Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46914 * 2 1 4 4 C 1.50698 * 109.47135 * 120.00935 * 2 1 3 5 5 H 1.07996 * 120.00040 * 119.99906 * 4 2 1 6 6 C 1.37880 * 119.99881 * 299.99481 * 4 2 1 7 7 N 1.31507 * 120.00190 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99923 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47134 * 89.99868 * 8 6 4 10 10 H 1.48504 * 109.46916 * 209.99971 * 8 6 4 11 11 H 1.48506 * 109.47274 * 329.99892 * 8 6 4 12 12 N 1.46500 * 109.46605 * 240.00485 * 2 1 3 13 13 C 1.34780 * 120.00089 * 85.00372 * 12 2 1 14 14 O 1.21367 * 119.99880 * 359.97438 * 13 12 2 15 15 C 1.49332 * 120.00316 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99829 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00078 * 179.97438 * 15 13 12 18 18 C 1.39866 * 119.99844 * 184.37417 * 17 15 13 19 19 C 1.38944 * 120.19669 * 144.97356 * 18 17 15 20 20 C 1.37832 * 120.27350 * 180.16002 * 19 18 17 21 21 C 1.39323 * 120.33984 * 359.97438 * 20 19 18 22 22 C 1.38912 * 119.00092 * 359.72177 * 21 20 19 23 23 C 1.37672 * 120.86264 * 0.15668 * 22 21 20 24 24 C 1.51664 * 107.04721 * 180.56562 * 22 21 20 25 25 C 1.54706 * 101.93074 * 15.38335 * 24 22 21 26 26 H 1.08997 * 110.74864 * 93.19490 * 25 24 22 27 27 C 1.53003 * 110.74462 * 216.35675 * 25 24 22 28 28 O 1.36226 * 129.79628 * 179.07404 * 21 20 19 29 29 H 1.08994 * 109.47622 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46667 * 299.99177 * 1 2 3 31 31 H 1.08998 * 109.47670 * 59.99217 * 1 2 3 32 32 H 0.97002 * 120.00532 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00451 * 264.99873 * 12 2 1 34 34 H 0.96996 * 119.99940 * 4.65865 * 17 15 13 35 35 H 1.07996 * 119.85720 * 0.13760 * 19 18 17 36 36 H 1.07995 * 119.83007 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.04150 * 179.97438 * 23 22 21 38 38 H 1.08997 * 110.93766 * 133.54319 * 24 22 21 39 39 H 1.08995 * 110.93939 * 257.22449 * 24 22 21 40 40 H 1.09000 * 109.47355 * 60.00449 * 27 25 24 41 41 H 1.09004 * 109.46870 * 180.02562 * 27 25 24 42 42 H 1.08999 * 109.47257 * 300.00055 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4827 7 7 2.1381 -0.8594 3.5564 8 14 0.6249 1.2788 2.6543 9 1 -0.8027 0.8724 2.6999 10 1 0.9762 1.9947 3.9070 11 1 0.8472 2.1764 1.4922 12 7 2.0182 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8580 1.1594 -2.4117 15 6 2.6451 -0.7218 -3.5765 16 8 2.9346 -1.8993 -3.5219 17 7 2.7734 -0.0494 -4.7375 18 6 3.1521 -0.7280 -5.9004 19 6 2.6328 -0.3478 -7.1318 20 6 3.0024 -1.0175 -8.2784 21 6 3.9000 -2.0811 -8.2139 22 6 4.4190 -2.4504 -6.9794 23 6 4.0547 -1.7828 -5.8318 24 6 5.3637 -3.6114 -7.2236 25 6 5.5751 -3.5353 -8.7543 26 1 6.4584 -2.9431 -8.9932 27 6 5.6859 -4.9375 -9.3564 28 8 4.3793 -2.8791 -9.2085 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.9035 -0.5284 4.4375 33 1 2.2489 -1.6317 -1.1529 34 1 2.6070 0.9058 -4.7656 35 1 1.9366 0.4757 -7.1906 36 1 2.5941 -0.7162 -9.2317 37 1 4.4661 -2.0813 -4.8789 38 1 6.3046 -3.4663 -6.6928 39 1 4.9005 -4.5566 -6.9409 40 1 4.7700 -5.4929 -9.1550 41 1 5.8346 -4.8596 -10.4335 42 1 6.5327 -5.4588 -8.9099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336692469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = -88.390204 kcal Electronic energy + Delta-G solvation = -25679.877152 eV Core-core repulsion = 21817.865539 eV Total energy + Delta-G solvation = -3862.011612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39808 -41.75315 -40.09440 -38.49157 -37.13681 -35.57878 -34.41416 -34.14395 -31.99432 -31.91788 -30.36045 -27.69888 -27.28338 -26.26842 -23.86492 -22.87931 -22.64258 -22.24876 -21.34608 -20.18663 -18.73717 -18.55498 -18.29453 -17.76531 -17.39629 -17.11904 -16.90141 -16.33913 -15.94179 -15.40019 -15.32467 -15.01858 -14.90289 -14.62270 -14.42721 -14.15625 -14.14074 -13.91528 -13.75167 -13.52481 -13.45615 -13.27476 -12.97037 -12.85948 -12.72730 -12.35601 -12.15784 -12.04668 -11.85126 -11.57953 -11.34331 -10.92977 -10.90041 -10.68256 -10.13567 -9.93076 -8.82913 -8.38829 -6.47337 -0.10313 0.25170 0.50970 1.25310 1.30333 1.37800 1.47050 2.05432 2.22076 2.26195 2.62859 2.64288 2.96667 3.31726 3.47218 3.56919 3.85050 4.01100 4.11838 4.19220 4.25177 4.38922 4.50631 4.53147 4.57536 4.62514 4.64249 4.73076 4.90993 4.91429 4.95146 5.03820 5.16225 5.21487 5.23210 5.25046 5.32564 5.35038 5.44511 5.57642 5.85821 6.09865 6.15876 6.46798 6.55565 6.70685 6.92718 7.20189 8.76495 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.002437 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.357527 B =11484.904857 C =12210.083990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.040 0.960 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.943 3.057 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.253 1.253 12 N -0.667 5.667 13 C 0.502 3.498 14 O -0.549 6.549 15 C 0.516 3.484 16 O -0.521 6.521 17 N -0.628 5.628 18 C 0.096 3.904 19 C -0.093 4.093 20 C -0.120 4.120 21 C 0.083 3.917 22 C -0.170 4.170 23 C -0.086 4.086 24 C -0.107 4.107 25 C 0.074 3.926 26 H 0.100 0.900 27 C -0.146 4.146 28 O -0.315 6.315 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.272 0.728 33 H 0.412 0.588 34 H 0.433 0.567 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -2.004 -27.399 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.571 5.571 8 Si 0.769 3.231 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.177 1.177 12 N -0.317 5.317 13 C 0.282 3.718 14 O -0.428 6.428 15 C 0.298 3.702 16 O -0.397 6.397 17 N -0.275 5.275 18 C 0.003 3.997 19 C -0.112 4.112 20 C -0.139 4.139 21 C 0.037 3.963 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.144 4.144 25 C 0.018 3.982 26 H 0.118 0.882 27 C -0.203 4.203 28 O -0.230 6.230 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.248 0.752 34 H 0.273 0.727 35 H 0.185 0.815 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.308 -2.064 -27.353 27.767 hybrid contribution -0.198 0.372 1.066 1.146 sum 4.109 -1.692 -26.287 26.660 Atomic orbital electron populations 1.22375 0.96952 1.02041 1.00260 1.19026 0.91817 0.93622 0.81910 0.94180 1.21196 1.32917 1.13815 0.89987 0.92953 1.25625 0.96825 0.99694 0.95068 1.69981 1.46403 1.41988 0.98769 0.85944 0.79586 0.79897 0.77658 1.18361 1.21976 1.17690 1.45974 1.62173 1.14970 1.08557 1.20015 0.80025 0.86925 0.84789 1.90714 1.51170 1.15830 1.85131 1.20184 0.78656 0.86628 0.84763 1.90753 1.48007 1.16223 1.84674 1.42914 1.65505 1.13372 1.05728 1.17692 0.98415 0.97454 0.86162 1.20922 0.99575 1.01608 0.89132 1.20331 0.99577 0.93908 1.00086 1.19839 0.97012 0.92458 0.86979 1.20862 1.03475 0.99915 0.92933 1.20392 0.96210 0.95816 0.98228 1.21988 0.99507 0.96422 0.96486 1.23630 0.86447 0.95874 0.92214 0.88228 1.21913 1.03748 0.92397 1.02264 1.86835 1.41664 1.56711 1.37836 0.91777 0.93362 0.92607 0.91903 0.75176 0.72735 0.81544 0.82454 0.85699 0.87678 0.88709 0.92081 0.90680 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.57 8.96 71.98 0.65 -5.92 16 2 C 0.24 11.07 2.15 44.24 0.10 11.16 16 3 H 0.04 1.98 6.64 -2.39 -0.02 1.96 16 4 C -0.54 -29.36 9.31 25.60 0.24 -29.13 16 5 H 0.05 3.09 7.98 -2.91 -0.02 3.07 16 6 C 0.03 1.55 5.45 84.66 0.46 2.01 16 7 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 8 Si 0.94 43.02 24.37 68.60 1.67 44.69 16 9 H -0.26 -11.03 6.87 99.48 0.68 -10.34 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 12 N -0.67 -26.86 5.06 -447.54 -2.27 -29.13 16 13 C 0.50 18.32 7.85 87.23 0.68 19.00 16 14 O -0.55 -21.43 16.14 -3.30 -0.05 -21.48 16 15 C 0.52 16.23 7.73 87.23 0.67 16.90 16 16 O -0.52 -18.23 13.94 -3.36 -0.05 -18.28 16 17 N -0.63 -15.49 5.33 -304.68 -1.62 -17.11 16 18 C 0.10 2.26 6.30 38.21 0.24 2.50 16 19 C -0.09 -1.65 9.94 22.34 0.22 -1.43 16 20 C -0.12 -2.14 10.06 22.43 0.23 -1.92 16 21 C 0.08 1.77 7.04 22.69 0.16 1.93 16 22 C -0.17 -3.85 6.26 -19.53 -0.12 -3.97 16 23 C -0.09 -2.23 8.69 22.32 0.19 -2.04 16 24 C -0.11 -1.77 6.65 30.74 0.20 -1.57 16 25 C 0.07 1.05 4.26 31.18 0.13 1.18 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 C -0.15 -1.40 9.58 71.98 0.69 -0.71 16 28 O -0.32 -6.38 10.81 -96.13 -1.04 -7.42 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 2.03 3.27 -2.38 -0.01 2.02 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.41 16.06 8.01 -92.71 -0.74 15.31 16 34 H 0.43 8.86 8.30 -92.71 -0.77 8.09 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.13 3.65 6.26 -2.91 -0.02 3.63 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.52 7.92 -2.39 -0.02 1.50 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -67.77 350.15 1.18 -66.59 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.51 Total: 29.42 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.75 Total: 8.01 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.59 Total: -101.54 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.14 Total: -47.18 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.67 Total: 44.69 kcal Total: -67.77 1.18 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336692469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.796 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds