Wall clock time and date at job start Tue Mar 31 2020 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.50700 * 109.47018 * 240.00281 * 2 1 3 5 5 H 1.08002 * 120.00367 * 239.99626 * 4 2 1 6 6 C 1.37874 * 120.00181 * 59.99776 * 4 2 1 7 7 N 1.31510 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00155 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46684 * 60.00320 * 8 6 4 10 10 H 1.48505 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46962 * 300.00282 * 8 6 4 12 12 N 1.46498 * 109.47379 * 120.00248 * 2 1 3 13 13 C 1.46504 * 120.00108 * 65.80205 * 12 2 1 14 14 C 1.34773 * 120.00261 * 245.80330 * 12 2 1 15 15 O 1.21279 * 120.00500 * 185.57588 * 14 12 2 16 16 C 1.50710 * 119.99676 * 5.57365 * 14 12 2 17 17 C 1.52997 * 109.44353 * 281.55530 * 16 14 12 18 18 O 1.42895 * 109.43108 * 41.44860 * 16 14 12 19 19 C 1.36005 * 117.00706 * 165.52779 * 18 16 14 20 20 C 1.38441 * 120.43445 * 148.98807 * 19 18 16 21 21 C 1.38293 * 119.91688 * 178.40441 * 20 19 18 22 22 C 1.38287 * 120.23154 * 0.02562 * 21 20 19 23 23 C 1.38270 * 120.17358 * 0.32791 * 22 21 20 24 24 C 1.38522 * 119.88226 * 359.97438 * 23 22 21 25 25 N 1.40155 * 120.65433 * 179.78746 * 24 23 22 26 26 C 1.34951 * 119.23773 * 190.96400 * 25 24 23 27 27 O 1.21295 * 120.14498 * 185.76010 * 26 25 24 28 28 H 1.08997 * 109.46903 * 299.99346 * 1 2 3 29 29 H 1.09000 * 109.46910 * 60.00202 * 1 2 3 30 30 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 31 31 H 0.97007 * 120.00584 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47163 * 271.82606 * 13 12 2 33 33 H 1.09005 * 109.47192 * 31.82441 * 13 12 2 34 34 H 1.08994 * 109.47290 * 151.82246 * 13 12 2 35 35 H 1.09005 * 109.46872 * 300.06452 * 17 16 14 36 36 H 1.09004 * 109.47443 * 60.06375 * 17 16 14 37 37 H 1.08994 * 109.46675 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.04023 * 358.37690 * 20 19 18 39 39 H 1.07999 * 119.88612 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.91379 * 180.29406 * 22 21 20 41 41 H 1.08001 * 120.05602 * 179.70342 * 23 22 21 42 42 H 0.97002 * 120.38069 * 10.98620 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.7723 -2.1249 1.3657 14 6 2.6941 -0.0067 2.1406 15 8 3.1857 -0.5949 3.0803 16 6 2.8388 1.4893 2.0288 17 6 3.9331 1.8206 1.0122 18 8 1.6005 2.0556 1.5954 19 6 1.4562 3.4013 1.7299 20 6 0.6763 4.1157 0.8366 21 6 0.5101 5.4785 1.0026 22 6 1.1209 6.1310 2.0578 23 6 1.9073 5.4253 2.9497 24 6 2.0828 4.0611 2.7855 25 7 2.8800 3.3307 3.6774 26 6 3.2147 2.0593 3.3729 27 8 3.8146 1.3780 4.1773 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.7094 1.1619 -3.4844 32 1 0.8123 -2.2728 1.8600 33 1 1.7565 -2.6088 0.3890 34 1 2.5651 -2.5601 1.9739 35 1 4.8775 1.3865 1.3406 36 1 3.6625 1.4089 0.0399 37 1 4.0384 2.9025 0.9315 38 1 0.1985 3.6093 0.0109 39 1 -0.0981 6.0354 0.3052 40 1 0.9839 7.1946 2.1853 41 1 2.3873 5.9376 3.7704 42 1 3.1873 3.7343 4.5042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339290268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:37 Heat of formation + Delta-G solvation = -72.184342 kcal Electronic energy + Delta-G solvation = -28629.797737 eV Core-core repulsion = 24768.488864 eV Total energy + Delta-G solvation = -3861.308874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03838 -40.74973 -39.88616 -38.52502 -37.31372 -36.16955 -34.53651 -33.40971 -31.25863 -30.99515 -29.98467 -28.25212 -27.19792 -26.37307 -24.68260 -23.79089 -23.28700 -21.48416 -20.32361 -19.70391 -18.93466 -18.41015 -17.84600 -17.34745 -17.13237 -16.87352 -16.45077 -16.28886 -15.98838 -15.73786 -15.38245 -15.01582 -14.80525 -14.61203 -14.44071 -14.01666 -13.79232 -13.66569 -13.55702 -13.33540 -13.08201 -12.92294 -12.78001 -12.74081 -12.67385 -12.41785 -12.13393 -12.07363 -11.98004 -11.85422 -11.31189 -11.07127 -10.68753 -10.39931 -9.60179 -9.43488 -8.92938 -8.08448 -6.21826 0.06262 0.35705 1.05084 1.37713 1.46704 1.48996 1.50856 1.55155 2.04469 2.36541 2.47703 2.75047 2.85955 3.20371 3.36107 3.53416 3.63899 4.11426 4.24698 4.32713 4.40382 4.45794 4.49950 4.61338 4.64094 4.76093 4.86228 4.90398 4.94731 5.06291 5.10834 5.21029 5.26023 5.40376 5.54633 5.60028 5.60654 5.70105 5.77727 5.80449 6.00379 6.21463 6.31594 6.57742 6.68294 6.83041 7.11002 7.47403 8.94737 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.005977 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.645613 B = 4683.154235 C = 6068.332687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.253 3.747 3 H 0.073 0.927 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.035 3.965 7 N -0.899 5.899 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.579 5.579 13 C 0.089 3.911 14 C 0.518 3.482 15 O -0.556 6.556 16 C 0.095 3.905 17 C -0.162 4.162 18 O -0.289 6.289 19 C 0.046 3.954 20 C -0.114 4.114 21 C -0.104 4.104 22 C -0.102 4.102 23 C -0.116 4.116 24 C 0.073 3.927 25 N -0.644 5.644 26 C 0.503 3.497 27 O -0.507 6.507 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 13.448 5.698 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.153 3.847 3 H 0.090 0.910 4 C -0.586 4.586 5 H 0.072 0.928 6 C -0.167 4.167 7 N -0.536 5.536 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.309 5.309 13 C -0.054 4.054 14 C 0.302 3.698 15 O -0.436 6.436 16 C 0.050 3.950 17 C -0.220 4.220 18 O -0.204 6.204 19 C 0.000 4.000 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.136 4.136 24 C -0.022 4.022 25 N -0.293 5.293 26 C 0.287 3.713 27 O -0.380 6.380 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.176 0.824 40 H 0.188 0.812 41 H 0.182 0.818 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.548 12.581 6.267 14.066 hybrid contribution 0.464 -0.770 -0.548 1.053 sum -0.084 11.811 5.719 13.123 Atomic orbital electron populations 1.21865 0.97752 0.98960 1.00228 1.19258 0.91844 0.93939 0.79669 0.90995 1.21498 1.32439 1.13458 0.91237 0.92828 1.25399 0.94929 0.95540 1.00811 1.69939 1.36265 1.23014 1.24431 0.85759 0.78533 0.78851 0.79324 1.20113 1.20707 1.20334 1.48288 1.51738 1.10044 1.20815 1.21594 1.00631 0.80492 1.02659 1.19668 0.79655 0.87606 0.82835 1.90731 1.49567 1.69378 1.33956 1.21808 0.87610 0.92520 0.93090 1.22343 0.96571 1.04169 0.98914 1.86620 1.33504 1.19632 1.80664 1.19129 1.01827 0.82693 0.96319 1.20799 1.00086 0.94880 0.97593 1.21369 0.99826 0.92003 0.99063 1.21410 0.95682 1.01692 0.93269 1.20987 1.01213 0.89190 1.02248 1.18284 0.98088 0.93693 0.92110 1.43441 1.50223 1.12077 1.23514 1.20678 0.79504 0.82303 0.88789 1.90833 1.39570 1.58179 1.49415 0.96155 0.90436 0.95598 0.92465 0.92545 0.89915 0.91749 0.89993 0.89134 0.89073 0.85466 0.82356 0.81221 0.81843 0.73048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.87 71.98 0.64 -5.34 16 2 C 0.25 11.94 1.36 44.25 0.06 12.00 16 3 H 0.07 3.51 3.49 -2.39 -0.01 3.50 16 4 C -0.55 -27.58 7.98 25.60 0.20 -27.37 16 5 H 0.05 2.73 6.90 -2.91 -0.02 2.71 16 6 C 0.03 1.73 5.30 84.65 0.45 2.18 16 7 N -0.90 -45.58 11.32 21.45 0.24 -45.33 16 8 Si 0.95 40.35 29.54 68.60 2.03 42.37 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.58 -26.27 2.75 -826.79 -2.28 -28.55 16 13 C 0.09 3.58 9.73 127.77 1.24 4.83 16 14 C 0.52 24.00 6.63 87.66 0.58 24.58 16 15 O -0.56 -28.39 14.10 19.66 0.28 -28.11 16 16 C 0.09 3.81 0.66 -12.27 -0.01 3.81 16 17 C -0.16 -5.94 8.28 71.98 0.60 -5.34 16 18 O -0.29 -11.37 6.33 -93.60 -0.59 -11.97 16 19 C 0.05 1.48 5.91 22.59 0.13 1.61 16 20 C -0.11 -3.22 9.99 22.33 0.22 -3.00 16 21 C -0.10 -1.98 10.04 22.29 0.22 -1.76 16 22 C -0.10 -1.50 10.04 22.29 0.22 -1.28 16 23 C -0.12 -2.01 9.94 22.35 0.22 -1.78 16 24 C 0.07 1.91 6.57 38.15 0.25 2.16 16 25 N -0.64 -18.04 5.46 -302.93 -1.65 -19.69 16 26 C 0.50 19.07 6.89 87.65 0.60 19.68 16 27 O -0.51 -22.59 15.52 19.61 0.30 -22.29 16 28 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 29 H 0.08 3.82 6.07 -2.39 -0.01 3.81 16 30 H 0.02 1.14 7.82 -2.39 -0.02 1.12 16 31 H 0.27 12.90 8.31 -92.70 -0.77 12.13 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 3.29 6.57 -2.38 -0.02 3.27 16 34 H 0.06 2.56 7.30 -2.39 -0.02 2.54 16 35 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.09 3.71 6.28 -2.39 -0.01 3.70 16 37 H 0.09 2.86 7.84 -2.39 -0.02 2.84 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.43 9.15 8.87 -92.71 -0.82 8.33 16 Total: -1.00 -67.15 340.23 4.22 -62.93 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.25 Total: 25.66 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 5.64 Total: 24.97 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.69 Total: -93.57 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -0.01 Total: -62.36 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -67.15 4.22 -62.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.252 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds