Wall clock time and date at job start Tue Mar 31 2020 12:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99822 * 2 1 4 4 C 1.53001 * 109.47377 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47256 * 64.99408 * 4 3 2 6 6 C 1.42899 * 114.00097 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47060 * 30.00359 * 6 5 4 8 8 C 1.53000 * 109.47375 * 270.00414 * 6 5 4 9 9 C 1.50699 * 109.47129 * 150.00258 * 6 5 4 10 10 N 1.30385 * 126.18737 * 45.02492 * 9 6 5 11 11 N 1.28666 * 109.52379 * 179.97438 * 10 9 6 12 12 C 1.31231 * 109.25073 * 0.02562 * 11 10 9 13 13 C 1.47866 * 126.37950 * 180.02562 * 12 11 10 14 14 C 1.39929 * 120.02465 * 179.74287 * 13 12 11 15 15 C 1.38335 * 120.36106 * 179.78137 * 14 13 12 16 16 C 1.37748 * 120.40195 * 0.48012 * 15 14 13 17 17 C 1.40773 * 120.03603 * 359.77840 * 16 15 14 18 18 C 1.41433 * 120.17539 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00269 * 334.92907 * 18 17 16 20 20 C 1.39928 * 119.99818 * 154.93205 * 18 17 16 21 21 N 1.30825 * 120.00124 * 342.57873 * 20 18 17 22 22 Si 1.86806 * 119.99833 * 162.57245 * 20 18 17 23 23 H 1.48501 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47100 * 120.00272 * 22 20 18 25 25 H 1.48497 * 109.47080 * 240.00398 * 22 20 18 26 26 C 1.38965 * 120.02506 * 0.02562 * 13 12 11 27 27 O 1.34408 * 126.18779 * 224.71658 * 9 6 5 28 28 H 1.08997 * 109.46544 * 60.00640 * 1 2 3 29 29 H 1.09001 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47201 * 299.99930 * 1 2 3 31 31 H 1.08996 * 109.47455 * 59.99601 * 3 2 1 32 32 H 1.08998 * 109.47000 * 299.99812 * 3 2 1 33 33 H 1.09001 * 109.46777 * 304.99683 * 4 3 2 34 34 H 1.09004 * 109.47433 * 185.00276 * 4 3 2 35 35 H 1.09002 * 109.47151 * 59.99889 * 8 6 5 36 36 H 1.08995 * 109.47230 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.47109 * 300.00063 * 8 6 5 38 38 H 1.08003 * 119.82090 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.80157 * 180.22936 * 15 14 13 40 40 H 1.07998 * 119.98294 * 179.76072 * 16 15 14 41 41 H 0.97000 * 119.99991 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.19624 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3245 7 1 5.8043 0.2822 -0.3294 8 6 5.9902 1.6654 -1.9704 9 6 5.6898 -0.7878 -2.1723 10 7 5.1240 -1.0978 -3.3053 11 7 5.6306 -2.1923 -3.7536 12 6 6.5439 -2.6218 -2.9148 13 6 7.3618 -3.8451 -3.0596 14 6 8.3065 -4.1755 -2.0817 15 6 9.0723 -5.3207 -2.2079 16 6 8.9207 -6.1436 -3.3022 17 6 7.9790 -5.8244 -4.2987 18 6 7.8206 -6.6675 -5.4232 19 1 8.6365 -7.2977 -5.7449 20 6 6.6067 -6.6849 -6.1190 21 7 5.5254 -6.2052 -5.5602 22 14 6.5301 -7.3932 -7.8459 23 1 7.8790 -7.8676 -8.2466 24 1 5.5773 -8.5318 -7.8721 25 1 6.0730 -6.3434 -8.7916 26 6 7.1969 -4.6644 -4.1699 27 8 6.6023 -1.7364 -1.9001 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5684 0.8410 34 1 3.9785 2.1767 0.0890 35 1 5.7669 2.5385 -1.3571 36 1 7.0703 1.5428 -2.0490 37 1 5.5670 1.8026 -2.9655 38 1 8.4359 -3.5351 -1.2217 39 1 9.7962 -5.5690 -1.4459 40 1 9.5248 -7.0339 -3.3957 41 1 4.6840 -6.2169 -6.0427 42 1 6.4718 -4.4109 -4.9292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328476995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:42 Heat of formation + Delta-G solvation = -58.137291 kcal Electronic energy + Delta-G solvation = -25623.668541 eV Core-core repulsion = 21762.968793 eV Total energy + Delta-G solvation = -3860.699748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.21435 -39.82548 -39.47344 -38.45463 -37.26929 -35.71406 -34.31111 -32.74262 -31.59653 -30.74821 -29.89427 -27.36032 -27.22418 -25.84055 -25.20499 -23.59701 -23.10808 -22.35659 -22.18911 -19.51580 -18.59855 -18.26405 -18.15583 -17.57888 -17.38698 -16.95582 -16.54563 -16.48742 -16.14767 -15.93691 -15.59001 -15.18787 -14.65344 -14.27391 -14.11362 -13.90901 -13.68827 -13.51537 -13.33423 -13.13882 -13.13355 -12.92909 -12.84556 -12.75351 -12.63597 -12.38680 -12.20852 -12.09046 -11.93585 -11.64963 -11.54256 -11.30498 -10.98261 -10.82110 -10.64116 -9.48599 -9.30999 -8.68355 -6.41175 -0.37868 0.76303 0.92778 0.99370 1.38688 1.43458 1.55074 1.60713 2.19278 2.53191 2.68773 2.81232 2.87033 3.43911 3.60217 3.62495 3.83624 4.08252 4.11830 4.23016 4.28211 4.38995 4.40270 4.42719 4.46951 4.53030 4.53485 4.54338 4.66510 4.78450 4.80775 4.82973 4.86730 5.04135 5.14581 5.16280 5.27918 5.42420 5.77692 5.90301 5.98953 6.00179 6.20865 6.25807 6.51475 6.84186 6.86888 7.23065 8.28069 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002930 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.101317 B = 9554.297258 C =10503.458253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.424 6.424 3 C 0.056 3.944 4 C 0.052 3.948 5 O -0.387 6.387 6 C 0.194 3.806 7 H 0.123 0.877 8 C -0.161 4.161 9 C 0.144 3.856 10 N -0.293 5.293 11 N -0.324 5.324 12 C 0.235 3.765 13 C -0.038 4.038 14 C -0.205 4.205 15 C -0.086 4.086 16 C -0.209 4.209 17 C 0.073 3.927 18 C -0.488 4.488 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.822 5.822 22 Si 0.983 3.017 23 H -0.249 1.249 24 H -0.265 1.265 25 H -0.271 1.271 26 C -0.129 4.129 27 O -0.219 6.219 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.288 0.712 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 16.246 12.513 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.344 6.344 3 C -0.020 4.020 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.134 3.866 7 H 0.141 0.859 8 C -0.218 4.218 9 C -0.068 4.068 10 N -0.139 5.139 11 N -0.170 5.170 12 C 0.028 3.972 13 C -0.040 4.040 14 C -0.226 4.226 15 C -0.104 4.104 16 C -0.229 4.229 17 C 0.071 3.929 18 C -0.517 4.517 19 H 0.108 0.892 20 C -0.185 4.185 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.172 1.172 24 H -0.190 1.190 25 H -0.196 1.196 26 C -0.150 4.150 27 O -0.099 6.099 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.099 0.901 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.417 16.155 11.302 20.205 hybrid contribution 0.082 -0.379 0.141 0.412 sum -4.335 15.776 11.443 19.966 Atomic orbital electron populations 1.22873 0.79701 1.03284 1.01047 1.87952 1.21415 1.29348 1.95640 1.22811 0.91939 0.84802 1.02476 1.23071 0.94115 0.99604 0.85542 1.88090 1.19604 1.82621 1.40322 1.20363 0.83933 0.85332 0.96935 0.85903 1.22283 1.01439 0.95626 1.02476 1.28595 0.88467 0.93888 0.95843 1.74249 1.22125 1.07905 1.09645 1.74834 1.10056 1.06523 1.25594 1.26181 0.95973 0.92350 0.82676 1.17413 0.97999 0.89236 0.99393 1.20732 1.00596 1.01324 0.99958 1.20877 0.98482 0.93415 0.97610 1.21482 1.04381 1.01590 0.95479 1.17891 0.91203 0.90806 0.93033 1.19897 0.99311 1.21830 1.10627 0.89164 1.26865 0.94244 0.93974 1.03406 1.69873 1.00743 1.35446 1.38648 0.85140 0.79929 0.78372 0.76224 1.17203 1.19003 1.19648 1.21375 1.02444 0.94289 0.96877 1.84781 1.50916 1.29955 1.44254 0.93635 0.89956 0.91834 0.88248 0.92352 0.91630 0.87085 0.86555 0.90195 0.92410 0.85791 0.83841 0.86353 0.90144 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -10.45 10.67 -144.34 -1.54 -11.99 16 3 C 0.06 0.91 6.32 71.98 0.45 1.36 16 4 C 0.05 0.82 6.13 71.98 0.44 1.27 16 5 O -0.39 -10.18 9.94 -144.34 -1.43 -11.62 16 6 C 0.19 4.68 3.27 29.85 0.10 4.78 16 7 H 0.12 2.11 7.79 -2.39 -0.02 2.09 16 8 C -0.16 -2.84 9.51 71.98 0.68 -2.15 16 9 C 0.14 5.39 7.36 88.32 0.65 6.04 16 10 N -0.29 -13.41 12.22 -165.33 -2.02 -15.43 16 11 N -0.32 -16.68 11.90 -166.30 -1.98 -18.66 16 12 C 0.24 11.38 7.99 87.33 0.70 12.08 16 13 C -0.04 -1.91 5.87 -20.14 -0.12 -2.03 16 14 C -0.21 -8.83 9.73 22.70 0.22 -8.60 16 15 C -0.09 -3.48 10.01 22.18 0.22 -3.26 16 16 C -0.21 -9.61 9.78 22.77 0.22 -9.39 16 17 C 0.07 3.91 5.57 -21.32 -0.12 3.79 16 18 C -0.49 -25.88 9.05 23.47 0.21 -25.66 16 19 H 0.09 4.48 7.90 -2.91 -0.02 4.45 16 20 C 0.03 1.58 5.14 85.25 0.44 2.02 16 21 N -0.82 -45.37 10.97 21.82 0.24 -45.13 16 22 Si 0.98 39.11 29.59 68.60 2.03 41.14 16 23 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 C -0.13 -7.12 8.33 22.99 0.19 -6.93 16 27 O -0.22 -8.92 10.66 -8.45 -0.09 -9.01 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.11 0.81 7.87 -2.39 -0.02 0.80 16 35 H 0.12 1.09 7.87 -2.39 -0.02 1.07 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.12 4.59 7.92 -2.91 -0.02 4.57 16 39 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 41 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 42 H 0.11 6.65 5.98 -2.91 -0.02 6.63 16 Total: -1.00 -74.45 367.14 1.78 -72.67 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 1.03 Total: 23.00 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.54 Total: -24.97 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -3.76 Total: -79.22 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -3.06 Total: -32.61 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -74.45 1.78 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328476995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.533 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds