Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.47032 * 2 1 4 4 C 1.35921 * 117.00194 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.92925 * 0.02562 * 4 3 2 6 6 C 1.37911 * 120.14870 * 180.02562 * 5 4 3 7 7 C 1.39597 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.47774 * 120.06760 * 179.97438 * 7 6 5 9 9 N 1.31275 * 126.38669 * 180.02562 * 8 7 6 10 10 N 1.28657 * 109.25399 * 179.97438 * 9 8 7 11 11 C 1.30350 * 109.53752 * 0.02562 * 10 9 8 12 12 C 1.50708 * 126.18080 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47140 * 89.97337 * 12 11 10 14 14 C 1.50704 * 109.47144 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99955 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00017 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47167 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47006 * 120.00111 * 18 16 14 21 21 H 1.48496 * 109.47561 * 240.00414 * 18 16 14 22 22 O 1.34452 * 107.63442 * 359.77072 * 11 10 9 23 23 C 1.39605 * 119.86289 * 359.97438 * 7 6 5 24 24 C 1.38251 * 119.85502 * 359.97438 * 23 7 6 25 25 O 1.35991 * 120.00244 * 179.97438 * 24 23 7 26 26 C 1.42899 * 117.00469 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47200 * 299.99918 * 1 2 3 28 28 H 1.09002 * 109.46863 * 59.99985 * 1 2 3 29 29 H 1.08996 * 109.46672 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47404 * 240.00764 * 2 1 3 31 31 H 1.08993 * 109.47457 * 120.00003 * 2 1 3 32 32 H 1.08003 * 119.92971 * 359.75107 * 5 4 3 33 33 H 1.08006 * 119.99681 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46335 * 209.97022 * 12 11 10 35 35 H 1.08996 * 109.46779 * 329.96560 * 12 11 10 36 36 H 1.08997 * 109.47285 * 299.99574 * 13 12 11 37 37 H 1.09005 * 109.47679 * 59.99976 * 13 12 11 38 38 H 0.97007 * 120.00168 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.07243 * 179.97438 * 23 7 6 40 40 H 1.08998 * 109.47701 * 180.02562 * 26 25 24 41 41 H 1.09003 * 109.47067 * 300.00324 * 26 25 24 42 42 H 1.09003 * 109.46905 * 60.00128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3538 1.5255 0.0005 5 6 4.1976 0.4244 0.0005 6 6 5.5655 0.5999 0.0016 7 6 6.1039 1.8878 0.0033 8 6 7.5694 2.0776 0.0050 9 7 8.2060 3.2257 0.0071 10 7 9.4740 3.0078 0.0087 11 6 9.6955 1.7232 0.0071 12 6 11.0454 1.0532 0.0086 13 6 11.4998 0.8248 1.4515 14 6 12.8494 0.1543 1.4531 15 1 13.3347 -0.0847 0.5183 16 6 13.4651 -0.1532 2.6478 17 7 12.8744 0.1381 3.7861 18 14 15.1377 -0.9851 2.6496 19 1 15.5830 -1.2043 1.2501 20 1 16.1198 -0.1201 3.3514 21 1 15.0401 -2.2915 3.3488 22 8 8.5020 1.1041 0.0095 23 6 5.2550 2.9961 0.0033 24 6 3.8846 2.8134 0.0011 25 8 3.0550 3.8909 0.0017 26 6 3.6679 5.1818 0.0039 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7824 -0.5727 0.0041 33 1 6.2201 -0.2592 0.0020 34 1 10.9760 0.0951 -0.5065 35 1 11.7673 1.6894 -0.5034 36 1 11.5692 1.7829 1.9666 37 1 10.7778 0.1885 1.9635 38 1 13.3074 -0.0786 4.6266 39 1 5.6679 3.9941 0.0050 40 1 2.8955 5.9508 0.0046 41 1 4.2870 5.2885 0.8947 42 1 4.2888 5.2907 -0.8853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326972084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = -22.879340 kcal Electronic energy + Delta-G solvation = -25255.113639 eV Core-core repulsion = 21395.942791 eV Total energy + Delta-G solvation = -3859.170848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75660 -40.85102 -38.85524 -37.36151 -35.78965 -34.43529 -32.74016 -32.06462 -31.07310 -30.35828 -28.72874 -27.49514 -25.76845 -24.55295 -23.62168 -22.86900 -21.91470 -21.45448 -20.76577 -19.01593 -17.89340 -17.07764 -16.78404 -16.63535 -16.55260 -16.23448 -15.74615 -15.41785 -15.07661 -14.57772 -14.55134 -14.00055 -13.64232 -13.39871 -13.34334 -13.01643 -12.73271 -12.58973 -12.39871 -12.29307 -12.06373 -11.68423 -11.63069 -11.54651 -11.37438 -11.36637 -11.15695 -11.06388 -10.80047 -10.64407 -10.16044 -10.03792 -9.44973 -9.30372 -8.82728 -8.48229 -7.93023 -6.11928 -4.17005 0.47193 1.01484 1.84521 2.47710 2.74592 2.80534 2.98909 3.26051 3.33735 3.37201 3.47509 4.00452 4.35934 4.40539 4.54565 4.57801 4.67395 4.79255 4.81124 4.85464 4.91688 4.99658 5.02564 5.20021 5.24583 5.29728 5.35335 5.40889 5.46376 5.52885 5.65192 5.79386 5.85096 5.96458 6.14331 6.17543 6.18972 6.23103 6.58065 6.73313 7.23510 7.45583 7.53366 7.83433 8.18435 8.63950 8.88447 9.48101 10.99332 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002336 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.174090 B =11984.521483 C =12863.739486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.302 6.302 4 C 0.121 3.879 5 C -0.175 4.175 6 C -0.079 4.079 7 C -0.008 4.008 8 C 0.180 3.820 9 N -0.275 5.275 10 N -0.300 5.300 11 C 0.204 3.796 12 C -0.026 4.026 13 C 0.027 3.973 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.220 6.220 23 C -0.127 4.127 24 C 0.099 3.901 25 O -0.304 6.304 26 C 0.022 3.978 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.152 0.848 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.309 1.383 -9.059 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.215 6.215 4 C 0.074 3.926 5 C -0.193 4.193 6 C -0.099 4.099 7 C -0.010 4.010 8 C -0.028 4.028 9 N -0.123 5.123 10 N -0.147 5.147 11 C -0.004 4.004 12 C -0.064 4.064 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.099 6.099 23 C -0.147 4.147 24 C 0.053 3.947 25 O -0.217 6.217 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.170 0.830 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.405 2.814 -8.869 26.118 hybrid contribution 1.096 -1.762 0.244 2.090 sum -23.308 1.052 -8.625 24.875 Atomic orbital electron populations 1.21764 0.92572 1.02854 1.03652 1.22868 0.96119 0.81905 1.01619 1.86169 1.17851 1.29167 1.88349 1.18371 0.83278 0.91049 0.99859 1.20956 0.93185 0.97869 1.07330 1.21004 0.94761 0.96146 0.97967 1.16777 0.83750 0.93918 1.06570 1.25098 0.92039 0.82416 1.03252 1.74587 0.99015 1.22385 1.16351 1.74404 1.06989 1.13878 1.19387 1.29013 0.88220 0.88473 0.94720 1.20783 0.81937 0.99336 1.04392 1.19182 0.96795 0.98169 0.86990 1.21100 1.02728 1.39746 0.92829 0.91954 1.25025 0.98085 0.95702 0.95501 1.69980 1.38483 1.47036 0.97415 0.86438 0.83644 0.79109 0.78238 1.19550 1.20874 1.20926 1.84859 1.16235 1.38960 1.69883 1.21009 0.90429 0.99992 1.03232 1.17924 0.88288 0.85733 1.02765 1.86172 1.33425 1.13073 1.89074 1.23150 1.00053 0.82177 1.01903 0.91429 0.91474 0.90311 0.91807 0.91748 0.83850 0.84254 0.89426 0.87837 0.95368 0.95984 0.92762 0.83008 0.88001 0.92240 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.34 5.46 37.16 0.20 0.55 16 3 O -0.30 -3.24 9.91 -34.17 -0.34 -3.58 16 4 C 0.12 1.39 6.70 -39.01 -0.26 1.12 16 5 C -0.17 -1.76 9.02 -39.52 -0.36 -2.12 16 6 C -0.08 -0.94 9.72 -39.19 -0.38 -1.32 16 7 C -0.01 -0.11 5.87 -104.98 -0.62 -0.73 16 8 C 0.18 3.16 7.99 -13.89 -0.11 3.05 16 9 N -0.28 -5.34 11.91 32.06 0.38 -4.96 16 10 N -0.30 -6.31 12.22 32.58 0.40 -5.91 16 11 C 0.20 4.10 7.73 -12.90 -0.10 4.00 16 12 C -0.03 -0.51 5.78 -27.88 -0.16 -0.68 16 13 C 0.03 0.67 4.96 -27.88 -0.14 0.53 16 14 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 O -0.22 -4.12 10.66 3.88 0.04 -4.07 16 23 C -0.13 -1.61 8.68 -39.07 -0.34 -1.95 16 24 C 0.10 1.20 6.69 -39.18 -0.26 0.94 16 25 O -0.30 -3.53 10.27 -34.39 -0.35 -3.88 16 26 C 0.02 0.18 9.81 101.05 0.99 1.17 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.14 1.02 6.27 -52.48 -0.33 0.70 16 33 H 0.14 1.53 7.93 -52.48 -0.42 1.12 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.15 1.83 6.09 -52.49 -0.32 1.51 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.99 364.47 -5.80 -38.79 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.58 Total: -3.47 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.56 Total: -8.81 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.52 Total: -36.44 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.65 Total: -11.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.99 -5.80 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326972084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.915 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds