Wall clock time and date at job start Tue Mar 31 2020 12:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46417 * 2 1 4 4 C 1.53186 * 109.46339 * 240.01854 * 2 1 3 5 5 H 1.09006 * 109.55801 * 61.79358 * 4 2 1 6 6 C 1.52996 * 109.55865 * 301.58086 * 4 2 1 7 7 S 1.81665 * 108.94823 * 181.73713 * 4 2 1 8 8 O 1.42103 * 108.65086 * 169.91407 * 7 4 2 9 9 O 1.42096 * 108.65457 * 301.13365 * 7 4 2 10 10 C 1.81666 * 101.38783 * 55.56714 * 7 4 2 11 11 C 1.53186 * 108.94468 * 304.43721 * 10 7 4 12 12 N 1.46379 * 109.51166 * 58.25649 * 11 10 7 13 13 C 1.34779 * 119.70196 * 115.72631 * 12 11 10 14 14 O 1.21274 * 120.00398 * 185.64981 * 13 12 11 15 15 C 1.50708 * 119.99638 * 5.65218 * 13 12 11 16 16 H 1.09000 * 109.47145 * 40.00111 * 15 13 12 17 17 N 1.46897 * 109.47130 * 160.00170 * 15 13 12 18 18 C 1.53003 * 109.46937 * 279.99988 * 15 13 12 19 19 C 1.52995 * 109.47006 * 175.00253 * 18 15 13 20 20 C 1.50705 * 109.46981 * 179.97438 * 19 18 15 21 21 H 1.07991 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00535 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99819 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46833 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47170 * 119.99678 * 24 22 20 27 27 H 1.48498 * 109.47250 * 239.99977 * 24 22 20 28 28 H 1.09002 * 109.47254 * 174.81180 * 1 2 3 29 29 H 1.09000 * 109.46765 * 294.81004 * 1 2 3 30 30 H 1.09001 * 109.47082 * 54.81189 * 1 2 3 31 31 H 1.08999 * 109.47068 * 60.00120 * 6 4 2 32 32 H 1.09005 * 109.46873 * 180.02562 * 6 4 2 33 33 H 1.09001 * 109.46898 * 299.99794 * 6 4 2 34 34 H 1.09004 * 109.55666 * 64.27122 * 10 7 4 35 35 H 1.09000 * 109.56100 * 184.59571 * 10 7 4 36 36 H 1.09001 * 109.46304 * 178.27088 * 11 10 7 37 37 H 1.09005 * 109.46320 * 298.24270 * 11 10 7 38 38 H 1.00906 * 110.99782 * 296.04537 * 17 15 13 39 39 H 1.00901 * 111.00214 * 59.99268 * 17 15 13 40 40 H 1.09003 * 109.46562 * 295.00190 * 18 15 13 41 41 H 1.08998 * 109.47224 * 54.99981 * 18 15 13 42 42 H 1.08997 * 109.47061 * 299.99671 * 19 18 15 43 43 H 1.08998 * 109.47351 * 59.99806 * 19 18 15 44 44 H 0.97001 * 119.99924 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0404 -0.7218 -1.2511 5 1 1.7043 -0.1905 -2.1415 6 6 1.4992 -2.1526 -1.2735 7 16 3.8563 -0.7588 -1.2111 8 8 4.3159 -1.6245 -2.2400 9 8 4.3371 0.5773 -1.1603 10 6 4.1636 -1.5507 0.3947 11 6 3.4506 -0.7499 1.4887 12 7 2.0177 -0.6898 1.1954 13 6 1.1393 -1.2745 2.0340 14 8 -0.0378 -1.3177 1.7455 15 6 1.6201 -1.8747 3.3301 16 1 2.3777 -1.2272 3.7714 17 7 0.4887 -2.0074 4.2576 18 6 2.2229 -3.2549 3.0603 19 6 2.8226 -3.8110 4.3534 20 6 3.4159 -5.1707 4.0878 21 1 3.3694 -5.5958 3.0962 22 6 4.0179 -5.8718 5.1110 23 7 4.0750 -5.3539 6.3185 24 14 4.7540 -7.5569 4.7817 25 1 4.5609 -7.9106 3.3524 26 1 6.2054 -7.5328 5.0945 27 1 4.0801 -8.5670 5.6365 28 1 -0.3634 -1.0235 -0.0929 29 1 -0.3633 0.4312 0.9328 30 1 -0.3633 0.5922 -0.8399 31 1 0.4096 -2.1287 -1.2880 32 1 1.8636 -2.6649 -2.1640 33 1 1.8393 -2.6837 -0.3845 34 1 3.7779 -2.5701 0.3786 35 1 5.2351 -1.5674 0.5943 36 1 3.6040 -1.2352 2.4526 37 1 3.8572 0.2609 1.5224 38 1 0.1137 -1.1031 4.5022 39 1 -0.2278 -2.6034 3.8711 40 1 1.4439 -3.9279 2.7022 41 1 3.0041 -3.1688 2.3051 42 1 3.6016 -3.1379 4.7114 43 1 2.0414 -3.8970 5.1086 44 1 4.4983 -5.8475 7.0384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326047177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:22 Heat of formation + Delta-G solvation = -86.715481 kcal Electronic energy + Delta-G solvation = -26876.474535 eV Core-core repulsion = 23149.979495 eV Total energy + Delta-G solvation = -3726.495040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02356 -37.49410 -37.14155 -36.27283 -35.85572 -34.12568 -32.86938 -31.39600 -30.23546 -29.29947 -26.64437 -25.60262 -24.14248 -23.81827 -21.61820 -20.44283 -19.54868 -18.52997 -17.50271 -17.11994 -16.73695 -16.36374 -16.22536 -16.05403 -15.86626 -15.31534 -14.65663 -14.38628 -14.08877 -13.90940 -13.59796 -13.50112 -13.13802 -12.92975 -12.65172 -12.40799 -12.37834 -12.29904 -12.27180 -12.08225 -12.03158 -11.93014 -11.64856 -11.35654 -10.98075 -10.96335 -10.72763 -10.57918 -10.30113 -9.94180 -9.67583 -9.39352 -9.08690 -9.06136 -8.40762 -8.26439 -6.01818 -4.04574 -0.26554 2.35102 2.44549 2.60363 3.28719 3.37118 3.37222 3.39972 3.67044 3.95010 4.16450 4.36839 4.43248 4.49462 4.67010 4.73279 4.83151 4.86883 5.03693 5.05906 5.27785 5.34539 5.35422 5.38072 5.45321 5.49928 5.55684 5.64568 5.81627 5.88904 6.05427 6.26350 6.42534 6.48818 6.90643 7.03521 7.33171 7.65328 7.66823 7.85328 8.01711 8.03644 8.38486 9.03486 9.59586 11.08908 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.004416 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.639353 B = 6339.743662 C = 7483.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 H 0.094 0.906 4 C -0.581 4.581 5 H 0.146 0.854 6 C -0.140 4.140 7 S 2.415 3.585 8 O -0.937 6.937 9 O -0.938 6.938 10 C -0.623 4.623 11 C 0.111 3.889 12 N -0.622 5.622 13 C 0.489 3.511 14 O -0.530 6.530 15 C 0.072 3.928 16 H 0.101 0.899 17 N -0.806 5.806 18 C -0.101 4.101 19 C 0.031 3.969 20 C -0.524 4.524 21 H 0.052 0.948 22 C 0.060 3.940 23 N -0.891 5.891 24 Si 0.887 3.113 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.335 0.665 39 H 0.348 0.652 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.036 0.964 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 12.656 -12.924 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.112 0.888 4 C -0.691 4.691 5 H 0.164 0.836 6 C -0.198 4.198 7 S 2.597 3.403 8 O -0.934 6.934 9 O -0.935 6.935 10 C -0.753 4.753 11 C -0.013 4.013 12 N -0.357 5.357 13 C 0.277 3.723 14 O -0.407 6.407 15 C -0.043 4.043 16 H 0.118 0.882 17 N -0.333 5.333 18 C -0.139 4.139 19 C -0.006 4.006 20 C -0.562 4.562 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.530 5.530 24 Si 0.715 3.285 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.210 1.210 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.739 12.560 -13.018 18.472 hybrid contribution -0.445 -0.785 -0.478 1.021 sum -4.184 11.775 -13.497 18.393 Atomic orbital electron populations 1.22283 0.90892 1.04390 1.01313 1.20954 0.98404 0.94588 0.80947 0.88821 1.30501 1.25042 1.06450 1.07140 0.83601 1.21674 1.04082 0.90524 1.03479 1.08241 0.78250 0.75958 0.77826 1.93592 1.78551 1.67754 1.53495 1.93580 1.77951 1.35157 1.86821 1.30617 1.11405 1.13705 1.19588 1.21496 0.78837 1.01139 0.99803 1.48306 1.07004 1.55933 1.24422 1.22841 0.86232 0.76216 0.86974 1.90722 1.17474 1.57055 1.75430 1.21990 0.95475 1.00070 0.86811 0.88158 1.58993 1.12907 1.17867 1.43579 1.21781 0.98909 0.90967 1.02261 1.19017 0.95870 0.94766 0.90914 1.21276 1.36907 1.02657 0.95403 0.92947 1.24977 0.96241 0.97804 0.95160 1.69975 1.44344 1.37928 1.00765 0.86617 0.78896 0.84647 0.78297 1.19843 1.21056 1.21026 0.89268 0.90951 0.93977 0.89709 0.90543 0.91141 0.83670 0.82999 0.85657 0.88665 0.85318 0.83746 0.92631 0.92610 0.96868 0.94608 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 7.32 37.16 0.27 -1.07 16 2 C 0.16 1.48 2.98 -67.90 -0.20 1.27 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.58 -5.07 2.93 -26.64 -0.08 -5.15 16 5 H 0.15 0.96 8.14 -51.92 -0.42 0.54 16 6 C -0.14 -1.32 8.45 37.16 0.31 -1.01 16 7 S 2.41 24.56 4.82 -107.50 -0.52 24.04 16 8 O -0.94 -12.60 17.79 -57.82 -1.03 -13.63 16 9 O -0.94 -11.67 18.02 -57.82 -1.04 -12.71 16 10 C -0.62 -5.68 5.94 37.25 0.22 -5.46 16 11 C 0.11 1.05 5.39 -4.01 -0.02 1.02 16 12 N -0.62 -6.52 2.12 -166.06 -0.35 -6.87 16 13 C 0.49 6.29 6.69 -10.98 -0.07 6.22 16 14 O -0.53 -7.60 11.52 5.56 0.06 -7.54 16 15 C 0.07 1.04 2.29 -68.86 -0.16 0.89 16 16 H 0.10 1.36 6.82 -51.93 -0.35 1.00 16 17 N -0.81 -11.96 8.44 -5.65 -0.05 -12.01 16 18 C -0.10 -1.79 4.42 -26.73 -0.12 -1.91 16 19 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 20 C -0.52 -13.98 9.11 -34.44 -0.31 -14.30 16 21 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 24 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.09 1.05 4.56 -51.93 -0.24 0.81 16 29 H 0.07 0.84 6.77 -51.93 -0.35 0.49 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.79 6.30 -51.93 -0.33 0.47 16 32 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 33 H 0.07 0.72 6.27 -51.93 -0.33 0.40 16 34 H 0.15 1.34 6.38 -51.93 -0.33 1.01 16 35 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.13 1.26 4.69 -51.93 -0.24 1.02 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.33 4.26 9.06 -39.29 -0.36 3.90 16 39 H 0.35 5.23 8.58 -39.29 -0.34 4.90 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.89 5.76 -51.93 -0.30 0.59 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.93 7.75 -51.93 -0.40 0.53 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -34.24 346.67 -8.86 -43.10 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.48 Total: 6.88 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.39 Total: -17.33 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.34 Total: -44.05 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -2.01 Total: -33.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 24.56 SS G_CDS: -0.52 Total: 24.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.24 -8.86 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.619 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds