Wall clock time and date at job start Tue Mar 31 2020 12:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47203 * 2 1 4 4 C 1.50701 * 109.47077 * 119.99760 * 2 1 3 5 5 H 1.07997 * 119.99890 * 120.00023 * 4 2 1 6 6 C 1.37878 * 120.00096 * 299.99920 * 4 2 1 7 7 N 1.31514 * 119.99792 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47070 * 90.00274 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99851 * 8 6 4 11 11 H 1.48495 * 109.47365 * 329.99983 * 8 6 4 12 12 N 1.46499 * 109.47038 * 239.99991 * 2 1 3 13 13 C 1.46501 * 119.99638 * 305.61635 * 12 2 1 14 14 C 1.34772 * 119.99965 * 125.61805 * 12 2 1 15 15 O 1.21290 * 119.99693 * 185.65746 * 14 12 2 16 16 C 1.50695 * 120.00234 * 5.66104 * 14 12 2 17 17 C 1.53005 * 109.44362 * 281.85042 * 16 14 12 18 18 O 1.42931 * 109.44717 * 41.75451 * 16 14 12 19 19 C 1.36002 * 116.99494 * 165.56886 * 18 16 14 20 20 C 1.38446 * 120.43702 * 148.96140 * 19 18 16 21 21 C 1.38289 * 119.91377 * 178.39612 * 20 19 18 22 22 C 1.38281 * 120.23807 * 359.97438 * 21 20 19 23 23 C 1.38270 * 120.17139 * 0.33066 * 22 21 20 24 24 C 1.38524 * 119.88238 * 359.97438 * 23 22 21 25 25 N 1.40154 * 120.65106 * 179.78817 * 24 23 22 26 26 C 1.34960 * 119.23393 * 190.96442 * 25 24 23 27 27 O 1.21295 * 120.14487 * 185.71749 * 26 25 24 28 28 H 1.09001 * 109.47124 * 300.00471 * 1 2 3 29 29 H 1.08995 * 109.47213 * 59.99850 * 1 2 3 30 30 H 1.08990 * 109.47138 * 180.02562 * 1 2 3 31 31 H 0.97007 * 120.00058 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47149 * 264.79359 * 13 12 2 33 33 H 1.08994 * 109.47369 * 24.79881 * 13 12 2 34 34 H 1.08999 * 109.47037 * 144.79292 * 13 12 2 35 35 H 1.09000 * 109.47057 * 300.06536 * 17 16 14 36 36 H 1.09001 * 109.46675 * 60.06470 * 17 16 14 37 37 H 1.08998 * 109.47305 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.03889 * 358.38227 * 20 19 18 39 39 H 1.08004 * 119.88095 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.91178 * 180.31655 * 22 21 20 41 41 H 1.08001 * 120.05908 * 179.71352 * 23 22 21 42 42 H 0.96991 * 120.38546 * 10.98016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4124 10 1 1.3432 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.5659 -2.0523 -1.4918 14 6 2.8838 -0.0733 -2.0246 15 8 3.2086 -0.6028 -3.0663 16 6 3.4480 1.2747 -1.6565 17 6 2.4041 2.3576 -1.9370 18 8 3.7838 1.2868 -0.2672 19 6 4.5752 2.3037 0.1677 20 6 4.4497 2.7871 1.4590 21 6 5.2826 3.7989 1.9006 22 6 6.2412 4.3297 1.0571 23 6 6.3682 3.8563 -0.2358 24 6 5.5330 2.8473 -0.6864 25 7 5.6447 2.3584 -1.9952 26 6 4.6847 1.5419 -2.4780 27 8 4.8149 1.0266 -3.5683 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.7090 1.1616 3.4844 32 1 2.2905 -2.7682 -1.1040 33 1 0.5979 -2.2238 -1.0209 34 1 1.4724 -2.1779 -2.5704 35 1 2.1456 2.3474 -2.9959 36 1 1.5110 2.1638 -1.3430 37 1 2.8119 3.3329 -1.6714 38 1 3.7022 2.3746 2.1204 39 1 5.1839 4.1759 2.9079 40 1 6.8922 5.1162 1.4091 41 1 7.1145 4.2754 -0.8944 42 1 6.4033 2.6039 -2.5475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339290269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:41 Heat of formation + Delta-G solvation = -50.797602 kcal Electronic energy + Delta-G solvation = -28832.859727 eV Core-core repulsion = 24972.478252 eV Total energy + Delta-G solvation = -3860.381475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60398 -39.24172 -38.38287 -37.15383 -35.54568 -34.85986 -32.62227 -31.98815 -30.11057 -29.17900 -28.78816 -26.73588 -25.21859 -24.91964 -23.36714 -22.62880 -21.52159 -19.99110 -18.91848 -18.23003 -17.53101 -16.59834 -16.35332 -15.99167 -15.54856 -15.32574 -14.91815 -14.56222 -14.49956 -14.31714 -14.04557 -13.64303 -13.57877 -13.07561 -12.86962 -12.60890 -12.32750 -12.09854 -12.08318 -11.78611 -11.60142 -11.41314 -11.27992 -11.11843 -10.95443 -10.78659 -10.68719 -10.61465 -10.21183 -10.17109 -9.75809 -9.32435 -8.97594 -8.50616 -8.41316 -7.71910 -7.65614 -6.11015 -4.15491 1.25772 1.46345 2.46519 2.83517 2.99553 3.24337 3.31512 3.36203 3.62937 3.80286 3.94161 4.20617 4.36369 4.75577 4.95198 4.98466 5.07378 5.20247 5.32050 5.45856 5.55862 5.66113 5.72129 6.01182 6.03328 6.16048 6.20736 6.23346 6.31784 6.42824 6.60595 6.62366 6.69795 6.77998 6.86411 6.90941 6.96700 7.16266 7.42621 7.61982 7.70614 7.90186 8.01809 8.16395 8.35565 8.74489 8.92005 9.49154 10.93862 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.007722 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.355199 B = 3625.047065 C = 5471.795833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 H 0.077 0.923 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.576 5.576 13 C 0.095 3.905 14 C 0.528 3.472 15 O -0.527 6.527 16 C 0.091 3.909 17 C -0.171 4.171 18 O -0.248 6.248 19 C 0.086 3.914 20 C -0.093 4.093 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.133 4.133 24 C 0.087 3.913 25 N -0.663 5.663 26 C 0.503 3.497 27 O -0.469 6.469 28 H 0.098 0.902 29 H 0.012 0.988 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 8.280 -1.999 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.144 3.856 3 H 0.095 0.905 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.530 5.530 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.306 5.306 13 C -0.048 4.048 14 C 0.311 3.689 15 O -0.405 6.405 16 C 0.046 3.954 17 C -0.228 4.228 18 O -0.161 6.161 19 C 0.039 3.961 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.154 4.154 24 C -0.009 4.009 25 N -0.311 5.311 26 C 0.287 3.713 27 O -0.339 6.339 28 H 0.116 0.884 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.387 7.524 -2.875 9.690 hybrid contribution 0.817 -0.179 0.748 1.122 sum 6.204 7.345 -2.126 9.847 Atomic orbital electron populations 1.22198 0.98154 1.00029 1.00946 1.19454 0.90980 0.94529 0.80624 0.90547 1.21233 1.30841 1.12565 0.89948 0.92418 1.24759 0.95009 0.95012 0.98508 1.69849 1.36774 1.22820 1.23571 0.86630 0.78646 0.80274 0.82711 1.20562 1.21272 1.20071 1.48190 1.42419 1.15101 1.24938 1.21454 1.00128 0.82966 1.00256 1.19159 0.80781 0.84530 0.84438 1.90769 1.60915 1.64555 1.24249 1.22001 0.93433 0.98623 0.81340 1.22436 0.99488 0.96797 1.04124 1.86903 1.64459 1.43267 1.21499 1.18804 0.91802 0.91384 0.94105 1.20840 1.00472 0.95682 0.94182 1.20999 0.95648 0.96741 1.00037 1.20863 0.99246 1.00649 0.93105 1.20477 1.00524 0.97154 0.97276 1.18126 0.98952 0.98766 0.85052 1.43678 1.25480 1.48672 1.13222 1.20839 0.84649 0.78440 0.87372 1.90850 1.77282 1.45517 1.20207 0.88399 0.96932 0.94665 0.92825 0.93340 0.90592 0.92275 0.90179 0.88124 0.90852 0.83088 0.85271 0.85662 0.85595 0.74957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.85 37.16 0.33 -3.01 16 2 C 0.24 5.52 1.36 -69.08 -0.09 5.42 16 3 H 0.08 1.78 3.49 -51.93 -0.18 1.59 16 4 C -0.51 -12.62 8.17 -34.44 -0.28 -12.90 16 5 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -22.09 11.32 55.43 0.63 -21.46 16 8 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.58 -12.53 2.75 -175.26 -0.48 -13.01 16 13 C 0.09 1.84 9.88 59.85 0.59 2.43 16 14 C 0.53 11.77 6.63 -10.99 -0.07 11.70 16 15 O -0.53 -12.92 14.20 -18.19 -0.26 -13.18 16 16 C 0.09 1.80 0.66 -92.85 -0.06 1.74 16 17 C -0.17 -2.87 8.29 37.16 0.31 -2.56 16 18 O -0.25 -5.08 6.67 -19.75 -0.13 -5.21 16 19 C 0.09 1.52 5.91 -39.08 -0.23 1.29 16 20 C -0.09 -1.52 9.99 -39.49 -0.39 -1.92 16 21 C -0.12 -1.47 10.04 -39.55 -0.40 -1.87 16 22 C -0.12 -1.33 10.04 -39.55 -0.40 -1.73 16 23 C -0.13 -1.58 9.94 -39.46 -0.39 -1.97 16 24 C 0.09 1.30 6.57 -83.53 -0.55 0.75 16 25 N -0.66 -10.12 5.46 -9.68 -0.05 -10.17 16 26 C 0.50 9.62 6.90 -10.83 -0.07 9.55 16 27 O -0.47 -10.30 15.51 -18.19 -0.28 -10.58 16 28 H 0.10 2.30 6.07 -51.93 -0.32 1.98 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.73 6.47 -51.93 -0.34 0.39 16 31 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 34 H 0.06 1.09 7.51 -51.93 -0.39 0.70 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 1.76 6.25 -51.93 -0.32 1.43 16 37 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 38 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 39 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.41 5.06 8.87 -40.82 -0.36 4.70 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -30.08 340.72 -7.42 -37.49 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.14 Total: 7.64 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.81 Total: 8.51 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.09 Total: -44.64 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.67 Total: -28.98 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.08 -7.42 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.303 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds