18.10 -127.38 -2.31 -29.56 16 10 C -0.62 -10.07 6.46 72.05 0.47 -9.60 16 11 C 0.10 1.51 5.54 86.46 0.48 1.99 16 12 N -0.62 -11.15 2.81 -798.57 -2.24 -13.39 16 13 C 0.49 11.41 6.80 87.66 0.60 12.00 16 14 O -0.55 -14.86 11.40 -3.04 -0.03 -14.89 16 15 C 0.07 1.86 2.30 44.17 0.10 1.96 16 16 H 0.12 2.53 6.28 -2.39 -0.01 2.52 16 17 N -0.82 -20.93 8.44 -171.78 -1.45 -22.38 16 18 C -0.08 -2.82 4.61 30.60 0.14 -2.68 16 19 C 0.00 0.07 3.93 29.85 0.12 0.19 16 20 C -0.53 -29.11 9.66 25.60 0.25 -28.87 16 21 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 22 C 0.00 0.21 5.47 84.66 0.46 0.67 16 23 N -0.96 -59.33 13.96 21.45 0.30 -59.03 16 24 Si 0.95 43.20 27.47 68.60 1.88 45.09 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.24 -9.66 6.55 99.48 0.65 -9.01 16 28 H 0.07 1.42 6.64 -2.39 -0.02 1.40 16 29 H 0.07 0.94 6.58 -2.38 -0.02 0.93 16 30 H 0.05 1.27 6.70 -2.39 -0.02 1.26 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.06 6.54 -2.38 -0.02 1.04 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.14 2.55 6.73 -2.39 -0.02 2.53 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.13 1.74 5.16 -2.39 -0.01 1.73 16 38 H 0.35 7.27 9.06 -89.69 -0.81 6.46 16 39 H 0.35 9.41 8.58 -89.70 -0.77 8.64 16 40 H 0.07 2.18 6.02 -2.39 -0.01 2.17 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.03 1.15 7.17 -2.39 -0.02 1.14 16 43 H 0.03 1.08 7.21 -2.39 -0.02 1.06 16 44 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.45 347.90 -3.04 -80.48 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.60 Total: 24.64 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.98 Total: -33.90 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -3.39 Total: -94.80 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -4.64 Total: -68.12 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 46.87 SS G_CDS: -0.26 Total: 46.61 kcal Total: -77.45 -3.04 -80.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.413 kcal (2) G-P(sol) polarization free energy of solvation -77.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds