Wall clock time and date at job start Tue Mar 31 2020 13:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32988 * 1 3 3 C 1.47104 * 119.99865 * 2 1 4 4 O 1.21609 * 120.00094 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00001 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99896 * 0.02562 * 5 3 2 7 7 C 1.53000 * 109.46985 * 270.00077 * 6 5 3 8 8 C 1.46497 * 120.00073 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.47353 * 90.00110 * 8 5 3 10 10 O 1.21298 * 119.99795 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00151 * 179.97438 * 9 8 5 12 12 C 1.39995 * 119.99768 * 174.78391 * 11 9 8 13 13 C 1.38917 * 119.99483 * 146.32329 * 12 11 9 14 14 C 1.38007 * 119.99559 * 180.02562 * 13 12 11 15 15 C 1.38912 * 120.00071 * 0.02562 * 14 13 12 16 16 O 1.35773 * 119.99664 * 179.97438 * 15 14 13 17 17 C 1.34816 * 117.00330 * 5.91132 * 16 15 14 18 18 H 1.08000 * 119.99533 * 5.41061 * 17 16 15 19 19 C 1.38634 * 120.00170 * 185.40184 * 17 16 15 20 20 N 1.31571 * 119.99807 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47520 * 89.99472 * 21 19 17 23 23 H 1.48504 * 109.46871 * 209.99587 * 21 19 17 24 24 H 1.48506 * 109.47052 * 329.99333 * 21 19 17 25 25 C 1.38908 * 120.00298 * 0.25550 * 15 14 13 26 26 C 1.38010 * 119.99898 * 359.45374 * 25 15 14 27 27 H 1.08005 * 120.00025 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.00003 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00318 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46740 * 30.00223 * 6 5 3 31 31 H 1.09001 * 109.46802 * 150.00157 * 6 5 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46998 * 299.99684 * 7 6 5 34 34 H 1.09001 * 109.47285 * 60.00375 * 7 6 5 35 35 H 1.09005 * 109.47200 * 330.00022 * 8 5 3 36 36 H 1.08999 * 109.47232 * 210.00057 * 8 5 3 37 37 H 0.96999 * 119.99772 * 354.79196 * 11 9 8 38 38 H 1.08001 * 120.00741 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.99888 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99827 * 180.02562 * 20 19 17 41 41 H 1.07991 * 119.99685 * 179.70182 * 25 15 14 42 42 H 1.07994 * 119.99984 * 180.27218 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3271 0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1457 0.0052 -0.0017 7 6 4.4012 -0.4374 1.4405 8 6 4.1457 2.5427 0.0000 9 6 4.3974 2.9768 1.4211 10 8 4.0033 2.2938 2.3427 11 7 5.0605 4.1240 1.6678 12 6 5.1994 4.5831 2.9830 13 6 6.3494 5.2632 3.3634 14 6 6.4865 5.7154 4.6600 15 6 5.4748 5.4900 5.5849 16 8 5.6101 5.9344 6.8607 17 6 6.6915 6.6917 7.1337 18 1 7.3555 6.9920 6.3366 19 6 6.9512 7.0850 8.4375 20 7 8.0069 7.8236 8.7039 21 14 5.8029 6.5651 9.8161 22 1 6.2600 5.2693 10.3790 23 1 5.8104 7.5984 10.8826 24 1 4.4252 6.4145 9.2825 25 6 4.3274 4.8048 5.2061 26 6 4.1876 4.3578 3.9079 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8699 -0.9353 -0.0004 30 1 3.5564 -0.7540 -0.5158 31 1 5.0979 0.1360 -0.5158 32 1 4.9466 -1.3811 1.4396 33 1 4.9906 0.3219 1.9546 34 1 3.4490 -0.5681 1.9546 35 1 3.5564 3.3028 -0.5131 36 1 5.0979 2.4128 -0.5142 37 1 5.4414 4.6314 0.9341 38 1 7.1365 5.4374 2.6447 39 1 7.3808 6.2438 4.9559 40 1 8.1888 8.0985 9.6162 41 1 3.5431 4.6254 5.9264 42 1 3.2936 3.8290 3.6122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333085692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:43 Heat of formation + Delta-G solvation = -57.236258 kcal Electronic energy + Delta-G solvation = -25866.497011 eV Core-core repulsion = 22005.836335 eV Total energy + Delta-G solvation = -3860.660676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76512 -40.96661 -40.17289 -38.28543 -36.90011 -35.41286 -34.37979 -33.96958 -31.97546 -31.93460 -30.28332 -28.61605 -27.09830 -24.83298 -24.06164 -23.71868 -22.69029 -21.49241 -19.85053 -19.62328 -19.19942 -18.76876 -18.61970 -17.93979 -17.03303 -16.65785 -16.32737 -16.05137 -15.79559 -15.61222 -15.33935 -15.15466 -14.90855 -14.50790 -14.48529 -14.36794 -14.18637 -14.07506 -13.73819 -13.48238 -13.34698 -13.16834 -12.87401 -12.76491 -12.52830 -12.45520 -12.00453 -11.91029 -11.47024 -11.24578 -11.01008 -10.97929 -10.75513 -10.64783 -9.92759 -9.76021 -8.68423 -8.50701 -6.21414 0.41680 0.45151 0.47351 1.30489 1.33388 1.50832 1.64160 1.73451 2.25387 2.27484 2.41951 2.74028 3.07071 3.08448 3.60973 3.72178 4.00753 4.04415 4.06510 4.19528 4.25213 4.34972 4.43066 4.46071 4.54822 4.62939 4.69758 4.75391 4.84992 4.96117 5.04548 5.11361 5.29991 5.33108 5.37430 5.45710 5.48379 5.54042 5.54563 5.73295 5.88678 6.16988 6.31952 6.52249 6.84047 7.09454 7.23359 7.58379 8.60629 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002547 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.710139 B =10989.691710 C =11381.478508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.228 4.228 3 C 0.538 3.462 4 O -0.592 6.592 5 N -0.592 5.592 6 C 0.105 3.895 7 C -0.167 4.167 8 C 0.101 3.899 9 C 0.485 3.515 10 O -0.551 6.551 11 N -0.652 5.652 12 C 0.077 3.923 13 C -0.083 4.083 14 C -0.212 4.212 15 C 0.114 3.886 16 O -0.245 6.245 17 C -0.397 4.397 18 H 0.087 0.913 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.266 1.266 25 C -0.178 4.178 26 C -0.078 4.078 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.118 0.882 36 H 0.157 0.843 37 H 0.426 0.574 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -18.203 -24.370 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.248 4.248 3 C 0.330 3.670 4 O -0.474 6.474 5 N -0.322 5.322 6 C -0.017 4.017 7 C -0.225 4.225 8 C -0.026 4.026 9 C 0.272 3.728 10 O -0.427 6.427 11 N -0.300 5.300 12 C -0.017 4.017 13 C -0.103 4.103 14 C -0.231 4.231 15 C 0.064 3.936 16 O -0.153 6.153 17 C -0.473 4.473 18 H 0.105 0.895 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.190 1.190 24 H -0.191 1.191 25 C -0.197 4.197 26 C -0.098 4.098 27 H 0.111 0.889 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.136 0.864 36 H 0.175 0.825 37 H 0.265 0.735 38 H 0.175 0.825 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.288 -18.107 -23.444 30.760 hybrid contribution 0.189 0.675 0.945 1.177 sum -8.099 -17.433 -22.499 29.592 Atomic orbital electron populations 1.25011 0.95284 1.04061 0.87963 1.22996 0.96705 0.96634 1.08494 1.19371 0.82439 0.90571 0.74591 1.90760 1.68936 1.35276 1.52438 1.47643 1.05301 1.07323 1.71941 1.21972 0.98485 0.84001 0.97200 1.22183 1.01554 1.01620 0.97132 1.21479 1.01212 0.88443 0.91445 1.22077 0.77024 0.79983 0.93679 1.90717 1.50510 1.54044 1.47453 1.43222 1.56223 1.24136 1.06402 1.17397 0.94860 1.03215 0.86188 1.20828 0.95951 0.98314 0.95205 1.21176 1.00263 1.07294 0.94406 1.19553 0.94966 0.94371 0.84696 1.83540 1.44351 1.62302 1.25117 1.20729 1.02587 1.28002 0.96023 0.89541 1.25207 0.97918 0.95937 0.99578 1.69722 1.27274 1.36656 1.22432 0.85291 0.79420 0.78572 0.77908 1.19264 1.19003 1.19091 1.20253 0.97268 1.04909 0.97293 1.20685 0.98278 0.98840 0.91964 0.88942 0.83090 0.82317 0.87220 0.87300 0.89899 0.94298 0.94226 0.86446 0.82513 0.73474 0.82463 0.85880 0.90566 0.85946 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 14.31 66.65 0.95 -0.16 16 2 C -0.23 -3.43 9.21 23.43 0.22 -3.22 16 3 C 0.54 12.11 7.62 86.57 0.66 12.77 16 4 O -0.59 -18.53 15.80 -4.06 -0.06 -18.59 16 5 N -0.59 -10.05 2.02 -830.41 -1.68 -11.73 16 6 C 0.10 1.03 5.89 86.38 0.51 1.54 16 7 C -0.17 -2.63 9.50 71.98 0.68 -1.95 16 8 C 0.10 1.53 5.93 85.63 0.51 2.04 16 9 C 0.48 11.84 7.54 87.66 0.66 12.50 16 10 O -0.55 -18.38 11.73 -3.08 -0.04 -18.42 16 11 N -0.65 -14.92 5.34 -303.37 -1.62 -16.54 16 12 C 0.08 2.53 6.28 38.16 0.24 2.77 16 13 C -0.08 -2.76 9.96 22.38 0.22 -2.54 16 14 C -0.21 -9.16 9.13 22.38 0.20 -8.96 16 15 C 0.11 5.51 6.65 22.59 0.15 5.66 16 16 O -0.25 -13.69 8.58 -22.85 -0.20 -13.89 16 17 C -0.40 -23.48 9.90 67.91 0.67 -22.81 16 18 H 0.09 5.25 5.52 -2.91 -0.02 5.23 16 19 C 0.01 0.71 5.49 84.83 0.47 1.18 16 20 N -0.92 -54.93 13.96 21.61 0.30 -54.62 16 21 Si 0.97 46.39 28.62 68.60 1.96 48.36 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 25 C -0.18 -7.70 9.99 22.38 0.22 -7.47 16 26 C -0.08 -2.98 8.65 22.38 0.19 -2.79 16 27 H 0.09 1.63 7.49 -2.91 -0.02 1.61 16 28 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.16 1.30 6.23 -2.91 -0.02 1.28 16 30 H 0.11 0.52 6.10 -2.39 -0.01 0.51 16 31 H 0.11 0.48 7.89 -2.39 -0.02 0.47 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.88 6.39 -2.39 -0.02 0.87 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 1.83 7.42 -2.38 -0.02 1.81 16 36 H 0.16 0.83 7.89 -2.39 -0.02 0.81 16 37 H 0.43 5.86 8.82 -92.71 -0.82 5.05 16 38 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.12 5.67 5.71 -2.91 -0.02 5.66 16 40 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.12 5.11 8.06 -2.92 -0.02 5.08 16 42 H 0.12 4.84 6.43 -2.91 -0.02 4.82 16 Total: -1.00 -83.18 358.07 5.48 -77.70 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.25 Total: 19.16 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 6.56 Total: -11.42 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -3.00 Total: -82.90 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.30 Total: -50.90 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.96 Total: 48.36 kcal Total: -83.18 5.48 -77.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333085692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.467 kcal (2) G-P(sol) polarization free energy of solvation -83.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds