Wall clock time and date at job start Tue Mar 31 2020 12:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99822 * 2 1 4 4 C 1.53001 * 109.47377 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47256 * 64.99408 * 4 3 2 6 6 C 1.42899 * 114.00097 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47060 * 30.00359 * 6 5 4 8 8 C 1.53000 * 109.47375 * 270.00414 * 6 5 4 9 9 C 1.50699 * 109.47129 * 150.00258 * 6 5 4 10 10 N 1.30385 * 126.18737 * 45.02492 * 9 6 5 11 11 N 1.28666 * 109.52379 * 179.97438 * 10 9 6 12 12 C 1.31231 * 109.25073 * 0.02562 * 11 10 9 13 13 C 1.47866 * 126.37950 * 180.02562 * 12 11 10 14 14 C 1.39929 * 120.02465 * 179.74287 * 13 12 11 15 15 C 1.38335 * 120.36106 * 179.78137 * 14 13 12 16 16 C 1.37748 * 120.40195 * 0.48012 * 15 14 13 17 17 C 1.40773 * 120.03603 * 359.77840 * 16 15 14 18 18 C 1.41433 * 120.17539 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00269 * 334.92907 * 18 17 16 20 20 C 1.39928 * 119.99818 * 154.93205 * 18 17 16 21 21 N 1.30825 * 120.00124 * 342.57873 * 20 18 17 22 22 Si 1.86806 * 119.99833 * 162.57245 * 20 18 17 23 23 H 1.48501 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47100 * 120.00272 * 22 20 18 25 25 H 1.48497 * 109.47080 * 240.00398 * 22 20 18 26 26 C 1.38965 * 120.02506 * 0.02562 * 13 12 11 27 27 O 1.34408 * 126.18779 * 224.71658 * 9 6 5 28 28 H 1.08997 * 109.46544 * 60.00640 * 1 2 3 29 29 H 1.09001 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47201 * 299.99930 * 1 2 3 31 31 H 1.08996 * 109.47455 * 59.99601 * 3 2 1 32 32 H 1.08998 * 109.47000 * 299.99812 * 3 2 1 33 33 H 1.09001 * 109.46777 * 304.99683 * 4 3 2 34 34 H 1.09004 * 109.47433 * 185.00276 * 4 3 2 35 35 H 1.09002 * 109.47151 * 59.99889 * 8 6 5 36 36 H 1.08995 * 109.47230 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.47109 * 300.00063 * 8 6 5 38 38 H 1.08003 * 119.82090 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.80157 * 180.22936 * 15 14 13 40 40 H 1.07998 * 119.98294 * 179.76072 * 16 15 14 41 41 H 0.97000 * 119.99991 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.19624 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3245 7 1 5.8043 0.2822 -0.3294 8 6 5.9902 1.6654 -1.9704 9 6 5.6898 -0.7878 -2.1723 10 7 5.1240 -1.0978 -3.3053 11 7 5.6306 -2.1923 -3.7536 12 6 6.5439 -2.6218 -2.9148 13 6 7.3618 -3.8451 -3.0596 14 6 8.3065 -4.1755 -2.0817 15 6 9.0723 -5.3207 -2.2079 16 6 8.9207 -6.1436 -3.3022 17 6 7.9790 -5.8244 -4.2987 18 6 7.8206 -6.6675 -5.4232 19 1 8.6365 -7.2977 -5.7449 20 6 6.6067 -6.6849 -6.1190 21 7 5.5254 -6.2052 -5.5602 22 14 6.5301 -7.3932 -7.8459 23 1 7.8790 -7.8676 -8.2466 24 1 5.5773 -8.5318 -7.8721 25 1 6.0730 -6.3434 -8.7916 26 6 7.1969 -4.6644 -4.1699 27 8 6.6023 -1.7364 -1.9001 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5684 0.8410 34 1 3.9785 2.1767 0.0890 35 1 5.7669 2.5385 -1.3571 36 1 7.0703 1.5428 -2.0490 37 1 5.5670 1.8026 -2.9655 38 1 8.4359 -3.5351 -1.2217 39 1 9.7962 -5.5690 -1.4459 40 1 9.5248 -7.0339 -3.3957 41 1 4.6840 -6.2169 -6.0427 42 1 6.4718 -4.4109 -4.9292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328476995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:43 Heat of formation + Delta-G solvation = -34.107938 kcal Electronic energy + Delta-G solvation = -25622.626550 eV Core-core repulsion = 21762.968793 eV Total energy + Delta-G solvation = -3859.657757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.53315 -38.91801 -37.71168 -37.55457 -35.56826 -33.88154 -33.04415 -31.25618 -29.93795 -29.74157 -28.32779 -26.49782 -25.48038 -24.55275 -23.46331 -22.79675 -21.64546 -20.70209 -20.40851 -17.73641 -17.34779 -17.00335 -16.85104 -16.59507 -15.76360 -15.74689 -15.38186 -15.07072 -14.80334 -14.62479 -14.40517 -13.43474 -13.20065 -13.12354 -12.86901 -12.64451 -12.52091 -12.38206 -11.93762 -11.88184 -11.77988 -11.46127 -11.36857 -11.28112 -11.22115 -11.12919 -10.85320 -10.57491 -10.42583 -10.04479 -9.90437 -9.84494 -9.74453 -9.51841 -9.14855 -7.61131 -7.48799 -6.84118 -4.47188 1.32506 2.34357 2.56062 2.75291 3.07251 3.10390 3.12996 3.37438 3.52402 3.62701 3.89797 4.20925 4.52642 4.54615 4.75014 4.76806 4.91104 4.99593 5.06382 5.10563 5.15099 5.20297 5.36570 5.41742 5.48670 5.49630 5.50921 5.73986 5.90685 6.03097 6.09436 6.12443 6.28632 6.65952 6.82735 6.90290 6.96241 6.98191 7.14899 7.28470 7.61004 7.75937 7.86434 8.06923 8.40828 8.72949 8.75029 8.92627 10.10390 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002930 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.101317 B = 9554.297258 C =10503.458253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.198 3.802 7 H 0.089 0.911 8 C -0.168 4.168 9 C 0.118 3.882 10 N -0.252 5.252 11 N -0.292 5.292 12 C 0.253 3.747 13 C -0.029 4.029 14 C -0.214 4.214 15 C -0.092 4.092 16 C -0.207 4.207 17 C 0.102 3.898 18 C -0.456 4.456 19 H 0.084 0.916 20 C 0.073 3.927 21 N -0.781 5.781 22 Si 0.911 3.089 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.270 1.270 26 C -0.096 4.096 27 O -0.224 6.224 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.286 0.714 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 14.702 10.298 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.272 6.272 6 C 0.138 3.862 7 H 0.106 0.894 8 C -0.225 4.225 9 C -0.093 4.093 10 N -0.101 5.101 11 N -0.139 5.139 12 C 0.048 3.952 13 C -0.032 4.032 14 C -0.235 4.235 15 C -0.110 4.110 16 C -0.228 4.228 17 C 0.099 3.901 18 C -0.485 4.485 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.405 5.405 22 Si 0.735 3.265 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.195 1.195 26 C -0.117 4.117 27 O -0.105 6.105 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.484 14.594 9.077 18.040 hybrid contribution 0.435 -0.081 0.602 0.747 sum -5.049 14.513 9.679 18.161 Atomic orbital electron populations 1.22750 0.80980 1.03045 0.99711 1.88015 1.19680 1.26985 1.95331 1.22535 0.92014 0.85827 1.00957 1.22682 0.93863 0.97738 0.87318 1.88123 1.19480 1.81800 1.37812 1.19787 0.83336 0.86981 0.96118 0.89360 1.22269 1.01535 0.95741 1.02995 1.27128 0.91310 0.94148 0.96714 1.74309 1.20433 1.07800 1.07526 1.74901 1.09360 1.05350 1.24308 1.26340 0.95515 0.91661 0.81717 1.17216 0.97458 0.89109 0.99367 1.20329 1.02060 1.00962 1.00193 1.20423 0.98487 0.94624 0.97514 1.21163 1.05267 1.00711 0.95625 1.17526 0.90143 0.90635 0.91794 1.19614 0.98568 1.20844 1.09440 0.89779 1.25982 0.95003 0.93977 0.99715 1.69772 1.00119 1.33599 1.36968 0.86213 0.79506 0.79206 0.81600 1.18311 1.19872 1.19452 1.21578 1.01296 0.92778 0.96022 1.84782 1.50412 1.30066 1.45213 0.93917 0.89489 0.94296 0.91689 0.92127 0.91996 0.91227 0.90809 0.90813 0.90339 0.88569 0.88376 0.88185 0.90253 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.84 10.67 -40.08 -0.43 -5.27 16 3 C 0.06 0.59 6.32 37.16 0.23 0.82 16 4 C 0.06 0.57 6.13 37.16 0.23 0.80 16 5 O -0.35 -4.96 9.94 -40.08 -0.40 -5.36 16 6 C 0.20 2.62 3.27 -27.88 -0.09 2.53 16 7 H 0.09 0.94 7.79 -51.93 -0.40 0.53 16 8 C -0.17 -1.73 9.51 37.16 0.35 -1.37 16 9 C 0.12 2.24 7.36 -12.89 -0.09 2.14 16 10 N -0.25 -5.60 12.22 32.58 0.40 -5.20 16 11 N -0.29 -7.18 11.90 32.07 0.38 -6.80 16 12 C 0.25 5.96 7.99 -13.87 -0.11 5.85 16 13 C -0.03 -0.71 5.87 -105.05 -0.62 -1.33 16 14 C -0.21 -4.78 9.73 -38.91 -0.38 -5.16 16 15 C -0.09 -1.98 10.01 -39.72 -0.40 -2.38 16 16 C -0.21 -4.84 9.78 -38.80 -0.38 -5.22 16 17 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 18 C -0.46 -11.70 9.05 -37.73 -0.34 -12.05 16 19 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 20 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 21 N -0.78 -20.39 10.97 55.55 0.61 -19.78 16 22 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.10 -2.53 8.33 -38.46 -0.32 -2.85 16 27 O -0.22 -4.63 10.66 4.04 0.04 -4.58 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.10 1.93 7.92 -52.48 -0.42 1.51 16 39 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 42 H 0.14 3.88 5.98 -52.48 -0.31 3.56 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -31.69 367.14 -6.10 -37.80 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.73 Total: 3.22 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.49 Total: -13.04 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 1.39 Total: -31.78 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.78 Total: -15.22 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.69 -6.10 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328476995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.689 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds