Wall clock time and date at job start Tue Mar 31 2020 12:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46417 * 2 1 4 4 C 1.53186 * 109.46339 * 240.01854 * 2 1 3 5 5 H 1.09006 * 109.55801 * 61.79358 * 4 2 1 6 6 C 1.52996 * 109.55865 * 301.58086 * 4 2 1 7 7 S 1.81665 * 108.94823 * 181.73713 * 4 2 1 8 8 O 1.42103 * 108.65086 * 169.91407 * 7 4 2 9 9 O 1.42096 * 108.65457 * 301.13365 * 7 4 2 10 10 C 1.81666 * 101.38783 * 55.56714 * 7 4 2 11 11 C 1.53186 * 108.94468 * 304.43721 * 10 7 4 12 12 N 1.46379 * 109.51166 * 58.25649 * 11 10 7 13 13 C 1.34779 * 119.70196 * 115.72631 * 12 11 10 14 14 O 1.21274 * 120.00398 * 185.64981 * 13 12 11 15 15 C 1.50708 * 119.99638 * 5.65218 * 13 12 11 16 16 H 1.09000 * 109.47145 * 40.00111 * 15 13 12 17 17 N 1.46897 * 109.47130 * 160.00170 * 15 13 12 18 18 C 1.53003 * 109.46937 * 279.99988 * 15 13 12 19 19 C 1.52995 * 109.47006 * 175.00253 * 18 15 13 20 20 C 1.50705 * 109.46981 * 179.97438 * 19 18 15 21 21 H 1.07991 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00535 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99819 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46833 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47170 * 119.99678 * 24 22 20 27 27 H 1.48498 * 109.47250 * 239.99977 * 24 22 20 28 28 H 1.09002 * 109.47254 * 174.81180 * 1 2 3 29 29 H 1.09000 * 109.46765 * 294.81004 * 1 2 3 30 30 H 1.09001 * 109.47082 * 54.81189 * 1 2 3 31 31 H 1.08999 * 109.47068 * 60.00120 * 6 4 2 32 32 H 1.09005 * 109.46873 * 180.02562 * 6 4 2 33 33 H 1.09001 * 109.46898 * 299.99794 * 6 4 2 34 34 H 1.09004 * 109.55666 * 64.27122 * 10 7 4 35 35 H 1.09000 * 109.56100 * 184.59571 * 10 7 4 36 36 H 1.09001 * 109.46304 * 178.27088 * 11 10 7 37 37 H 1.09005 * 109.46320 * 298.24270 * 11 10 7 38 38 H 1.00906 * 110.99782 * 296.04537 * 17 15 13 39 39 H 1.00901 * 111.00214 * 59.99268 * 17 15 13 40 40 H 1.09003 * 109.46562 * 295.00190 * 18 15 13 41 41 H 1.08998 * 109.47224 * 54.99981 * 18 15 13 42 42 H 1.08997 * 109.47061 * 299.99671 * 19 18 15 43 43 H 1.08998 * 109.47351 * 59.99806 * 19 18 15 44 44 H 0.97001 * 119.99924 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0404 -0.7218 -1.2511 5 1 1.7043 -0.1905 -2.1415 6 6 1.4992 -2.1526 -1.2735 7 16 3.8563 -0.7588 -1.2111 8 8 4.3159 -1.6245 -2.2400 9 8 4.3371 0.5773 -1.1603 10 6 4.1636 -1.5507 0.3947 11 6 3.4506 -0.7499 1.4887 12 7 2.0177 -0.6898 1.1954 13 6 1.1393 -1.2745 2.0340 14 8 -0.0378 -1.3177 1.7455 15 6 1.6201 -1.8747 3.3301 16 1 2.3777 -1.2272 3.7714 17 7 0.4887 -2.0074 4.2576 18 6 2.2229 -3.2549 3.0603 19 6 2.8226 -3.8110 4.3534 20 6 3.4159 -5.1707 4.0878 21 1 3.3694 -5.5958 3.0962 22 6 4.0179 -5.8718 5.1110 23 7 4.0750 -5.3539 6.3185 24 14 4.7540 -7.5569 4.7817 25 1 4.5609 -7.9106 3.3524 26 1 6.2054 -7.5328 5.0945 27 1 4.0801 -8.5670 5.6365 28 1 -0.3634 -1.0235 -0.0929 29 1 -0.3633 0.4312 0.9328 30 1 -0.3633 0.5922 -0.8399 31 1 0.4096 -2.1287 -1.2880 32 1 1.8636 -2.6649 -2.1640 33 1 1.8393 -2.6837 -0.3845 34 1 3.7779 -2.5701 0.3786 35 1 5.2351 -1.5674 0.5943 36 1 3.6040 -1.2352 2.4526 37 1 3.8572 0.2609 1.5224 38 1 0.1137 -1.1031 4.5022 39 1 -0.2278 -2.6034 3.8711 40 1 1.4439 -3.9279 2.7022 41 1 3.0041 -3.1688 2.3051 42 1 3.6016 -3.1379 4.7114 43 1 2.0414 -3.8970 5.1086 44 1 4.4983 -5.8475 7.0384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326047177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:21 Heat of formation + Delta-G solvation = -113.324195 kcal Electronic energy + Delta-G solvation = -26877.628375 eV Core-core repulsion = 23149.979495 eV Total energy + Delta-G solvation = -3727.648880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97815 -38.43278 -38.05633 -37.17888 -37.08628 -35.23068 -34.58429 -32.20418 -31.91003 -30.14139 -28.11917 -26.54864 -25.34718 -24.89804 -22.79151 -21.82904 -20.50255 -19.43447 -18.58175 -18.21243 -17.95692 -17.49170 -17.26198 -17.01646 -16.71791 -16.49209 -16.35362 -15.56497 -15.14304 -15.00729 -14.49397 -14.36102 -14.23652 -14.00140 -13.92684 -13.60959 -13.49683 -13.34226 -13.29300 -13.19563 -13.05200 -12.82214 -12.80014 -12.67648 -12.43660 -12.25343 -12.08436 -11.80712 -11.66901 -11.42957 -11.10366 -11.06787 -10.53430 -10.42299 -9.93469 -9.43681 -8.12448 -6.21656 -1.06130 1.41295 1.41871 1.44572 1.54647 1.58409 1.73329 2.45141 2.59323 2.85904 3.17492 3.21678 3.35305 3.52785 3.67789 3.71836 3.93999 4.00413 4.06273 4.15755 4.26072 4.32691 4.34162 4.62138 4.64689 4.65295 4.73577 4.81189 4.86292 4.96493 5.04096 5.11840 5.25729 5.29148 5.60323 5.60941 5.88098 6.01834 6.03799 6.22686 6.32628 6.55388 6.98228 7.02665 7.46856 8.98666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.004416 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.639353 B = 6339.743662 C = 7483.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.115 0.885 4 C -0.568 4.568 5 H 0.173 0.827 6 C -0.144 4.144 7 S 2.427 3.573 8 O -0.973 6.973 9 O -0.960 6.960 10 C -0.622 4.622 11 C 0.103 3.897 12 N -0.614 5.614 13 C 0.496 3.504 14 O -0.545 6.545 15 C 0.077 3.923 16 H 0.111 0.889 17 N -0.820 5.820 18 C -0.087 4.087 19 C 0.039 3.961 20 C -0.538 4.538 21 H 0.056 0.944 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.952 3.048 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.284 1.284 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.347 0.653 39 H 0.346 0.654 40 H 0.044 0.956 41 H 0.075 0.925 42 H -0.004 1.004 43 H 0.004 0.996 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 13.240 -14.349 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.133 0.867 4 C -0.680 4.680 5 H 0.191 0.809 6 C -0.202 4.202 7 S 2.613 3.387 8 O -0.970 6.970 9 O -0.958 6.958 10 C -0.753 4.753 11 C -0.020 4.020 12 N -0.348 5.348 13 C 0.284 3.716 14 O -0.422 6.422 15 C -0.039 4.039 16 H 0.129 0.871 17 N -0.349 5.349 18 C -0.126 4.126 19 C 0.002 3.998 20 C -0.576 4.576 21 H 0.075 0.925 22 C -0.193 4.193 23 N -0.570 5.570 24 Si 0.778 3.222 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.210 1.210 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.496 13.167 -14.480 19.881 hybrid contribution -0.552 -0.943 -0.012 1.093 sum -4.048 12.223 -14.492 19.386 Atomic orbital electron populations 1.22176 0.91239 1.03653 1.01437 1.21146 0.98118 0.95525 0.80449 0.86721 1.30417 1.23134 1.06394 1.08066 0.80922 1.21711 1.04232 0.90912 1.03337 1.07726 0.78562 0.74914 0.77475 1.93548 1.79724 1.68427 1.55277 1.93548 1.78872 1.36143 1.87190 1.30612 1.12793 1.13406 1.18478 1.21698 0.78165 1.02688 0.99482 1.48243 1.07174 1.55135 1.24290 1.22307 0.86186 0.76538 0.86610 1.90740 1.18132 1.57817 1.75556 1.21790 0.95550 0.98406 0.88134 0.87118 1.58973 1.13069 1.18782 1.44076 1.21509 0.98968 0.92541 0.99542 1.18826 0.94400 0.93709 0.92876 1.21754 1.36401 1.03961 0.95511 0.92529 1.25813 0.96885 1.01600 0.94997 1.70098 1.45557 1.39588 1.01712 0.85597 0.78087 0.80031 0.78502 1.18786 1.20516 1.20996 0.90845 0.92409 0.91850 0.89521 0.89961 0.92127 0.83736 0.81125 0.86251 0.86131 0.83976 0.84037 0.93727 0.90705 0.98530 0.97780 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 7.32 71.98 0.53 -1.80 16 2 C 0.15 2.46 2.98 45.08 0.13 2.59 16 3 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.57 -8.45 2.93 30.66 0.09 -8.36 16 5 H 0.17 1.68 8.14 -2.38 -0.02 1.66 16 6 C -0.14 -2.46 8.45 71.98 0.61 -1.85 16 7 S 2.43 44.63 4.82 -56.49 -0.27 44.36 16 8 O -0.97 -24.96 17.79 -127.38 -2.27 -27.23 16 9 O -0.96 -21.82 18.02 -127.38 -2.30 -24.12 16 10 C -0.62 -10.04 5.94 72.04 0.43 -9.61 16 11 C 0.10 1.70 5.39 86.46 0.47 2.16 16 12 N -0.61 -11.57 2.12 -797.69 -1.69 -13.26 16 13 C 0.50 12.09 6.69 87.66 0.59 12.68 16 14 O -0.54 -15.05 11.52 -3.01 -0.03 -15.08 16 15 C 0.08 2.16 2.29 44.17 0.10 2.26 16 16 H 0.11 2.88 6.82 -2.39 -0.02 2.87 16 17 N -0.82 -24.33 8.44 -171.79 -1.45 -25.78 16 18 C -0.09 -3.07 4.42 30.59 0.14 -2.94 16 19 C 0.04 1.87 4.86 29.85 0.15 2.02 16 20 C -0.54 -28.78 9.11 25.60 0.23 -28.55 16 21 H 0.06 2.91 7.74 -2.92 -0.02 2.89 16 22 C 0.00 0.27 5.46 84.65 0.46 0.74 16 23 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 24 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 H 0.07 1.60 4.56 -2.39 -0.01 1.59 16 29 H 0.06 1.24 6.77 -2.39 -0.02 1.23 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.47 6.30 -2.39 -0.02 1.46 16 32 H 0.08 1.30 8.00 -2.38 -0.02 1.28 16 33 H 0.06 1.15 6.27 -2.39 -0.01 1.14 16 34 H 0.14 2.41 6.38 -2.39 -0.02 2.40 16 35 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.12 2.17 4.69 -2.39 -0.01 2.16 16 37 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.35 8.68 9.06 -89.69 -0.81 7.87 16 39 H 0.35 10.47 8.58 -89.69 -0.77 9.70 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 2.31 5.76 -2.39 -0.01 2.30 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.00 0.20 7.75 -2.39 -0.02 0.19 16 44 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -73.47 346.67 -2.32 -75.79 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.54 Total: 25.39 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.92 Total: -30.65 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -2.86 Total: -93.54 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -4.60 Total: -66.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.27 Total: 44.36 kcal Total: -73.47 -2.32 -75.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326047177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.529 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds