Wall clock time and date at job start Tue Mar 31 2020 13:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32988 * 1 3 3 C 1.47104 * 119.99865 * 2 1 4 4 O 1.21609 * 120.00094 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00001 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99896 * 0.02562 * 5 3 2 7 7 C 1.53000 * 109.46985 * 270.00077 * 6 5 3 8 8 C 1.46497 * 120.00073 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.47353 * 90.00110 * 8 5 3 10 10 O 1.21298 * 119.99795 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00151 * 179.97438 * 9 8 5 12 12 C 1.39995 * 119.99768 * 174.78391 * 11 9 8 13 13 C 1.38917 * 119.99483 * 146.32329 * 12 11 9 14 14 C 1.38007 * 119.99559 * 180.02562 * 13 12 11 15 15 C 1.38912 * 120.00071 * 0.02562 * 14 13 12 16 16 O 1.35773 * 119.99664 * 179.97438 * 15 14 13 17 17 C 1.34816 * 117.00330 * 5.91132 * 16 15 14 18 18 H 1.08000 * 119.99533 * 5.41061 * 17 16 15 19 19 C 1.38634 * 120.00170 * 185.40184 * 17 16 15 20 20 N 1.31571 * 119.99807 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47520 * 89.99472 * 21 19 17 23 23 H 1.48504 * 109.46871 * 209.99587 * 21 19 17 24 24 H 1.48506 * 109.47052 * 329.99333 * 21 19 17 25 25 C 1.38908 * 120.00298 * 0.25550 * 15 14 13 26 26 C 1.38010 * 119.99898 * 359.45374 * 25 15 14 27 27 H 1.08005 * 120.00025 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.00003 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00318 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46740 * 30.00223 * 6 5 3 31 31 H 1.09001 * 109.46802 * 150.00157 * 6 5 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46998 * 299.99684 * 7 6 5 34 34 H 1.09001 * 109.47285 * 60.00375 * 7 6 5 35 35 H 1.09005 * 109.47200 * 330.00022 * 8 5 3 36 36 H 1.08999 * 109.47232 * 210.00057 * 8 5 3 37 37 H 0.96999 * 119.99772 * 354.79196 * 11 9 8 38 38 H 1.08001 * 120.00741 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.99888 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99827 * 180.02562 * 20 19 17 41 41 H 1.07991 * 119.99685 * 179.70182 * 25 15 14 42 42 H 1.07994 * 119.99984 * 180.27218 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3271 0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1457 0.0052 -0.0017 7 6 4.4012 -0.4374 1.4405 8 6 4.1457 2.5427 0.0000 9 6 4.3974 2.9768 1.4211 10 8 4.0033 2.2938 2.3427 11 7 5.0605 4.1240 1.6678 12 6 5.1994 4.5831 2.9830 13 6 6.3494 5.2632 3.3634 14 6 6.4865 5.7154 4.6600 15 6 5.4748 5.4900 5.5849 16 8 5.6101 5.9344 6.8607 17 6 6.6915 6.6917 7.1337 18 1 7.3555 6.9920 6.3366 19 6 6.9512 7.0850 8.4375 20 7 8.0069 7.8236 8.7039 21 14 5.8029 6.5651 9.8161 22 1 6.2600 5.2693 10.3790 23 1 5.8104 7.5984 10.8826 24 1 4.4252 6.4145 9.2825 25 6 4.3274 4.8048 5.2061 26 6 4.1876 4.3578 3.9079 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8699 -0.9353 -0.0004 30 1 3.5564 -0.7540 -0.5158 31 1 5.0979 0.1360 -0.5158 32 1 4.9466 -1.3811 1.4396 33 1 4.9906 0.3219 1.9546 34 1 3.4490 -0.5681 1.9546 35 1 3.5564 3.3028 -0.5131 36 1 5.0979 2.4128 -0.5142 37 1 5.4414 4.6314 0.9341 38 1 7.1365 5.4374 2.6447 39 1 7.3808 6.2438 4.9559 40 1 8.1888 8.0985 9.6162 41 1 3.5431 4.6254 5.9264 42 1 3.2936 3.8290 3.6122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333085692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:44 Heat of formation + Delta-G solvation = -32.892797 kcal Electronic energy + Delta-G solvation = -25865.441400 eV Core-core repulsion = 22005.836335 eV Total energy + Delta-G solvation = -3859.605064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70576 -39.67250 -38.69444 -36.77564 -35.97375 -34.02931 -33.31360 -32.32968 -31.20652 -30.30168 -29.06484 -27.38087 -25.20467 -24.07011 -22.91626 -22.34656 -21.41537 -20.18777 -18.88633 -18.03561 -17.95167 -17.60772 -17.28398 -16.69864 -16.06910 -15.27034 -15.10340 -14.72094 -14.39018 -14.18851 -13.91964 -13.86555 -13.74663 -13.61433 -13.50132 -13.05721 -12.80657 -12.50687 -12.36564 -12.29468 -12.12155 -11.87076 -11.75141 -11.63815 -11.22190 -10.92940 -10.74811 -10.17349 -10.15935 -10.09003 -10.00680 -9.66889 -9.33657 -8.91984 -8.76574 -8.28660 -7.04240 -6.41489 -4.06999 1.12087 1.97966 2.11553 2.51862 2.80591 3.06594 3.23605 3.27556 3.39674 3.43055 4.23527 4.25122 4.47874 4.55036 4.68945 4.77039 4.81996 4.91157 4.99793 5.09337 5.10956 5.12883 5.29223 5.47662 5.49737 5.66688 5.71555 5.90670 5.95834 6.05663 6.11230 6.11688 6.22482 6.25130 6.68102 6.75338 6.92845 7.05629 7.09079 7.23433 7.58446 7.63237 7.78496 7.92242 8.02714 8.31504 8.94107 9.57039 10.66156 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002547 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.710139 B =10989.691710 C =11381.478508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.213 4.213 3 C 0.551 3.449 4 O -0.540 6.540 5 N -0.593 5.593 6 C 0.108 3.892 7 C -0.172 4.172 8 C 0.098 3.902 9 C 0.488 3.512 10 O -0.511 6.511 11 N -0.662 5.662 12 C 0.048 3.952 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.152 3.848 16 O -0.217 6.217 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.176 4.176 26 C -0.069 4.069 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.402 0.598 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.279 0.721 41 H 0.120 0.880 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -15.804 -21.380 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.233 4.233 3 C 0.342 3.658 4 O -0.419 6.419 5 N -0.325 5.325 6 C -0.015 4.015 7 C -0.230 4.230 8 C -0.029 4.029 9 C 0.273 3.727 10 O -0.386 6.386 11 N -0.307 5.307 12 C -0.044 4.044 13 C -0.113 4.113 14 C -0.226 4.226 15 C 0.099 3.901 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.196 4.196 26 C -0.089 4.089 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.237 0.763 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.099 -15.678 -20.373 26.953 hybrid contribution 0.209 0.103 0.354 0.424 sum -7.891 -15.575 -20.019 26.563 Atomic orbital electron populations 1.24765 0.95374 1.03345 0.89780 1.22818 0.96320 0.96986 1.07210 1.18681 0.81595 0.90033 0.75458 1.90794 1.67801 1.33415 1.49844 1.47437 1.05598 1.06104 1.73320 1.21694 0.96852 0.84688 0.98263 1.22247 1.03034 1.01542 0.96152 1.21285 0.98865 0.88292 0.94462 1.21176 0.78577 0.80761 0.92153 1.90714 1.49303 1.52839 1.45732 1.43241 1.56131 1.23771 1.07602 1.17280 0.96325 1.06213 0.84632 1.20523 0.94951 0.99752 0.96060 1.21098 1.01199 1.07265 0.92992 1.19150 0.93353 0.92527 0.85025 1.83598 1.44504 1.60741 1.23322 1.20750 1.02309 1.27291 0.96049 0.87672 1.24464 0.96394 0.95708 0.97463 1.69653 1.25603 1.34939 1.21603 0.86180 0.81948 0.78391 0.80416 1.19903 1.20784 1.18286 1.20119 0.97834 1.05366 0.96314 1.20602 0.97505 0.98618 0.92135 0.86800 0.86659 0.85316 0.89955 0.90291 0.92130 0.90918 0.92147 0.86768 0.87479 0.76327 0.86869 0.84492 0.91066 0.86194 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 14.31 28.91 0.41 -0.29 16 2 C -0.21 -1.83 9.21 -37.81 -0.35 -2.18 16 3 C 0.55 6.61 7.62 -12.66 -0.10 6.52 16 4 O -0.54 -8.50 15.80 5.27 0.08 -8.41 16 5 N -0.59 -5.86 2.02 -176.45 -0.36 -6.22 16 6 C 0.11 0.74 5.89 -4.04 -0.02 0.72 16 7 C -0.17 -1.55 9.50 37.16 0.35 -1.20 16 8 C 0.10 0.91 5.93 -5.19 -0.03 0.88 16 9 C 0.49 6.55 7.54 -10.99 -0.08 6.47 16 10 O -0.51 -8.80 11.73 5.54 0.06 -8.74 16 11 N -0.66 -8.63 5.34 -9.82 -0.05 -8.68 16 12 C 0.05 0.83 6.28 -83.63 -0.52 0.31 16 13 C -0.09 -1.64 9.96 -39.41 -0.39 -2.03 16 14 C -0.21 -4.40 9.13 -39.42 -0.36 -4.76 16 15 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 16 O -0.22 -5.80 8.58 0.02 0.00 -5.80 16 17 C -0.39 -10.97 9.90 30.88 0.31 -10.67 16 18 H 0.11 3.00 5.52 -52.49 -0.29 2.71 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.45 13.96 55.48 0.77 -24.68 16 21 Si 0.91 21.95 28.62 -169.99 -4.86 17.08 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.18 -3.75 9.99 -39.42 -0.39 -4.15 16 26 C -0.07 -1.34 8.65 -39.41 -0.34 -1.68 16 27 H 0.11 1.01 7.49 -52.48 -0.39 0.62 16 28 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.13 0.76 6.23 -52.49 -0.33 0.43 16 30 H 0.08 0.39 6.10 -51.93 -0.32 0.07 16 31 H 0.08 0.39 7.89 -51.93 -0.41 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.88 6.39 -51.93 -0.33 0.55 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 36 H 0.11 0.58 7.89 -51.93 -0.41 0.17 16 37 H 0.40 3.65 8.82 -40.82 -0.36 3.29 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 40 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.12 2.45 6.43 -52.49 -0.34 2.11 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -35.43 358.07 -5.94 -41.37 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.11 Total: 5.75 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.88 Total: -7.07 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.36 Total: -39.58 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.15 Total: -22.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.43 -5.94 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333085692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.474 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds