Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46914 * 2 1 4 4 C 1.50698 * 109.47135 * 120.00935 * 2 1 3 5 5 H 1.07996 * 120.00040 * 119.99906 * 4 2 1 6 6 C 1.37880 * 119.99881 * 299.99481 * 4 2 1 7 7 N 1.31507 * 120.00190 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99923 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47134 * 89.99868 * 8 6 4 10 10 H 1.48504 * 109.46916 * 209.99971 * 8 6 4 11 11 H 1.48506 * 109.47274 * 329.99892 * 8 6 4 12 12 N 1.46500 * 109.46605 * 240.00485 * 2 1 3 13 13 C 1.34780 * 120.00089 * 85.00372 * 12 2 1 14 14 O 1.21367 * 119.99880 * 359.97438 * 13 12 2 15 15 C 1.49332 * 120.00316 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99829 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00078 * 179.97438 * 15 13 12 18 18 C 1.39866 * 119.99844 * 184.37417 * 17 15 13 19 19 C 1.38944 * 120.19669 * 144.97356 * 18 17 15 20 20 C 1.37832 * 120.27350 * 180.16002 * 19 18 17 21 21 C 1.39323 * 120.33984 * 359.97438 * 20 19 18 22 22 C 1.38912 * 119.00092 * 359.72177 * 21 20 19 23 23 C 1.37672 * 120.86264 * 0.15668 * 22 21 20 24 24 C 1.51664 * 107.04721 * 180.56562 * 22 21 20 25 25 C 1.54706 * 101.93074 * 15.38335 * 24 22 21 26 26 H 1.08997 * 110.74864 * 93.19490 * 25 24 22 27 27 C 1.53003 * 110.74462 * 216.35675 * 25 24 22 28 28 O 1.36226 * 129.79628 * 179.07404 * 21 20 19 29 29 H 1.08994 * 109.47622 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46667 * 299.99177 * 1 2 3 31 31 H 1.08998 * 109.47670 * 59.99217 * 1 2 3 32 32 H 0.97002 * 120.00532 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00451 * 264.99873 * 12 2 1 34 34 H 0.96996 * 119.99940 * 4.65865 * 17 15 13 35 35 H 1.07996 * 119.85720 * 0.13760 * 19 18 17 36 36 H 1.07995 * 119.83007 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.04150 * 179.97438 * 23 22 21 38 38 H 1.08997 * 110.93766 * 133.54319 * 24 22 21 39 39 H 1.08995 * 110.93939 * 257.22449 * 24 22 21 40 40 H 1.09000 * 109.47355 * 60.00449 * 27 25 24 41 41 H 1.09004 * 109.46870 * 180.02562 * 27 25 24 42 42 H 1.08999 * 109.47257 * 300.00055 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4827 7 7 2.1381 -0.8594 3.5564 8 14 0.6249 1.2788 2.6543 9 1 -0.8027 0.8724 2.6999 10 1 0.9762 1.9947 3.9070 11 1 0.8472 2.1764 1.4922 12 7 2.0182 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8580 1.1594 -2.4117 15 6 2.6451 -0.7218 -3.5765 16 8 2.9346 -1.8993 -3.5219 17 7 2.7734 -0.0494 -4.7375 18 6 3.1521 -0.7280 -5.9004 19 6 2.6328 -0.3478 -7.1318 20 6 3.0024 -1.0175 -8.2784 21 6 3.9000 -2.0811 -8.2139 22 6 4.4190 -2.4504 -6.9794 23 6 4.0547 -1.7828 -5.8318 24 6 5.3637 -3.6114 -7.2236 25 6 5.5751 -3.5353 -8.7543 26 1 6.4584 -2.9431 -8.9932 27 6 5.6859 -4.9375 -9.3564 28 8 4.3793 -2.8791 -9.2085 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.9035 -0.5284 4.4375 33 1 2.2489 -1.6317 -1.1529 34 1 2.6070 0.9058 -4.7656 35 1 1.9366 0.4757 -7.1906 36 1 2.5941 -0.7162 -9.2317 37 1 4.4661 -2.0813 -4.8789 38 1 6.3046 -3.4663 -6.6928 39 1 4.9005 -4.5566 -6.9409 40 1 4.7700 -5.4929 -9.1550 41 1 5.8346 -4.8596 -10.4335 42 1 6.5327 -5.4588 -8.9099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336692469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = -65.876532 kcal Electronic energy + Delta-G solvation = -25678.900886 eV Core-core repulsion = 21817.865539 eV Total energy + Delta-G solvation = -3861.035346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49282 -40.56802 -38.73475 -37.43885 -35.46728 -34.41021 -33.43498 -32.45634 -31.28494 -30.15830 -29.38844 -26.96583 -25.39617 -24.88477 -22.81101 -21.98141 -21.85258 -20.84408 -19.83091 -18.80038 -17.84617 -17.28229 -17.02690 -16.55792 -15.90395 -15.83448 -15.42164 -15.26821 -14.51845 -14.38581 -14.16318 -13.73569 -13.59007 -13.42934 -13.31506 -13.20280 -13.00540 -12.82131 -12.66407 -12.35071 -12.29546 -11.95926 -11.73124 -11.46004 -11.38322 -11.33382 -11.02036 -10.86404 -10.27194 -9.97957 -9.75915 -9.34728 -9.26610 -9.05300 -8.85725 -8.41496 -7.92333 -6.26636 -4.30782 0.92077 1.11942 1.73677 2.52882 2.94309 3.18477 3.30807 3.33079 3.37422 3.59176 3.89434 4.16153 4.23097 4.25203 4.56272 4.68452 4.78505 4.86247 4.88796 5.00835 5.06980 5.14238 5.25066 5.34069 5.45383 5.55862 5.64688 5.70880 5.78329 6.07654 6.13167 6.19115 6.20836 6.24011 6.42017 6.48075 6.68760 6.87254 6.97653 7.07124 7.11185 7.35645 7.70285 8.00182 8.34741 8.47262 8.73391 9.31651 10.85285 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.002437 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.357527 B =11484.904857 C =12210.083990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.539 4.539 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.660 5.660 13 C 0.498 3.502 14 O -0.536 6.536 15 C 0.509 3.491 16 O -0.503 6.503 17 N -0.647 5.647 18 C 0.118 3.882 19 C -0.105 4.105 20 C -0.120 4.120 21 C 0.090 3.910 22 C -0.156 4.156 23 C -0.069 4.069 24 C -0.106 4.106 25 C 0.077 3.923 26 H 0.086 0.914 27 C -0.150 4.150 28 O -0.303 6.303 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.269 0.731 33 H 0.409 0.591 34 H 0.423 0.577 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -2.911 -24.916 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.577 4.577 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.310 5.310 13 C 0.277 3.723 14 O -0.415 6.415 15 C 0.291 3.709 16 O -0.377 6.377 17 N -0.294 5.294 18 C 0.024 3.976 19 C -0.126 4.126 20 C -0.139 4.139 21 C 0.045 3.955 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.143 4.143 25 C 0.021 3.979 26 H 0.104 0.896 27 C -0.207 4.207 28 O -0.218 6.218 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.261 0.739 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.021 -2.979 -24.811 25.489 hybrid contribution -0.534 0.720 0.428 0.993 sum 4.487 -2.258 -24.384 24.896 Atomic orbital electron populations 1.22471 0.98683 1.01332 0.99638 1.19318 0.90572 0.94793 0.82118 0.92797 1.20990 1.33729 1.14730 0.88271 0.89869 1.24821 0.95442 0.96736 0.95428 1.69856 1.44524 1.39979 0.98094 0.86880 0.80586 0.83471 0.77592 1.20164 1.21995 1.18628 1.46134 1.61410 1.14805 1.08611 1.19690 0.80924 0.87196 0.84539 1.90730 1.50787 1.15222 1.84752 1.20788 0.78265 0.87040 0.84774 1.90744 1.46822 1.15606 1.84494 1.43103 1.66837 1.13054 1.06438 1.17507 0.97337 0.96863 0.85854 1.20642 1.00117 1.01438 0.90363 1.19968 1.00318 0.94581 0.99026 1.19538 0.96904 0.92143 0.86936 1.20600 1.02852 0.99152 0.93181 1.20431 0.95208 0.94846 0.98454 1.21883 0.99469 0.97383 0.95556 1.23371 0.86980 0.94687 0.92875 0.89582 1.21889 1.03281 0.93731 1.01794 1.86847 1.40574 1.56672 1.37682 0.92433 0.93014 0.94353 0.92127 0.75547 0.73862 0.84461 0.84952 0.83836 0.88911 0.88808 0.91316 0.91368 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.96 37.16 0.33 -3.19 16 2 C 0.23 5.45 2.15 -69.08 -0.15 5.30 16 3 H 0.05 1.34 6.64 -51.93 -0.34 1.00 16 4 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 5 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 8 Si 0.89 21.10 24.37 -169.99 -4.14 16.95 16 9 H -0.27 -6.34 6.87 56.52 0.39 -5.95 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 N -0.66 -13.29 5.06 -55.40 -0.28 -13.57 16 13 C 0.50 9.23 7.85 -11.64 -0.09 9.13 16 14 O -0.54 -10.79 16.14 5.48 0.09 -10.71 16 15 C 0.51 8.12 7.73 -11.64 -0.09 8.03 16 16 O -0.50 -8.73 13.94 5.46 0.08 -8.66 16 17 N -0.65 -8.37 5.33 -10.25 -0.05 -8.42 16 18 C 0.12 1.47 6.30 -83.65 -0.53 0.94 16 19 C -0.11 -1.07 9.94 -39.47 -0.39 -1.46 16 20 C -0.12 -1.22 10.06 -39.33 -0.40 -1.61 16 21 C 0.09 1.03 7.04 -38.93 -0.27 0.76 16 22 C -0.16 -1.82 6.26 -104.10 -0.65 -2.47 16 23 C -0.07 -0.90 8.69 -39.51 -0.34 -1.24 16 24 C -0.11 -0.92 6.65 -26.51 -0.18 -1.10 16 25 C 0.08 0.61 4.26 -25.83 -0.11 0.50 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 C -0.15 -0.86 9.58 37.16 0.36 -0.51 16 28 O -0.30 -3.31 10.81 -20.46 -0.22 -3.53 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.15 3.27 -51.92 -0.17 0.98 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 7.81 8.01 -40.82 -0.33 7.48 16 34 H 0.42 4.71 8.30 -40.82 -0.34 4.37 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 2.03 6.26 -52.49 -0.33 1.70 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -31.37 350.15 -6.74 -38.11 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.33 Total: 9.21 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.93 Total: 0.50 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.44 Total: -47.15 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.37 -6.74 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336692469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.767 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds