Wall clock time and date at job start Tue Mar 31 2020 13:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46694 * 2 1 4 4 C 1.34521 * 126.69512 * 89.97419 * 3 2 1 5 5 O 1.21540 * 123.76736 * 0.03655 * 4 3 2 6 6 N 1.33791 * 112.46133 * 180.02562 * 4 3 2 7 7 C 1.40260 * 124.17712 * 179.97438 * 6 4 3 8 8 C 1.38882 * 119.99335 * 186.33600 * 7 6 4 9 9 C 1.38008 * 119.99730 * 180.25519 * 8 7 6 10 10 C 1.38902 * 119.99880 * 359.52212 * 9 8 7 11 11 O 1.35774 * 120.00336 * 180.22896 * 10 9 8 12 12 C 1.34821 * 116.99973 * 354.55247 * 11 10 9 13 13 H 1.08000 * 119.99726 * 5.04513 * 12 11 10 14 14 C 1.38633 * 119.99864 * 185.04638 * 12 11 10 15 15 N 1.31572 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47542 * 89.99795 * 16 14 12 18 18 H 1.48498 * 109.47015 * 209.99860 * 16 14 12 19 19 H 1.48508 * 109.47218 * 329.99468 * 16 14 12 20 20 C 1.38908 * 119.99396 * 0.24880 * 10 9 8 21 21 C 1.38003 * 119.99620 * 0.02562 * 20 10 9 22 22 C 1.34768 * 111.64071 * 0.23354 * 6 4 3 23 23 O 1.21245 * 127.15274 * 179.72878 * 22 6 4 24 24 C 1.47312 * 126.68764 * 270.01592 * 3 2 1 25 25 C 1.53008 * 110.59750 * 298.49329 * 24 3 2 26 26 C 1.52995 * 110.60142 * 61.28390 * 24 3 2 27 27 H 1.08994 * 109.47561 * 300.00087 * 1 2 3 28 28 H 1.09000 * 109.47182 * 60.00436 * 1 2 3 29 29 H 1.09004 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47561 * 239.99913 * 2 1 3 31 31 H 1.09000 * 109.47182 * 119.99563 * 2 1 3 32 32 H 1.07992 * 119.99931 * 0.02777 * 8 7 6 33 33 H 1.07999 * 119.99884 * 179.79136 * 9 8 7 34 34 H 0.97005 * 119.99596 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99834 * 180.02562 * 20 10 9 36 36 H 1.07998 * 119.99899 * 179.97438 * 21 20 10 37 37 H 1.08991 * 109.47045 * 60.00375 * 25 24 3 38 38 H 1.09000 * 109.46892 * 180.02562 * 25 24 3 39 39 H 1.09001 * 109.46722 * 299.99830 * 25 24 3 40 40 H 1.08998 * 109.47118 * 60.00165 * 26 24 3 41 41 H 1.09002 * 109.47731 * 180.02562 * 26 24 3 42 42 H 1.09000 * 109.47357 * 299.99786 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2856 2.1393 1.0786 5 8 2.1503 1.7561 2.2240 6 7 2.7174 3.3622 0.7497 7 6 3.0660 4.3516 1.6807 8 6 3.3781 5.6337 1.2473 9 6 3.7262 6.6059 2.1629 10 6 3.7549 6.3047 3.5185 11 8 4.0928 7.2624 4.4197 12 6 4.4982 8.4503 3.9276 13 1 4.4652 8.6336 2.8637 14 6 4.9573 9.4364 4.7870 15 7 4.9970 9.2132 6.0831 16 14 5.5182 11.0825 4.1052 17 1 4.3640 12.0152 4.0509 18 1 6.5718 11.6495 4.9847 19 1 6.0650 10.8915 2.7377 20 6 3.4381 5.0237 3.9522 21 6 3.0956 4.0501 3.0360 22 6 2.7707 3.5276 -0.5868 23 8 3.1157 4.5222 -1.1883 24 6 2.3112 2.2112 -1.1813 25 6 3.4224 1.5784 -2.0215 26 6 1.0501 2.4129 -2.0237 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3518 5.8688 0.1936 33 1 3.9721 7.6019 1.8256 34 1 5.3187 9.9031 6.6844 35 1 3.4600 4.7896 5.0063 36 1 2.8497 3.0540 3.3731 37 1 3.1078 0.5893 -2.3541 38 1 3.6244 2.2066 -2.8891 39 1 4.3267 1.4889 -1.4197 40 1 0.2878 2.9096 -1.4236 41 1 1.2874 3.0280 -2.8918 42 1 0.6767 1.4444 -2.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332912215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:34 Heat of formation + Delta-G solvation = -25.281932 kcal Electronic energy + Delta-G solvation = -26903.733009 eV Core-core repulsion = 23044.457976 eV Total energy + Delta-G solvation = -3859.275032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82056 -39.06747 -38.76577 -37.49870 -36.27664 -35.07559 -33.19275 -32.28164 -30.71717 -30.23081 -28.30104 -27.89474 -25.52183 -24.56142 -24.11676 -22.31529 -21.77583 -20.49585 -20.28094 -18.08413 -17.66159 -17.03633 -16.90802 -16.35703 -16.00008 -15.65240 -14.83112 -14.60633 -14.40389 -14.31751 -14.17857 -13.97516 -13.65506 -13.56953 -13.16934 -12.98733 -12.88107 -12.79945 -12.68825 -12.44807 -12.23733 -11.94772 -11.88488 -11.77184 -11.68724 -11.35634 -11.07533 -10.99739 -10.49097 -10.22205 -10.08167 -9.81229 -9.27840 -9.21953 -8.78067 -8.25262 -7.05362 -6.47140 -4.04872 1.51059 2.00917 2.07358 2.17892 2.80369 3.09782 3.13977 3.18720 3.22571 3.74523 3.95977 4.18657 4.39478 4.54335 4.56181 4.87209 4.96242 5.05117 5.07784 5.09893 5.11703 5.24828 5.28826 5.32396 5.37471 5.49009 5.59631 5.62344 5.69652 5.73233 5.83252 5.88804 6.16819 6.26888 6.34903 6.68933 6.83667 6.88703 7.03568 7.19575 7.36019 7.40043 7.45413 7.74061 7.97539 8.12989 8.98101 9.66605 10.70415 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026197 B = 0.003073 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.570515 B = 9108.391674 C = 9886.982215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.148 3.852 3 N -0.620 5.620 4 C 0.700 3.300 5 O -0.531 6.531 6 N -0.500 5.500 7 C 0.015 3.985 8 C -0.081 4.081 9 C -0.220 4.220 10 C 0.152 3.848 11 O -0.172 6.172 12 C -0.392 4.392 13 H 0.094 0.906 14 C 0.040 3.960 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.266 1.266 20 C -0.178 4.178 21 C -0.082 4.082 22 C 0.522 3.478 23 O -0.459 6.459 24 C 0.118 3.882 25 C -0.144 4.144 26 C -0.144 4.144 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.271 0.729 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 -17.596 -17.227 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 N -0.359 5.359 4 C 0.403 3.597 5 O -0.404 6.404 6 N -0.236 5.236 7 C -0.074 4.074 8 C -0.101 4.101 9 C -0.240 4.240 10 C 0.097 3.903 11 O -0.074 6.074 12 C -0.469 4.469 13 H 0.111 0.889 14 C -0.165 4.165 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.198 4.198 21 C -0.101 4.101 22 C 0.309 3.691 23 O -0.329 6.329 24 C 0.029 3.971 25 C -0.202 4.202 26 C -0.202 4.202 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.686 -17.220 -16.416 24.713 hybrid contribution 0.246 0.895 -0.339 0.988 sum -6.440 -16.325 -16.755 24.264 Atomic orbital electron populations 1.22310 0.95494 1.02602 1.03052 1.21265 0.94299 0.78034 1.03662 1.47888 1.69278 1.14122 1.04652 1.15857 0.78210 0.80298 0.85369 1.90842 1.57061 1.74212 1.18326 1.43517 1.58497 1.13367 1.08198 1.17322 1.14357 0.87720 0.87998 1.21017 0.97989 0.90363 1.00704 1.21026 1.10014 1.00458 0.92503 1.19514 0.92365 0.89393 0.88999 1.83986 1.71293 1.20458 1.31711 1.21367 1.43324 0.88103 0.94062 0.88902 1.25310 0.96513 0.99535 0.95116 1.70051 1.42864 1.34413 1.02099 0.85695 0.78651 0.80211 0.78808 1.19820 1.20214 1.19088 1.20134 1.09174 0.90791 0.99706 1.21193 0.98046 1.00704 0.90159 1.20734 0.77141 0.89358 0.81830 1.90704 1.44061 1.31899 1.66194 1.21507 0.98440 0.88685 0.88428 1.21951 0.96638 1.01679 0.99901 1.22022 0.94790 1.03610 0.99818 0.91823 0.92051 0.91077 0.89717 0.89204 0.84513 0.84754 0.91928 0.85683 0.83142 0.90403 0.89731 0.91378 0.91429 0.89833 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 10.11 37.16 0.38 -0.75 16 2 C 0.15 1.05 6.56 -4.04 -0.03 1.02 16 3 N -0.62 -6.54 2.47 -165.09 -0.41 -6.95 16 4 C 0.70 10.69 8.23 -88.03 -0.72 9.97 16 5 O -0.53 -9.42 14.33 5.33 0.08 -9.35 16 6 N -0.50 -8.35 2.83 -64.31 -0.18 -8.53 16 7 C 0.02 0.31 6.56 -83.52 -0.55 -0.24 16 8 C -0.08 -1.67 9.31 -39.43 -0.37 -2.04 16 9 C -0.22 -5.02 9.16 -39.42 -0.36 -5.38 16 10 C 0.15 3.78 6.65 -39.09 -0.26 3.52 16 11 O -0.17 -4.95 9.76 0.00 0.00 -4.95 16 12 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 13 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 14 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 15 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 16 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.18 -3.99 9.99 -39.42 -0.39 -4.39 16 21 C -0.08 -1.68 9.25 -39.43 -0.36 -2.05 16 22 C 0.52 7.55 6.86 -10.56 -0.07 7.48 16 23 O -0.46 -7.51 15.06 5.59 0.08 -7.43 16 24 C 0.12 1.15 1.14 -132.09 -0.15 1.00 16 25 C -0.14 -1.02 8.80 37.16 0.33 -0.69 16 26 C -0.14 -1.04 8.04 37.16 0.30 -0.74 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.35 6.28 -51.93 -0.33 0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.36 7.36 -51.93 -0.38 -0.03 16 31 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 32 H 0.14 2.68 5.36 -52.49 -0.28 2.40 16 33 H 0.13 3.01 5.63 -52.49 -0.30 2.72 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.15 3.00 5.18 -52.49 -0.27 2.73 16 37 H 0.08 0.35 7.43 -51.93 -0.39 -0.03 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.38 7.02 -51.93 -0.36 0.01 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -33.46 347.31 -6.62 -40.08 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.09 Total: 3.86 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.07 Total: -3.03 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.17 Total: -40.01 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.16 Total: -21.73 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.46 -6.62 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332912215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.797 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds