Wall clock time and date at job start Tue Mar 31 2020 12:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47397 * 2 1 4 4 C 1.50707 * 109.47319 * 239.99693 * 2 1 3 5 5 H 1.07995 * 120.00035 * 245.39753 * 4 2 1 6 6 C 1.37868 * 119.99776 * 65.39817 * 4 2 1 7 7 N 1.31517 * 120.00530 * 6.87283 * 6 4 2 8 8 Si 1.86806 * 119.99993 * 186.87224 * 6 4 2 9 9 H 1.48497 * 109.46924 * 94.98958 * 8 6 4 10 10 H 1.48507 * 109.46947 * 214.98862 * 8 6 4 11 11 H 1.48495 * 109.47016 * 334.98611 * 8 6 4 12 12 N 1.46504 * 109.47100 * 119.99914 * 2 1 3 13 13 C 1.34775 * 120.00089 * 275.00233 * 12 2 1 14 14 O 1.21367 * 119.99562 * 359.97438 * 13 12 2 15 15 C 1.49332 * 120.00490 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99491 * 359.97438 * 15 13 12 17 17 N 1.34775 * 120.00490 * 180.02562 * 15 13 12 18 18 C 1.39864 * 119.99844 * 185.12094 * 17 15 13 19 19 C 1.38945 * 120.19103 * 213.21930 * 18 17 15 20 20 C 1.37833 * 120.27069 * 179.85551 * 19 18 17 21 21 C 1.39322 * 120.33647 * 359.95622 * 20 19 18 22 22 C 1.38917 * 119.00828 * 0.39361 * 21 20 19 23 23 C 1.37671 * 120.85021 * 359.43320 * 22 21 20 24 24 C 1.51657 * 107.04996 * 179.02384 * 22 21 20 25 25 C 1.54707 * 101.94804 * 344.85053 * 24 22 21 26 26 H 1.09001 * 110.75038 * 266.93452 * 25 24 22 27 27 C 1.53005 * 110.90188 * 143.66128 * 25 24 22 28 28 O 1.36222 * 129.80341 * 180.97114 * 21 20 19 29 29 H 1.09005 * 109.46812 * 54.65199 * 1 2 3 30 30 H 1.09003 * 109.47496 * 174.64932 * 1 2 3 31 31 H 1.09001 * 109.47570 * 294.65295 * 1 2 3 32 32 H 0.96996 * 120.00515 * 180.02562 * 7 6 4 33 33 H 0.96995 * 119.99818 * 94.99519 * 12 2 1 34 34 H 0.97000 * 119.99840 * 5.12135 * 17 15 13 35 35 H 1.08001 * 119.86513 * 359.82321 * 19 18 17 36 36 H 1.07995 * 119.83410 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.03574 * 180.36422 * 23 22 21 38 38 H 1.08996 * 110.93425 * 103.01240 * 24 22 21 39 39 H 1.09003 * 110.93624 * 226.69073 * 24 22 21 40 40 H 1.09000 * 109.47266 * 305.09280 * 27 25 24 41 41 H 1.08999 * 109.47011 * 65.09554 * 27 25 24 42 42 H 1.08998 * 109.46713 * 185.09267 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5795 -1.6366 -1.1337 6 6 1.7935 -0.1782 -2.4796 7 7 1.2480 1.0131 -2.5935 8 14 2.2446 -1.1490 -4.0105 9 1 1.0549 -1.8965 -4.4910 10 1 2.7046 -0.2162 -5.0705 11 1 3.3330 -2.1060 -3.6868 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8587 1.1594 2.4115 15 6 2.6442 -0.7223 3.5767 16 8 2.9320 -1.9003 3.5224 17 7 2.7724 -0.0501 4.7378 18 6 3.3380 -0.6794 5.8514 19 6 2.9002 -0.3614 7.1311 20 6 3.4544 -0.9827 8.2295 21 6 4.4577 -1.9357 8.0672 22 6 4.8945 -2.2422 6.7846 23 6 4.3414 -1.6266 5.6845 24 6 5.9924 -3.2791 6.9248 25 6 6.3376 -3.1786 8.4295 26 1 7.1596 -2.4813 8.5914 27 6 6.6762 -4.5553 9.0049 28 8 5.1199 -2.6726 9.0021 29 1 -0.3633 0.5946 -0.8383 30 1 -0.3634 -1.0232 -0.0958 31 1 -0.3634 0.4287 0.9340 32 1 1.0797 1.3875 -3.4724 33 1 2.2489 -1.6317 1.1527 34 1 2.4723 0.8702 4.8011 35 1 2.1227 0.3761 7.2657 36 1 3.1090 -0.7299 9.2210 37 1 4.6869 -1.8792 4.6929 38 1 5.6228 -4.2737 6.6755 39 1 6.8539 -3.0197 6.3094 40 1 5.8557 -5.2445 8.8050 41 1 7.5873 -4.9300 8.5385 42 1 6.8267 -4.4722 10.0812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336692870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:46 Heat of formation + Delta-G solvation = -76.652742 kcal Electronic energy + Delta-G solvation = -25616.322716 eV Core-core repulsion = 21754.820078 eV Total energy + Delta-G solvation = -3861.502638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45574 -40.47083 -38.57754 -37.36511 -35.25268 -34.31694 -33.40918 -32.41651 -31.26165 -29.56602 -29.09939 -26.94327 -25.35560 -24.79508 -22.73883 -21.96051 -21.81350 -20.78430 -19.67359 -18.69603 -17.80214 -17.27320 -16.96327 -16.25986 -15.83661 -15.66469 -15.25075 -15.09996 -14.49417 -14.25728 -14.06388 -13.71581 -13.57727 -13.38470 -13.19098 -13.18706 -12.79754 -12.64929 -12.48945 -12.33118 -11.91964 -11.69418 -11.35517 -11.32834 -11.14705 -11.10372 -10.98603 -10.82164 -10.44614 -10.31972 -9.94735 -9.22127 -9.15928 -8.99638 -8.63101 -8.18717 -7.85920 -6.21680 -4.28465 0.96275 1.14625 1.85927 2.63252 2.97822 3.22209 3.29553 3.32311 3.44408 3.70940 3.98467 4.18824 4.24999 4.33482 4.58211 4.70601 4.81048 4.89690 5.03698 5.05566 5.13163 5.15780 5.27203 5.35948 5.47930 5.57399 5.66818 5.73307 5.80820 6.10311 6.17420 6.23296 6.51697 6.65632 6.74522 6.93398 6.98512 7.07208 7.17349 7.36768 7.57936 7.68216 7.88317 7.93351 8.40187 8.58813 8.82376 9.37731 10.86873 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.002448 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.485252 B =11433.371968 C =12390.392584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.260 3.740 3 H 0.060 0.940 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.507 3.493 16 O -0.506 6.506 17 N -0.648 5.648 18 C 0.124 3.876 19 C -0.108 4.108 20 C -0.118 4.118 21 C 0.088 3.912 22 C -0.154 4.154 23 C -0.071 4.071 24 C -0.106 4.106 25 C 0.077 3.923 26 H 0.086 0.914 27 C -0.149 4.149 28 O -0.303 6.303 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.424 0.576 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -6.212 21.622 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.159 3.841 3 H 0.078 0.922 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.413 6.413 15 C 0.290 3.710 16 O -0.380 6.380 17 N -0.295 5.295 18 C 0.030 3.970 19 C -0.128 4.128 20 C -0.137 4.137 21 C 0.042 3.958 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.143 4.143 25 C 0.021 3.979 26 H 0.104 0.896 27 C -0.207 4.207 28 O -0.218 6.218 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.262 0.738 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.995 -6.118 21.574 23.807 hybrid contribution 0.180 -0.469 -1.020 1.137 sum 8.174 -6.587 20.554 23.080 Atomic orbital electron populations 1.22033 0.98099 1.00065 0.99898 1.18999 0.91092 0.94620 0.79401 0.92174 1.21160 1.37414 1.08971 0.90137 0.91719 1.24882 0.94784 0.94698 0.99108 1.69957 1.42593 1.14942 1.24364 0.86416 0.78756 0.79742 0.82136 1.20450 1.21051 1.19707 1.46494 1.61267 1.14520 1.09340 1.19649 0.81214 0.87288 0.84523 1.90737 1.50669 1.15183 1.84724 1.20971 0.78236 0.86938 0.84834 1.90739 1.47348 1.15181 1.84701 1.43173 1.60146 1.17270 1.08946 1.17507 0.95040 0.98009 0.86489 1.20626 1.00345 1.01772 0.90087 1.19967 0.98043 0.96292 0.99396 1.19513 0.95627 0.93137 0.87517 1.20567 1.01541 1.00387 0.93076 1.20284 0.93977 0.95826 0.99017 1.21878 0.97358 0.98800 0.96235 1.23371 0.86282 0.96647 0.91613 0.89633 1.21883 1.02525 0.94227 1.02021 1.86849 1.33949 1.63981 1.37028 0.90373 0.94668 0.96144 0.92438 0.76345 0.73833 0.84449 0.84965 0.84278 0.88840 0.88942 0.91382 0.90261 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.26 37.15 0.34 -3.03 16 2 C 0.26 6.44 2.43 -69.08 -0.17 6.27 16 3 H 0.06 1.69 7.54 -51.93 -0.39 1.30 16 4 C -0.54 -14.07 8.67 -34.44 -0.30 -14.37 16 5 H 0.06 1.64 7.73 -52.49 -0.41 1.23 16 6 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 7 N -0.88 -24.42 12.07 55.43 0.67 -23.75 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.67 -14.08 5.06 -55.40 -0.28 -14.36 16 13 C 0.49 9.75 7.85 -11.64 -0.09 9.66 16 14 O -0.53 -11.59 16.15 5.48 0.09 -11.50 16 15 C 0.51 8.51 7.63 -11.64 -0.09 8.42 16 16 O -0.51 -9.11 14.16 5.46 0.08 -9.04 16 17 N -0.65 -8.88 5.33 -10.25 -0.05 -8.93 16 18 C 0.12 1.60 6.29 -83.65 -0.53 1.08 16 19 C -0.11 -1.14 9.94 -39.47 -0.39 -1.54 16 20 C -0.12 -1.24 10.06 -39.33 -0.40 -1.63 16 21 C 0.09 1.03 7.03 -38.93 -0.27 0.76 16 22 C -0.15 -1.85 6.27 -104.11 -0.65 -2.50 16 23 C -0.07 -0.95 8.65 -39.51 -0.34 -1.30 16 24 C -0.11 -0.95 6.65 -26.51 -0.18 -1.13 16 25 C 0.08 0.63 4.25 -25.83 -0.11 0.52 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 27 C -0.15 -0.88 9.61 37.16 0.36 -0.53 16 28 O -0.30 -3.39 10.81 -20.45 -0.22 -3.61 16 29 H 0.08 1.99 6.92 -51.93 -0.36 1.63 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.40 7.89 7.99 -40.82 -0.33 7.57 16 34 H 0.42 5.07 8.30 -40.82 -0.34 4.73 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 2.02 6.42 -52.49 -0.34 1.69 16 38 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -30.54 358.49 -7.76 -38.30 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.51 Total: 9.68 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.91 Total: 2.43 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.33 Total: -47.05 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.54 -7.76 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336692870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.352 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds