Wall clock time and date at job start Tue Mar 31 2020 13:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46694 * 2 1 4 4 C 1.34521 * 126.69512 * 89.97419 * 3 2 1 5 5 O 1.21540 * 123.76736 * 0.03655 * 4 3 2 6 6 N 1.33791 * 112.46133 * 180.02562 * 4 3 2 7 7 C 1.40260 * 124.17712 * 179.97438 * 6 4 3 8 8 C 1.38882 * 119.99335 * 186.33600 * 7 6 4 9 9 C 1.38008 * 119.99730 * 180.25519 * 8 7 6 10 10 C 1.38902 * 119.99880 * 359.52212 * 9 8 7 11 11 O 1.35774 * 120.00336 * 180.22896 * 10 9 8 12 12 C 1.34821 * 116.99973 * 354.55247 * 11 10 9 13 13 H 1.08000 * 119.99726 * 5.04513 * 12 11 10 14 14 C 1.38633 * 119.99864 * 185.04638 * 12 11 10 15 15 N 1.31572 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47542 * 89.99795 * 16 14 12 18 18 H 1.48498 * 109.47015 * 209.99860 * 16 14 12 19 19 H 1.48508 * 109.47218 * 329.99468 * 16 14 12 20 20 C 1.38908 * 119.99396 * 0.24880 * 10 9 8 21 21 C 1.38003 * 119.99620 * 0.02562 * 20 10 9 22 22 C 1.34768 * 111.64071 * 0.23354 * 6 4 3 23 23 O 1.21245 * 127.15274 * 179.72878 * 22 6 4 24 24 C 1.47312 * 126.68764 * 270.01592 * 3 2 1 25 25 C 1.53008 * 110.59750 * 298.49329 * 24 3 2 26 26 C 1.52995 * 110.60142 * 61.28390 * 24 3 2 27 27 H 1.08994 * 109.47561 * 300.00087 * 1 2 3 28 28 H 1.09000 * 109.47182 * 60.00436 * 1 2 3 29 29 H 1.09004 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47561 * 239.99913 * 2 1 3 31 31 H 1.09000 * 109.47182 * 119.99563 * 2 1 3 32 32 H 1.07992 * 119.99931 * 0.02777 * 8 7 6 33 33 H 1.07999 * 119.99884 * 179.79136 * 9 8 7 34 34 H 0.97005 * 119.99596 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99834 * 180.02562 * 20 10 9 36 36 H 1.07998 * 119.99899 * 179.97438 * 21 20 10 37 37 H 1.08991 * 109.47045 * 60.00375 * 25 24 3 38 38 H 1.09000 * 109.46892 * 180.02562 * 25 24 3 39 39 H 1.09001 * 109.46722 * 299.99830 * 25 24 3 40 40 H 1.08998 * 109.47118 * 60.00165 * 26 24 3 41 41 H 1.09002 * 109.47731 * 180.02562 * 26 24 3 42 42 H 1.09000 * 109.47357 * 299.99786 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2856 2.1393 1.0786 5 8 2.1503 1.7561 2.2240 6 7 2.7174 3.3622 0.7497 7 6 3.0660 4.3516 1.6807 8 6 3.3781 5.6337 1.2473 9 6 3.7262 6.6059 2.1629 10 6 3.7549 6.3047 3.5185 11 8 4.0928 7.2624 4.4197 12 6 4.4982 8.4503 3.9276 13 1 4.4652 8.6336 2.8637 14 6 4.9573 9.4364 4.7870 15 7 4.9970 9.2132 6.0831 16 14 5.5182 11.0825 4.1052 17 1 4.3640 12.0152 4.0509 18 1 6.5718 11.6495 4.9847 19 1 6.0650 10.8915 2.7377 20 6 3.4381 5.0237 3.9522 21 6 3.0956 4.0501 3.0360 22 6 2.7707 3.5276 -0.5868 23 8 3.1157 4.5222 -1.1883 24 6 2.3112 2.2112 -1.1813 25 6 3.4224 1.5784 -2.0215 26 6 1.0501 2.4129 -2.0237 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3518 5.8688 0.1936 33 1 3.9721 7.6019 1.8256 34 1 5.3187 9.9031 6.6844 35 1 3.4600 4.7896 5.0063 36 1 2.8497 3.0540 3.3731 37 1 3.1078 0.5893 -2.3541 38 1 3.6244 2.2066 -2.8891 39 1 4.3267 1.4889 -1.4197 40 1 0.2878 2.9096 -1.4236 41 1 1.2874 3.0280 -2.8918 42 1 0.6767 1.4444 -2.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332912215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:33 Heat of formation + Delta-G solvation = -46.190322 kcal Electronic energy + Delta-G solvation = -26904.639664 eV Core-core repulsion = 23044.457976 eV Total energy + Delta-G solvation = -3860.181688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.97561 -40.85842 -39.98780 -38.91330 -37.67645 -36.42357 -34.32840 -33.88196 -32.01510 -31.72731 -29.71735 -28.49048 -27.47683 -25.76975 -25.15862 -23.82657 -23.11357 -21.66252 -21.51293 -19.93964 -19.14769 -18.69130 -18.10101 -17.60351 -17.18685 -16.58936 -16.41441 -16.12646 -15.79418 -15.64200 -15.51110 -15.32322 -14.78045 -14.74620 -14.69409 -14.40758 -13.86241 -13.73665 -13.61332 -13.49807 -13.43994 -13.30352 -13.11627 -12.76934 -12.76071 -12.67082 -12.46297 -12.14657 -11.94878 -11.67688 -11.49847 -11.46723 -10.81706 -10.76037 -10.14211 -10.02622 -8.86329 -8.50849 -6.18924 0.21531 0.36949 0.52596 0.91459 1.35116 1.43327 1.52910 1.82182 1.88824 2.15785 2.72955 2.75504 3.07310 3.38495 3.44179 3.72823 3.82345 3.95752 4.00335 4.08192 4.29885 4.32994 4.36252 4.47637 4.55171 4.58448 4.66816 4.71958 4.80356 4.85207 4.95168 4.96855 5.07292 5.10756 5.14366 5.18769 5.31119 5.38449 5.40666 5.49596 5.54205 5.91223 5.96054 6.07696 6.25196 6.91181 6.93240 7.68454 8.71638 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026197 B = 0.003073 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.570515 B = 9108.391674 C = 9886.982215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.139 3.861 3 N -0.600 5.600 4 C 0.689 3.311 5 O -0.564 6.564 6 N -0.516 5.516 7 C 0.038 3.962 8 C -0.083 4.083 9 C -0.219 4.219 10 C 0.120 3.880 11 O -0.220 6.220 12 C -0.418 4.418 13 H 0.104 0.896 14 C -0.019 4.019 15 N -0.916 5.916 16 Si 1.020 2.980 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.253 1.253 20 C -0.180 4.180 21 C -0.081 4.081 22 C 0.512 3.488 23 O -0.481 6.481 24 C 0.129 3.871 25 C -0.141 4.141 26 C -0.142 4.142 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.275 0.725 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -19.802 -21.312 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 N -0.339 5.339 4 C 0.392 3.608 5 O -0.441 6.441 6 N -0.253 5.253 7 C -0.053 4.053 8 C -0.102 4.102 9 C -0.238 4.238 10 C 0.068 3.932 11 O -0.126 6.126 12 C -0.494 4.494 13 H 0.121 0.879 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.839 3.161 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.176 1.176 20 C -0.199 4.199 21 C -0.101 4.101 22 C 0.302 3.698 23 O -0.352 6.352 24 C 0.041 3.959 25 C -0.198 4.198 26 C -0.199 4.199 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.169 0.831 33 H 0.152 0.848 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.179 0.821 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.455 -19.514 -20.590 29.332 hybrid contribution 0.344 1.232 0.725 1.470 sum -7.111 -18.282 -19.866 27.918 Atomic orbital electron populations 1.22285 0.94744 1.03880 1.02107 1.21710 0.94881 0.75941 1.05464 1.48143 1.67568 1.14809 1.03369 1.16111 0.78353 0.80183 0.86112 1.90805 1.58671 1.74644 1.19931 1.43766 1.59256 1.13485 1.08757 1.17478 1.10824 0.88351 0.88613 1.21133 0.97867 0.90278 1.00954 1.21105 1.09625 1.01038 0.92056 1.19898 0.93750 0.89791 0.89720 1.83963 1.73878 1.21469 1.33260 1.21878 1.44080 0.88525 0.94924 0.87858 1.26618 0.96154 1.03639 0.95313 1.70191 1.45147 1.36212 1.03811 0.84572 0.78458 0.74530 0.78568 1.18672 1.19432 1.17625 1.20323 1.08699 0.90468 1.00459 1.21324 0.97741 1.00609 0.90401 1.21769 0.76057 0.91030 0.80952 1.90679 1.44856 1.33355 1.66275 1.21750 1.00644 0.85490 0.88065 1.22045 0.94861 1.03662 0.99268 1.22106 0.92759 1.05810 0.99245 0.94965 0.90761 0.88718 0.85267 0.90067 0.83092 0.84784 0.91627 0.85408 0.82145 0.86512 0.88720 0.92742 0.92884 0.88730 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.11 71.98 0.73 -0.84 16 2 C 0.14 1.40 6.56 86.38 0.57 1.97 16 3 N -0.60 -10.85 2.47 -794.66 -1.96 -12.81 16 4 C 0.69 20.24 8.23 179.44 1.48 21.71 16 5 O -0.56 -19.87 14.33 -3.84 -0.06 -19.93 16 6 N -0.52 -16.77 2.83 -594.61 -1.68 -18.45 16 7 C 0.04 1.52 6.56 38.10 0.25 1.77 16 8 C -0.08 -3.44 9.31 22.37 0.21 -3.23 16 9 C -0.22 -10.28 9.16 22.37 0.20 -10.08 16 10 C 0.12 6.29 6.65 22.59 0.15 6.44 16 11 O -0.22 -13.49 9.76 -22.92 -0.22 -13.71 16 12 C -0.42 -24.66 9.48 67.91 0.64 -24.02 16 13 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 14 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 15 N -0.92 -56.51 13.67 21.61 0.30 -56.21 16 16 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 C -0.18 -8.43 9.99 22.37 0.22 -8.20 16 21 C -0.08 -3.42 9.25 22.37 0.21 -3.21 16 22 C 0.51 13.88 6.86 87.94 0.60 14.48 16 23 O -0.48 -15.01 15.06 -2.92 -0.04 -15.05 16 24 C 0.13 2.02 1.14 2.98 0.00 2.03 16 25 C -0.14 -1.34 8.80 71.98 0.63 -0.70 16 26 C -0.14 -1.40 8.04 71.98 0.58 -0.82 16 27 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.49 6.28 -2.39 -0.01 0.48 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.13 0.24 7.36 -2.39 -0.02 0.23 16 31 H 0.08 1.03 8.03 -2.39 -0.02 1.01 16 32 H 0.15 5.86 5.36 -2.91 -0.02 5.85 16 33 H 0.13 6.22 5.63 -2.91 -0.02 6.21 16 34 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 35 H 0.13 5.78 8.06 -2.91 -0.02 5.76 16 36 H 0.16 6.50 5.18 -2.91 -0.02 6.48 16 37 H 0.12 0.26 7.43 -2.39 -0.02 0.25 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.12 0.36 7.02 -2.39 -0.02 0.34 16 Total: -1.00 -79.24 347.31 6.36 -72.88 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.06 Total: 21.43 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.94 Total: -3.32 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.35 Total: -87.48 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.32 Total: -48.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -79.24 6.36 -72.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332912215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.693 kcal (2) G-P(sol) polarization free energy of solvation -79.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds