Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.47032 * 2 1 4 4 C 1.35921 * 117.00194 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.92925 * 0.02562 * 4 3 2 6 6 C 1.37911 * 120.14870 * 180.02562 * 5 4 3 7 7 C 1.39597 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.47774 * 120.06760 * 179.97438 * 7 6 5 9 9 N 1.31275 * 126.38669 * 180.02562 * 8 7 6 10 10 N 1.28657 * 109.25399 * 179.97438 * 9 8 7 11 11 C 1.30350 * 109.53752 * 0.02562 * 10 9 8 12 12 C 1.50708 * 126.18080 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47140 * 89.97337 * 12 11 10 14 14 C 1.50704 * 109.47144 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99955 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00017 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47167 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47006 * 120.00111 * 18 16 14 21 21 H 1.48496 * 109.47561 * 240.00414 * 18 16 14 22 22 O 1.34452 * 107.63442 * 359.77072 * 11 10 9 23 23 C 1.39605 * 119.86289 * 359.97438 * 7 6 5 24 24 C 1.38251 * 119.85502 * 359.97438 * 23 7 6 25 25 O 1.35991 * 120.00244 * 179.97438 * 24 23 7 26 26 C 1.42899 * 117.00469 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47200 * 299.99918 * 1 2 3 28 28 H 1.09002 * 109.46863 * 59.99985 * 1 2 3 29 29 H 1.08996 * 109.46672 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47404 * 240.00764 * 2 1 3 31 31 H 1.08993 * 109.47457 * 120.00003 * 2 1 3 32 32 H 1.08003 * 119.92971 * 359.75107 * 5 4 3 33 33 H 1.08006 * 119.99681 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46335 * 209.97022 * 12 11 10 35 35 H 1.08996 * 109.46779 * 329.96560 * 12 11 10 36 36 H 1.08997 * 109.47285 * 299.99574 * 13 12 11 37 37 H 1.09005 * 109.47679 * 59.99976 * 13 12 11 38 38 H 0.97007 * 120.00168 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.07243 * 179.97438 * 23 7 6 40 40 H 1.08998 * 109.47701 * 180.02562 * 26 25 24 41 41 H 1.09003 * 109.47067 * 300.00324 * 26 25 24 42 42 H 1.09003 * 109.46905 * 60.00128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3538 1.5255 0.0005 5 6 4.1976 0.4244 0.0005 6 6 5.5655 0.5999 0.0016 7 6 6.1039 1.8878 0.0033 8 6 7.5694 2.0776 0.0050 9 7 8.2060 3.2257 0.0071 10 7 9.4740 3.0078 0.0087 11 6 9.6955 1.7232 0.0071 12 6 11.0454 1.0532 0.0086 13 6 11.4998 0.8248 1.4515 14 6 12.8494 0.1543 1.4531 15 1 13.3347 -0.0847 0.5183 16 6 13.4651 -0.1532 2.6478 17 7 12.8744 0.1381 3.7861 18 14 15.1377 -0.9851 2.6496 19 1 15.5830 -1.2043 1.2501 20 1 16.1198 -0.1201 3.3514 21 1 15.0401 -2.2915 3.3488 22 8 8.5020 1.1041 0.0095 23 6 5.2550 2.9961 0.0033 24 6 3.8846 2.8134 0.0011 25 8 3.0550 3.8909 0.0017 26 6 3.6679 5.1818 0.0039 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7824 -0.5727 0.0041 33 1 6.2201 -0.2592 0.0020 34 1 10.9760 0.0951 -0.5065 35 1 11.7673 1.6894 -0.5034 36 1 11.5692 1.7829 1.9666 37 1 10.7778 0.1885 1.9635 38 1 13.3074 -0.0786 4.6266 39 1 5.6679 3.9941 0.0050 40 1 2.8955 5.9508 0.0046 41 1 4.2870 5.2885 0.8947 42 1 4.2888 5.2907 -0.8853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326972084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = -46.279267 kcal Electronic energy + Delta-G solvation = -25256.128336 eV Core-core repulsion = 21395.942791 eV Total energy + Delta-G solvation = -3860.185545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.23744 -41.71286 -39.64197 -38.27506 -37.28369 -36.27368 -34.25263 -33.10959 -32.17228 -31.31455 -30.04908 -28.33530 -27.54903 -25.45879 -24.78171 -24.33889 -23.09254 -22.58457 -22.20651 -19.90603 -18.91687 -18.72306 -18.28379 -17.81918 -17.54048 -17.30399 -16.58545 -16.50942 -16.45608 -15.92067 -15.64163 -15.31300 -15.03073 -14.40375 -14.29596 -14.19255 -13.82575 -13.59772 -13.52307 -13.29681 -13.23797 -13.09478 -12.95555 -12.90055 -12.60989 -12.48766 -12.30902 -12.23629 -12.04826 -11.94036 -11.86031 -11.69718 -11.35240 -10.74804 -10.60894 -9.87901 -8.92699 -8.23136 -6.35962 -0.67366 0.11629 0.52345 1.08378 1.31707 1.44146 1.44987 1.58270 2.07798 2.20752 2.40719 2.49003 2.69605 3.11999 3.30054 3.57354 3.75410 3.81763 3.97638 4.05965 4.10335 4.19045 4.26971 4.30008 4.36268 4.36428 4.42388 4.47125 4.50649 4.53588 4.70691 4.80078 4.85956 4.87463 4.98185 4.98926 5.17982 5.27630 5.34455 5.38163 5.47542 5.74038 5.97510 6.09097 6.42857 6.79707 7.14643 7.34511 8.89604 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002336 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.174090 B =11984.521483 C =12863.739486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.316 6.316 4 C 0.127 3.873 5 C -0.164 4.164 6 C -0.072 4.072 7 C -0.041 4.041 8 C 0.200 3.800 9 N -0.303 5.303 10 N -0.321 5.321 11 C 0.191 3.809 12 C -0.011 4.011 13 C 0.033 3.967 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.254 1.254 20 H -0.282 1.282 21 H -0.280 1.280 22 O -0.222 6.222 23 C -0.125 4.125 24 C 0.088 3.912 25 O -0.317 6.317 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.179 0.821 33 H 0.149 0.851 34 H 0.112 0.888 35 H 0.117 0.883 36 H -0.007 1.007 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.320 -0.261 -10.213 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.230 6.230 4 C 0.079 3.921 5 C -0.183 4.183 6 C -0.092 4.092 7 C -0.043 4.043 8 C -0.008 4.008 9 N -0.150 5.150 10 N -0.167 5.167 11 C -0.019 4.019 12 C -0.049 4.049 13 C -0.005 4.005 14 C -0.576 4.576 15 H 0.097 0.903 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.177 1.177 20 H -0.208 1.208 21 H -0.205 1.205 22 O -0.102 6.102 23 C -0.145 4.145 24 C 0.042 3.958 25 O -0.231 6.231 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.435 1.188 -10.047 27.373 hybrid contribution 1.119 -1.237 0.609 1.776 sum -24.316 -0.049 -9.437 26.083 Atomic orbital electron populations 1.21804 0.91547 1.04217 1.03112 1.23246 0.97030 0.80333 1.03060 1.86178 1.17225 1.31771 1.87845 1.18603 0.84041 0.91100 0.98336 1.21248 0.92079 0.99121 1.05820 1.21183 0.95783 0.95399 0.96855 1.16938 0.81874 0.95512 1.10022 1.25793 0.93125 0.81645 1.00207 1.74535 0.98526 1.23255 1.18705 1.74323 1.08102 1.14559 1.19694 1.28857 0.88630 0.88375 0.96000 1.20534 0.82274 1.00999 1.01082 1.18966 0.96084 0.95558 0.89869 1.21582 1.03331 1.39169 0.93544 0.90271 1.26048 1.02390 0.96447 0.95110 1.70129 1.40558 1.48635 0.98223 0.85276 0.78282 0.77729 0.79015 1.17721 1.20833 1.20526 1.84847 1.16095 1.39136 1.70100 1.20984 0.90715 0.99714 1.03053 1.18072 0.88065 0.86599 1.03084 1.86158 1.33974 1.13952 1.89031 1.23390 1.01070 0.81345 1.02110 0.92090 0.91922 0.87979 0.90126 0.90405 0.80400 0.83322 0.86942 0.86499 0.98908 0.98630 0.92690 0.83094 0.85549 0.92253 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 71.98 0.74 -0.49 16 2 C 0.04 0.41 5.46 71.98 0.39 0.80 16 3 O -0.32 -6.14 9.91 -78.62 -0.78 -6.92 16 4 C 0.13 2.67 6.70 22.64 0.15 2.82 16 5 C -0.16 -2.89 9.02 22.31 0.20 -2.69 16 6 C -0.07 -1.61 9.72 22.52 0.22 -1.39 16 7 C -0.04 -1.15 5.87 -20.10 -0.12 -1.27 16 8 C 0.20 7.12 7.99 87.30 0.70 7.82 16 9 N -0.30 -12.08 11.91 -166.30 -1.98 -14.06 16 10 N -0.32 -13.84 12.22 -165.31 -2.02 -15.86 16 11 C 0.19 7.80 7.73 88.33 0.68 8.48 16 12 C -0.01 -0.42 5.78 29.85 0.17 -0.25 16 13 C 0.03 1.73 4.96 29.85 0.15 1.87 16 14 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 15 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.94 -56.50 13.29 21.44 0.28 -56.21 16 18 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 O -0.22 -8.37 10.66 -9.04 -0.10 -8.46 16 23 C -0.12 -3.16 8.68 22.60 0.20 -2.97 16 24 C 0.09 2.07 6.69 22.53 0.15 2.22 16 25 O -0.32 -7.14 10.27 -79.41 -0.82 -7.96 16 26 C 0.02 0.23 9.81 113.37 1.11 1.35 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.62 7.66 -2.39 -0.02 0.61 16 31 H 0.08 0.66 7.65 -2.39 -0.02 0.64 16 32 H 0.18 1.83 6.27 -2.91 -0.02 1.81 16 33 H 0.15 3.00 7.93 -2.91 -0.02 2.98 16 34 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 35 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 38 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 39 H 0.15 3.74 6.09 -2.91 -0.02 3.72 16 40 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 42 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 Total: -1.00 -72.75 364.47 3.10 -69.65 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.04 Total: 7.18 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.44 Total: -12.19 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.72 Total: -86.14 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.69 Total: -23.34 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.75 3.10 -69.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326972084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.369 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds