Wall clock time and date at job start Tue Mar 31 2020 12:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47397 * 2 1 4 4 C 1.50707 * 109.47319 * 239.99693 * 2 1 3 5 5 H 1.07995 * 120.00035 * 245.39753 * 4 2 1 6 6 C 1.37868 * 119.99776 * 65.39817 * 4 2 1 7 7 N 1.31517 * 120.00530 * 6.87283 * 6 4 2 8 8 Si 1.86806 * 119.99993 * 186.87224 * 6 4 2 9 9 H 1.48497 * 109.46924 * 94.98958 * 8 6 4 10 10 H 1.48507 * 109.46947 * 214.98862 * 8 6 4 11 11 H 1.48495 * 109.47016 * 334.98611 * 8 6 4 12 12 N 1.46504 * 109.47100 * 119.99914 * 2 1 3 13 13 C 1.34775 * 120.00089 * 275.00233 * 12 2 1 14 14 O 1.21367 * 119.99562 * 359.97438 * 13 12 2 15 15 C 1.49332 * 120.00490 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99491 * 359.97438 * 15 13 12 17 17 N 1.34775 * 120.00490 * 180.02562 * 15 13 12 18 18 C 1.39864 * 119.99844 * 185.12094 * 17 15 13 19 19 C 1.38945 * 120.19103 * 213.21930 * 18 17 15 20 20 C 1.37833 * 120.27069 * 179.85551 * 19 18 17 21 21 C 1.39322 * 120.33647 * 359.95622 * 20 19 18 22 22 C 1.38917 * 119.00828 * 0.39361 * 21 20 19 23 23 C 1.37671 * 120.85021 * 359.43320 * 22 21 20 24 24 C 1.51657 * 107.04996 * 179.02384 * 22 21 20 25 25 C 1.54707 * 101.94804 * 344.85053 * 24 22 21 26 26 H 1.09001 * 110.75038 * 266.93452 * 25 24 22 27 27 C 1.53005 * 110.90188 * 143.66128 * 25 24 22 28 28 O 1.36222 * 129.80341 * 180.97114 * 21 20 19 29 29 H 1.09005 * 109.46812 * 54.65199 * 1 2 3 30 30 H 1.09003 * 109.47496 * 174.64932 * 1 2 3 31 31 H 1.09001 * 109.47570 * 294.65295 * 1 2 3 32 32 H 0.96996 * 120.00515 * 180.02562 * 7 6 4 33 33 H 0.96995 * 119.99818 * 94.99519 * 12 2 1 34 34 H 0.97000 * 119.99840 * 5.12135 * 17 15 13 35 35 H 1.08001 * 119.86513 * 359.82321 * 19 18 17 36 36 H 1.07995 * 119.83410 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.03574 * 180.36422 * 23 22 21 38 38 H 1.08996 * 110.93425 * 103.01240 * 24 22 21 39 39 H 1.09003 * 110.93624 * 226.69073 * 24 22 21 40 40 H 1.09000 * 109.47266 * 305.09280 * 27 25 24 41 41 H 1.08999 * 109.47011 * 65.09554 * 27 25 24 42 42 H 1.08998 * 109.46713 * 185.09267 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5795 -1.6366 -1.1337 6 6 1.7935 -0.1782 -2.4796 7 7 1.2480 1.0131 -2.5935 8 14 2.2446 -1.1490 -4.0105 9 1 1.0549 -1.8965 -4.4910 10 1 2.7046 -0.2162 -5.0705 11 1 3.3330 -2.1060 -3.6868 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8587 1.1594 2.4115 15 6 2.6442 -0.7223 3.5767 16 8 2.9320 -1.9003 3.5224 17 7 2.7724 -0.0501 4.7378 18 6 3.3380 -0.6794 5.8514 19 6 2.9002 -0.3614 7.1311 20 6 3.4544 -0.9827 8.2295 21 6 4.4577 -1.9357 8.0672 22 6 4.8945 -2.2422 6.7846 23 6 4.3414 -1.6266 5.6845 24 6 5.9924 -3.2791 6.9248 25 6 6.3376 -3.1786 8.4295 26 1 7.1596 -2.4813 8.5914 27 6 6.6762 -4.5553 9.0049 28 8 5.1199 -2.6726 9.0021 29 1 -0.3633 0.5946 -0.8383 30 1 -0.3634 -1.0232 -0.0958 31 1 -0.3634 0.4287 0.9340 32 1 1.0797 1.3875 -3.4724 33 1 2.2489 -1.6317 1.1527 34 1 2.4723 0.8702 4.8011 35 1 2.1227 0.3761 7.2657 36 1 3.1090 -0.7299 9.2210 37 1 4.6869 -1.8792 4.6929 38 1 5.6228 -4.2737 6.6755 39 1 6.8539 -3.0197 6.3094 40 1 5.8557 -5.2445 8.8050 41 1 7.5873 -4.9300 8.5385 42 1 6.8267 -4.4722 10.0812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336692870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:45 Heat of formation + Delta-G solvation = -97.008564 kcal Electronic energy + Delta-G solvation = -25617.205411 eV Core-core repulsion = 21754.820078 eV Total energy + Delta-G solvation = -3862.385333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38816 -41.72193 -40.01812 -38.48347 -36.99160 -35.56540 -34.31940 -34.13956 -31.99356 -31.23526 -30.30311 -27.70151 -27.35306 -26.18339 -23.84019 -22.88463 -22.64015 -22.25983 -21.27003 -20.14566 -18.70822 -18.38846 -18.21173 -17.68948 -17.30309 -16.90959 -16.86443 -16.30929 -15.89782 -15.35374 -15.25178 -15.09870 -14.59374 -14.44127 -14.41551 -14.12945 -13.93171 -13.83318 -13.53053 -13.45195 -13.05571 -13.00629 -12.96517 -12.82547 -12.67352 -12.40250 -12.35744 -12.14351 -12.05362 -11.83615 -11.19315 -10.94843 -10.66316 -10.62472 -10.00893 -9.93237 -8.80855 -8.23701 -6.37819 -0.10601 0.24561 0.56006 1.28867 1.44699 1.46177 1.56694 2.09268 2.23192 2.38495 2.65218 2.71311 3.09357 3.35638 3.50345 3.57314 3.83968 4.01149 4.11354 4.18851 4.25134 4.51795 4.57677 4.64461 4.68776 4.73617 4.82702 4.90190 4.95383 4.96436 5.03285 5.17951 5.23116 5.24394 5.28414 5.34247 5.42047 5.56167 5.58784 5.70932 5.94238 5.99290 6.15973 6.52273 6.65179 6.76547 7.05329 7.33579 8.85314 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.002448 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.485252 B =11433.371968 C =12390.392584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.556 6.556 15 C 0.517 3.483 16 O -0.520 6.520 17 N -0.630 5.630 18 C 0.099 3.901 19 C -0.096 4.096 20 C -0.118 4.118 21 C 0.081 3.919 22 C -0.168 4.168 23 C -0.088 4.088 24 C -0.107 4.107 25 C 0.073 3.927 26 H 0.099 0.901 27 C -0.146 4.146 28 O -0.315 6.315 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.432 0.568 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.828 -7.368 23.163 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.164 3.836 3 H 0.037 0.963 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.189 1.189 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.436 6.436 15 C 0.299 3.701 16 O -0.396 6.396 17 N -0.277 5.277 18 C 0.006 3.994 19 C -0.115 4.115 20 C -0.137 4.137 21 C 0.036 3.964 22 C -0.169 4.169 23 C -0.108 4.108 24 C -0.143 4.143 25 C 0.018 3.982 26 H 0.117 0.883 27 C -0.203 4.203 28 O -0.230 6.230 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.271 0.729 35 H 0.184 0.816 36 H 0.176 0.824 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.714 -7.279 23.168 25.801 hybrid contribution 0.018 -0.082 -1.349 1.352 sum 8.732 -7.361 21.819 24.627 Atomic orbital electron populations 1.21862 0.97408 1.00298 0.99298 1.18641 0.91585 0.92709 0.80690 0.96297 1.21469 1.37522 1.09219 0.90861 0.91126 1.25730 0.94658 0.95486 1.02144 1.70080 1.43589 1.16396 1.25121 0.85366 0.78718 0.78312 0.78174 1.19733 1.20991 1.18940 1.46258 1.61831 1.14809 1.09052 1.20096 0.80223 0.86996 0.85062 1.90719 1.51352 1.16244 1.85260 1.20218 0.78643 0.86540 0.84705 1.90742 1.48422 1.15551 1.84853 1.42981 1.59081 1.17424 1.08221 1.17704 0.95918 0.98960 0.86832 1.20907 1.00228 1.01564 0.88834 1.20326 0.97296 0.95533 1.00533 1.19814 0.95816 0.93241 0.87572 1.20839 1.02296 1.00928 0.92840 1.20258 0.94965 0.96812 0.98749 1.21987 0.97012 0.98096 0.97247 1.23641 0.85573 0.98100 0.90878 0.88302 1.21909 1.03198 0.92708 1.02454 1.86840 1.34980 1.63880 1.37331 0.92477 0.93559 0.95461 0.92322 0.75430 0.72857 0.81612 0.82409 0.86059 0.88610 0.87655 0.92029 0.88170 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 9.26 71.98 0.67 -5.58 16 2 C 0.27 13.48 2.43 44.24 0.11 13.59 16 3 H 0.02 1.12 7.54 -2.39 -0.02 1.10 16 4 C -0.55 -29.09 8.67 25.60 0.22 -28.87 16 5 H 0.07 3.55 7.73 -2.91 -0.02 3.53 16 6 C 0.02 1.11 5.27 84.65 0.45 1.55 16 7 N -0.91 -51.49 12.07 21.44 0.26 -51.23 16 8 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.67 -28.68 5.06 -447.54 -2.27 -30.94 16 13 C 0.50 19.79 7.85 87.23 0.68 20.47 16 14 O -0.56 -24.51 16.15 -3.30 -0.05 -24.56 16 15 C 0.52 17.32 7.63 87.23 0.67 17.99 16 16 O -0.52 -18.79 14.16 -3.36 -0.05 -18.84 16 17 N -0.63 -16.84 5.33 -304.69 -1.62 -18.46 16 18 C 0.10 2.47 6.29 38.21 0.24 2.71 16 19 C -0.10 -1.81 9.94 22.34 0.22 -1.59 16 20 C -0.12 -2.20 10.06 22.43 0.23 -1.97 16 21 C 0.08 1.78 7.03 22.69 0.16 1.94 16 22 C -0.17 -3.87 6.27 -19.53 -0.12 -4.00 16 23 C -0.09 -2.34 8.65 22.32 0.19 -2.15 16 24 C -0.11 -1.78 6.65 30.74 0.20 -1.58 16 25 C 0.07 1.06 4.25 31.18 0.13 1.19 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 C -0.15 -1.41 9.61 71.98 0.69 -0.71 16 28 O -0.32 -6.48 10.81 -96.09 -1.04 -7.52 16 29 H 0.06 2.97 6.92 -2.38 -0.02 2.95 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.41 16.20 7.99 -92.71 -0.74 15.46 16 34 H 0.43 9.95 8.30 -92.71 -0.77 9.18 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.12 3.62 6.42 -2.91 -0.02 3.60 16 38 H 0.10 1.54 7.91 -2.39 -0.02 1.52 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -66.12 358.49 1.56 -64.56 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.44 Total: 30.26 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 4.74 Total: 13.00 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -3.63 Total: -100.64 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -1.14 Total: -50.92 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -66.12 1.56 -64.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336692870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.445 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds