Wall clock time and date at job start Tue Mar 31 2020 12:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47203 * 2 1 4 4 C 1.50701 * 109.47077 * 119.99760 * 2 1 3 5 5 H 1.07997 * 119.99890 * 120.00023 * 4 2 1 6 6 C 1.37878 * 120.00096 * 299.99920 * 4 2 1 7 7 N 1.31514 * 119.99792 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47070 * 90.00274 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99851 * 8 6 4 11 11 H 1.48495 * 109.47365 * 329.99983 * 8 6 4 12 12 N 1.46499 * 109.47038 * 239.99991 * 2 1 3 13 13 C 1.46501 * 119.99638 * 305.61635 * 12 2 1 14 14 C 1.34772 * 119.99965 * 125.61805 * 12 2 1 15 15 O 1.21290 * 119.99693 * 185.65746 * 14 12 2 16 16 C 1.50695 * 120.00234 * 5.66104 * 14 12 2 17 17 C 1.53005 * 109.44362 * 281.85042 * 16 14 12 18 18 O 1.42931 * 109.44717 * 41.75451 * 16 14 12 19 19 C 1.36002 * 116.99494 * 165.56886 * 18 16 14 20 20 C 1.38446 * 120.43702 * 148.96140 * 19 18 16 21 21 C 1.38289 * 119.91377 * 178.39612 * 20 19 18 22 22 C 1.38281 * 120.23807 * 359.97438 * 21 20 19 23 23 C 1.38270 * 120.17139 * 0.33066 * 22 21 20 24 24 C 1.38524 * 119.88238 * 359.97438 * 23 22 21 25 25 N 1.40154 * 120.65106 * 179.78817 * 24 23 22 26 26 C 1.34960 * 119.23393 * 190.96442 * 25 24 23 27 27 O 1.21295 * 120.14487 * 185.71749 * 26 25 24 28 28 H 1.09001 * 109.47124 * 300.00471 * 1 2 3 29 29 H 1.08995 * 109.47213 * 59.99850 * 1 2 3 30 30 H 1.08990 * 109.47138 * 180.02562 * 1 2 3 31 31 H 0.97007 * 120.00058 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47149 * 264.79359 * 13 12 2 33 33 H 1.08994 * 109.47369 * 24.79881 * 13 12 2 34 34 H 1.08999 * 109.47037 * 144.79292 * 13 12 2 35 35 H 1.09000 * 109.47057 * 300.06536 * 17 16 14 36 36 H 1.09001 * 109.46675 * 60.06470 * 17 16 14 37 37 H 1.08998 * 109.47305 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.03889 * 358.38227 * 20 19 18 39 39 H 1.08004 * 119.88095 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.91178 * 180.31655 * 22 21 20 41 41 H 1.08001 * 120.05908 * 179.71352 * 23 22 21 42 42 H 0.96991 * 120.38546 * 10.98016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4124 10 1 1.3432 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.5659 -2.0523 -1.4918 14 6 2.8838 -0.0733 -2.0246 15 8 3.2086 -0.6028 -3.0663 16 6 3.4480 1.2747 -1.6565 17 6 2.4041 2.3576 -1.9370 18 8 3.7838 1.2868 -0.2672 19 6 4.5752 2.3037 0.1677 20 6 4.4497 2.7871 1.4590 21 6 5.2826 3.7989 1.9006 22 6 6.2412 4.3297 1.0571 23 6 6.3682 3.8563 -0.2358 24 6 5.5330 2.8473 -0.6864 25 7 5.6447 2.3584 -1.9952 26 6 4.6847 1.5419 -2.4780 27 8 4.8149 1.0266 -3.5683 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.7090 1.1616 3.4844 32 1 2.2905 -2.7682 -1.1040 33 1 0.5979 -2.2238 -1.0209 34 1 1.4724 -2.1779 -2.5704 35 1 2.1456 2.3474 -2.9959 36 1 1.5110 2.1638 -1.3430 37 1 2.8119 3.3329 -1.6714 38 1 3.7022 2.3746 2.1204 39 1 5.1839 4.1759 2.9079 40 1 6.8922 5.1162 1.4091 41 1 7.1145 4.2754 -0.8944 42 1 6.4033 2.6039 -2.5475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339290269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:41 Heat of formation + Delta-G solvation = -68.807987 kcal Electronic energy + Delta-G solvation = -28833.640716 eV Core-core repulsion = 24972.478252 eV Total energy + Delta-G solvation = -3861.162464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.99400 -40.73810 -39.85368 -38.48081 -37.31610 -36.14978 -34.49753 -33.38006 -31.23691 -30.97361 -29.96368 -28.32843 -27.11720 -26.35315 -24.64801 -23.76142 -23.25059 -21.44073 -20.27131 -19.67731 -18.91941 -18.42211 -17.81312 -17.36730 -17.02285 -16.86777 -16.40543 -16.23593 -16.02040 -15.71565 -15.35453 -15.13492 -14.81193 -14.65950 -14.35123 -13.99592 -13.77452 -13.70891 -13.53897 -13.30457 -13.04237 -12.91921 -12.87691 -12.68791 -12.55365 -12.41306 -12.15799 -12.03604 -11.94882 -11.84411 -11.25468 -11.13886 -10.65892 -10.34376 -9.58275 -9.43912 -8.90290 -8.02242 -6.11376 0.07773 0.37790 1.05436 1.39893 1.43668 1.47886 1.52497 1.55204 2.12245 2.37169 2.51871 2.75163 2.87842 3.26199 3.37408 3.54175 3.65692 4.12169 4.25496 4.32263 4.39805 4.43417 4.49436 4.61079 4.61646 4.74864 4.80760 4.90088 4.94269 4.98422 5.08327 5.15881 5.27083 5.41837 5.56076 5.61040 5.62123 5.71849 5.80938 5.82816 6.05998 6.28728 6.35845 6.57509 6.70031 6.87995 7.12439 7.54879 9.01198 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.007722 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.355199 B = 3625.047065 C = 5471.795833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.250 3.750 3 H 0.073 0.927 4 C -0.520 4.520 5 H 0.037 0.963 6 C 0.041 3.959 7 N -0.900 5.900 8 Si 0.935 3.065 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.580 5.580 13 C 0.092 3.908 14 C 0.519 3.481 15 O -0.556 6.556 16 C 0.088 3.912 17 C -0.161 4.161 18 O -0.276 6.276 19 C 0.052 3.948 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.103 4.103 23 C -0.115 4.115 24 C 0.071 3.929 25 N -0.643 5.643 26 C 0.502 3.498 27 O -0.508 6.508 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 10.631 -1.146 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.150 3.850 3 H 0.090 0.910 4 C -0.559 4.559 5 H 0.055 0.945 6 C -0.159 4.159 7 N -0.539 5.539 8 Si 0.762 3.238 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.309 5.309 13 C -0.050 4.050 14 C 0.303 3.697 15 O -0.436 6.436 16 C 0.043 3.957 17 C -0.219 4.219 18 O -0.190 6.190 19 C 0.006 3.994 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.024 4.024 25 N -0.292 5.292 26 C 0.286 3.714 27 O -0.381 6.381 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.188 0.812 41 H 0.183 0.817 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.069 9.910 -1.982 12.334 hybrid contribution 0.381 -0.827 0.600 1.091 sum 7.450 9.084 -1.381 11.829 Atomic orbital electron populations 1.22050 0.97348 1.00158 1.00816 1.19310 0.91407 0.94211 0.80112 0.90955 1.21273 1.31051 1.12241 0.91313 0.94484 1.25182 0.95156 0.95517 1.00081 1.69910 1.36864 1.23120 1.24016 0.85927 0.78320 0.78942 0.80590 1.20440 1.20603 1.20808 1.48278 1.42341 1.15762 1.24559 1.21556 1.00535 0.82031 1.00878 1.19656 0.80453 0.85534 0.84035 1.90734 1.61781 1.65755 1.25360 1.21907 0.94474 0.97636 0.81728 1.22368 0.98389 0.96811 1.04323 1.86822 1.65690 1.45065 1.21467 1.19105 0.93021 0.92088 0.95209 1.20761 1.01492 0.97596 0.93644 1.21333 0.94727 0.95014 1.01477 1.21376 0.98250 1.00384 0.92117 1.20978 0.99479 0.94962 0.98069 1.18272 0.99639 1.00059 0.84395 1.43424 1.24885 1.47384 1.13522 1.20760 0.85171 0.78703 0.86752 1.90825 1.78175 1.47415 1.21665 0.90134 0.95296 0.94360 0.92651 0.93729 0.89379 0.91500 0.89434 0.89150 0.89038 0.86336 0.82831 0.81159 0.81656 0.73085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 8.85 71.98 0.64 -5.68 16 2 C 0.25 11.57 1.36 44.25 0.06 11.63 16 3 H 0.07 3.47 3.49 -2.39 -0.01 3.46 16 4 C -0.52 -26.56 8.17 25.60 0.21 -26.35 16 5 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16 6 C 0.04 2.06 5.30 84.65 0.45 2.51 16 7 N -0.90 -45.08 11.32 21.45 0.24 -44.84 16 8 Si 0.93 41.02 29.54 68.60 2.03 43.05 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.58 -25.91 2.75 -826.80 -2.28 -28.19 16 13 C 0.09 3.66 9.88 127.77 1.26 4.92 16 14 C 0.52 23.87 6.63 87.66 0.58 24.45 16 15 O -0.56 -28.17 14.20 19.63 0.28 -27.89 16 16 C 0.09 3.54 0.66 -12.24 -0.01 3.53 16 17 C -0.16 -5.47 8.29 71.98 0.60 -4.87 16 18 O -0.28 -11.63 6.67 -93.57 -0.62 -12.26 16 19 C 0.05 1.82 5.91 22.59 0.13 1.95 16 20 C -0.12 -3.76 9.99 22.33 0.22 -3.54 16 21 C -0.11 -2.41 10.04 22.29 0.22 -2.18 16 22 C -0.10 -1.75 10.04 22.29 0.22 -1.53 16 23 C -0.11 -2.18 9.94 22.35 0.22 -1.96 16 24 C 0.07 2.00 6.57 38.15 0.25 2.25 16 25 N -0.64 -18.75 5.46 -302.82 -1.65 -20.41 16 26 C 0.50 19.31 6.90 87.68 0.60 19.92 16 27 O -0.51 -22.72 15.51 19.62 0.30 -22.41 16 28 H 0.08 3.81 6.07 -2.39 -0.01 3.80 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.59 6.47 -2.39 -0.02 1.58 16 31 H 0.26 12.68 8.31 -92.70 -0.77 11.91 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 3.21 6.14 -2.39 -0.01 3.20 16 34 H 0.07 2.52 7.51 -2.39 -0.02 2.50 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.09 3.22 6.25 -2.39 -0.01 3.21 16 37 H 0.09 2.70 7.84 -2.39 -0.02 2.68 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.43 9.56 8.87 -92.71 -0.82 8.74 16 Total: -1.00 -67.52 340.72 4.22 -63.31 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.25 Total: 24.59 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 5.67 Total: 25.05 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -3.69 Total: -93.43 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.04 Total: -62.56 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -67.52 4.22 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.501 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds