Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.50700 * 109.47018 * 240.00281 * 2 1 3 5 5 H 1.08002 * 120.00367 * 239.99626 * 4 2 1 6 6 C 1.37874 * 120.00181 * 59.99776 * 4 2 1 7 7 N 1.31510 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00155 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46684 * 60.00320 * 8 6 4 10 10 H 1.48505 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46962 * 300.00282 * 8 6 4 12 12 N 1.46498 * 109.47379 * 120.00248 * 2 1 3 13 13 C 1.46504 * 120.00108 * 65.80205 * 12 2 1 14 14 C 1.34773 * 120.00261 * 245.80330 * 12 2 1 15 15 O 1.21279 * 120.00500 * 185.57588 * 14 12 2 16 16 C 1.50710 * 119.99676 * 5.57365 * 14 12 2 17 17 C 1.52997 * 109.44353 * 281.55530 * 16 14 12 18 18 O 1.42895 * 109.43108 * 41.44860 * 16 14 12 19 19 C 1.36005 * 117.00706 * 165.52779 * 18 16 14 20 20 C 1.38441 * 120.43445 * 148.98807 * 19 18 16 21 21 C 1.38293 * 119.91688 * 178.40441 * 20 19 18 22 22 C 1.38287 * 120.23154 * 0.02562 * 21 20 19 23 23 C 1.38270 * 120.17358 * 0.32791 * 22 21 20 24 24 C 1.38522 * 119.88226 * 359.97438 * 23 22 21 25 25 N 1.40155 * 120.65433 * 179.78746 * 24 23 22 26 26 C 1.34951 * 119.23773 * 190.96400 * 25 24 23 27 27 O 1.21295 * 120.14498 * 185.76010 * 26 25 24 28 28 H 1.08997 * 109.46903 * 299.99346 * 1 2 3 29 29 H 1.09000 * 109.46910 * 60.00202 * 1 2 3 30 30 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 31 31 H 0.97007 * 120.00584 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47163 * 271.82606 * 13 12 2 33 33 H 1.09005 * 109.47192 * 31.82441 * 13 12 2 34 34 H 1.08994 * 109.47290 * 151.82246 * 13 12 2 35 35 H 1.09005 * 109.46872 * 300.06452 * 17 16 14 36 36 H 1.09004 * 109.47443 * 60.06375 * 17 16 14 37 37 H 1.08994 * 109.46675 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.04023 * 358.37690 * 20 19 18 39 39 H 1.07999 * 119.88612 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.91379 * 180.29406 * 22 21 20 41 41 H 1.08001 * 120.05602 * 179.70342 * 23 22 21 42 42 H 0.97002 * 120.38069 * 10.98620 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.7723 -2.1249 1.3657 14 6 2.6941 -0.0067 2.1406 15 8 3.1857 -0.5949 3.0803 16 6 2.8388 1.4893 2.0288 17 6 3.9331 1.8206 1.0122 18 8 1.6005 2.0556 1.5954 19 6 1.4562 3.4013 1.7299 20 6 0.6763 4.1157 0.8366 21 6 0.5101 5.4785 1.0026 22 6 1.1209 6.1310 2.0578 23 6 1.9073 5.4253 2.9497 24 6 2.0828 4.0611 2.7855 25 7 2.8800 3.3307 3.6774 26 6 3.2147 2.0593 3.3729 27 8 3.8146 1.3780 4.1773 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.7094 1.1619 -3.4844 32 1 0.8123 -2.2728 1.8600 33 1 1.7565 -2.6088 0.3890 34 1 2.5651 -2.5601 1.9739 35 1 4.8775 1.3865 1.3406 36 1 3.6625 1.4089 0.0399 37 1 4.0384 2.9025 0.9315 38 1 0.1985 3.6093 0.0109 39 1 -0.0981 6.0354 0.3052 40 1 0.9839 7.1946 2.1853 41 1 2.3873 5.9376 3.7704 42 1 3.1873 3.7343 4.5042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339290268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -54.231112 kcal Electronic energy + Delta-G solvation = -28629.019227 eV Core-core repulsion = 24768.488864 eV Total energy + Delta-G solvation = -3860.530363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68753 -39.28406 -38.43984 -37.25722 -35.52321 -34.93654 -32.65902 -32.01140 -30.22086 -29.15441 -28.88643 -26.62258 -25.28897 -24.90734 -23.45899 -22.74034 -21.54666 -20.04862 -19.02374 -18.29816 -17.57666 -16.65258 -16.35625 -16.02409 -15.64337 -15.40020 -14.97068 -14.62880 -14.54911 -14.37408 -14.09542 -13.76909 -13.45138 -13.08941 -12.91620 -12.55008 -12.33420 -12.06318 -12.01387 -11.87762 -11.63490 -11.44966 -11.29386 -11.08408 -11.01779 -10.88410 -10.69622 -10.66262 -10.22987 -10.20085 -9.82791 -9.25286 -8.98167 -8.60373 -8.48617 -7.80807 -7.65039 -6.17897 -4.25756 1.16386 1.34382 2.41337 2.77960 2.96223 3.22488 3.27684 3.30393 3.54177 3.74067 3.89314 4.16355 4.30052 4.66225 4.97820 4.98528 4.98804 5.13901 5.23322 5.39726 5.45745 5.73215 5.77862 5.90540 6.09332 6.13203 6.21099 6.24171 6.34686 6.50548 6.52870 6.66425 6.67588 6.75666 6.87690 6.90027 7.06749 7.20538 7.45617 7.48461 7.67475 7.89141 7.96441 8.13126 8.38254 8.69759 8.89310 9.41132 10.86420 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.005977 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.645613 B = 4683.154235 C = 6068.332687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.247 3.753 3 H 0.077 0.923 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.575 5.575 13 C 0.090 3.910 14 C 0.527 3.473 15 O -0.527 6.527 16 C 0.096 3.904 17 C -0.173 4.173 18 O -0.268 6.268 19 C 0.083 3.917 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.133 4.133 24 C 0.092 3.908 25 N -0.664 5.664 26 C 0.503 3.497 27 O -0.466 6.466 28 H 0.016 0.984 29 H 0.092 0.908 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 10.559 5.647 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.147 3.853 3 H 0.094 0.906 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.305 5.305 13 C -0.052 4.052 14 C 0.310 3.690 15 O -0.405 6.405 16 C 0.051 3.949 17 C -0.231 4.231 18 O -0.182 6.182 19 C 0.036 3.964 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.153 4.153 24 C -0.004 4.004 25 N -0.312 5.312 26 C 0.287 3.713 27 O -0.335 6.335 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.236 9.642 6.227 11.480 hybrid contribution 0.481 -0.041 -0.514 0.705 sum 0.245 9.601 5.713 11.175 Atomic orbital electron populations 1.22042 0.97898 0.99360 1.00914 1.19416 0.91910 0.94119 0.79869 0.90563 1.21339 1.32215 1.13446 0.90236 0.92036 1.24832 0.94751 0.94952 0.98780 1.69853 1.35915 1.22419 1.23933 0.86597 0.79246 0.79833 0.82008 1.20197 1.21166 1.20234 1.48198 1.51941 1.09264 1.21069 1.21512 0.99915 0.81346 1.02466 1.19168 0.80329 0.86128 0.83390 1.90765 1.48477 1.68239 1.33032 1.22012 0.86783 0.94203 0.91914 1.22462 0.97016 1.03015 1.00573 1.86701 1.33931 1.17473 1.80107 1.18781 0.99595 0.83719 0.94338 1.20765 0.99508 0.93352 0.97930 1.20994 1.00407 0.93523 0.98375 1.20892 0.97929 0.99790 0.95047 1.20512 1.02356 0.90837 1.01639 1.18109 0.97486 0.92484 0.92348 1.43709 1.51087 1.13454 1.22914 1.20831 0.79820 0.81224 0.89444 1.90859 1.37360 1.56791 1.48538 0.96474 0.88928 0.95487 0.92580 0.93818 0.90000 0.91880 0.90186 0.86890 0.91131 0.83377 0.85095 0.85534 0.85472 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.87 37.16 0.33 -2.91 16 2 C 0.25 5.66 1.36 -69.08 -0.09 5.56 16 3 H 0.08 1.80 3.49 -51.93 -0.18 1.61 16 4 C -0.53 -13.20 7.98 -34.44 -0.27 -13.47 16 5 H 0.06 1.54 6.90 -52.49 -0.36 1.18 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -22.22 11.32 55.43 0.63 -21.59 16 8 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.57 -12.63 2.75 -175.26 -0.48 -13.12 16 13 C 0.09 1.79 9.73 59.85 0.58 2.37 16 14 C 0.53 11.79 6.63 -10.98 -0.07 11.71 16 15 O -0.53 -12.98 14.10 -18.17 -0.26 -13.23 16 16 C 0.10 1.88 0.66 -92.90 -0.06 1.82 16 17 C -0.17 -3.09 8.28 37.16 0.31 -2.78 16 18 O -0.27 -5.14 6.33 -19.76 -0.12 -5.26 16 19 C 0.08 1.34 5.91 -39.09 -0.23 1.11 16 20 C -0.10 -1.39 9.99 -39.49 -0.39 -1.79 16 21 C -0.11 -1.28 10.04 -39.54 -0.40 -1.68 16 22 C -0.12 -1.18 10.04 -39.55 -0.40 -1.57 16 23 C -0.13 -1.44 9.94 -39.46 -0.39 -1.84 16 24 C 0.09 1.29 6.57 -83.53 -0.55 0.74 16 25 N -0.66 -9.73 5.46 -9.71 -0.05 -9.78 16 26 C 0.50 9.44 6.89 -10.88 -0.07 9.37 16 27 O -0.47 -10.15 15.52 -18.18 -0.28 -10.44 16 28 H 0.02 0.36 7.73 -51.93 -0.40 -0.05 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.59 6.57 -51.93 -0.34 1.25 16 34 H 0.06 1.22 7.30 -51.93 -0.38 0.84 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.11 2.23 6.28 -51.93 -0.33 1.90 16 37 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 38 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.41 4.83 8.87 -40.82 -0.36 4.47 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -30.14 340.23 -7.43 -37.57 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.15 Total: 7.79 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.81 Total: 8.29 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.09 Total: -44.49 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.66 Total: -28.93 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -7.43 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.662 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds