Wall clock time and date at job start Tue Mar 31 2020 12:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46994 * 2 1 4 4 C 1.50698 * 109.47142 * 240.00502 * 2 1 3 5 5 H 1.08003 * 120.00127 * 240.00398 * 4 2 1 6 6 C 1.37878 * 120.00424 * 59.99495 * 4 2 1 7 7 N 1.31519 * 119.99427 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00520 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46673 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47303 * 119.99801 * 8 6 4 11 11 H 1.48493 * 109.47140 * 240.00275 * 8 6 4 12 12 N 1.46499 * 109.47514 * 120.00057 * 2 1 3 13 13 C 1.46501 * 119.99712 * 59.99718 * 12 2 1 14 14 C 1.34775 * 120.00201 * 239.99844 * 12 2 1 15 15 O 1.21277 * 119.99919 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99843 * 179.97438 * 14 12 2 17 17 C 1.52995 * 109.43749 * 85.08634 * 16 14 12 18 18 O 1.42930 * 109.40603 * 325.18569 * 16 14 12 19 19 C 1.36004 * 116.99074 * 285.37557 * 18 16 14 20 20 C 1.38444 * 120.43715 * 148.75676 * 19 18 16 21 21 C 1.38307 * 119.89666 * 178.54612 * 20 19 18 22 22 C 1.38270 * 120.23720 * 0.26695 * 21 20 19 23 23 C 1.38267 * 120.19413 * 359.69613 * 22 21 20 24 24 C 1.38572 * 119.84342 * 0.55220 * 23 22 21 25 25 N 1.40152 * 120.54982 * 178.85739 * 24 23 22 26 26 C 1.34957 * 119.21002 * 191.16977 * 25 24 23 27 27 O 1.21295 * 120.13190 * 186.02905 * 26 25 24 28 28 H 1.08995 * 109.47466 * 59.99305 * 1 2 3 29 29 H 1.08998 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46690 * 299.99660 * 1 2 3 31 31 H 0.97005 * 119.99706 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47454 * 270.00443 * 13 12 2 33 33 H 1.09003 * 109.46921 * 30.00631 * 13 12 2 34 34 H 1.09005 * 109.46690 * 150.00210 * 13 12 2 35 35 H 1.08999 * 109.47359 * 179.91071 * 17 16 14 36 36 H 1.09001 * 109.47557 * 299.91606 * 17 16 14 37 37 H 1.09006 * 109.47101 * 59.91462 * 17 16 14 38 38 H 1.08005 * 120.05509 * 358.57000 * 20 19 18 39 39 H 1.08002 * 119.87819 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.90621 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.07976 * 180.25526 * 23 22 21 42 42 H 0.97001 * 120.39437 * 11.15291 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.1465 -2.2867 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1464 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2952 -0.7459 3.3139 17 6 4.5802 -1.5044 2.9756 18 8 2.3030 -1.6696 3.7670 19 6 1.2138 -1.1478 4.3924 20 6 -0.0177 -1.7729 4.2943 21 6 -1.1114 -1.2492 4.9594 22 6 -0.9808 -0.1004 5.7177 23 6 0.2460 0.5290 5.8209 24 6 1.3445 0.0122 5.1528 25 7 2.5894 0.6515 5.2278 26 6 3.5794 0.2651 4.3959 27 8 4.6935 0.7289 4.5184 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7087 1.1615 -3.4844 32 1 0.7377 -2.1444 1.9992 33 1 1.5296 -2.5968 0.4707 34 1 2.4630 -2.5819 1.9863 35 1 4.9446 -2.0171 3.8658 36 1 4.3754 -2.2354 2.1934 37 1 5.3361 -0.8009 2.6265 38 1 -0.1240 -2.6682 3.6997 39 1 -2.0720 -1.7369 4.8824 40 1 -1.8386 0.3041 6.2345 41 1 0.3468 1.4239 6.4171 42 1 2.7377 1.3633 5.8698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339290270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:45 Heat of formation + Delta-G solvation = -57.587792 kcal Electronic energy + Delta-G solvation = -28468.352493 eV Core-core repulsion = 24607.676573 eV Total energy + Delta-G solvation = -3860.675920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94347 -39.21946 -38.77806 -37.41547 -35.48903 -35.20624 -32.95877 -32.19611 -30.37232 -29.34706 -28.99254 -26.39278 -25.32776 -25.12149 -23.55412 -22.98028 -22.12548 -19.87033 -19.25181 -18.43514 -17.84984 -17.03468 -16.40083 -16.11668 -16.02365 -15.34049 -15.28500 -14.84964 -14.59949 -14.47431 -14.10947 -13.92529 -13.45777 -13.32552 -12.96248 -12.64593 -12.51888 -12.33119 -12.25908 -11.92244 -11.82276 -11.63666 -11.50134 -11.12633 -10.97457 -10.89371 -10.84564 -10.77426 -10.29433 -10.20887 -10.10993 -9.30127 -9.17713 -8.70334 -8.47495 -7.97365 -7.70562 -6.11499 -4.19799 0.99497 1.14663 2.20069 2.70151 2.79746 3.23278 3.24237 3.32554 3.35345 3.56953 3.75067 4.01649 4.35659 4.47537 4.71577 4.78999 4.83959 5.09436 5.15762 5.20351 5.27517 5.56755 5.58450 5.66884 5.81505 5.92023 6.00111 6.07588 6.11418 6.32270 6.43178 6.43474 6.52716 6.69953 6.72034 6.77437 6.99261 7.15735 7.31840 7.43555 7.65593 7.75542 7.94091 8.11795 8.37038 8.66703 8.87590 9.46508 10.94023 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.004923 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.464932 B = 5686.675017 C = 6469.565535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.568 5.568 13 C 0.079 3.921 14 C 0.492 3.508 15 O -0.534 6.534 16 C 0.089 3.911 17 C -0.128 4.128 18 O -0.287 6.287 19 C 0.078 3.922 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.127 4.127 24 C 0.099 3.901 25 N -0.658 5.658 26 C 0.525 3.475 27 O -0.492 6.492 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -6.712 16.612 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.298 5.298 13 C -0.064 4.064 14 C 0.275 3.725 15 O -0.412 6.412 16 C 0.044 3.956 17 C -0.185 4.185 18 O -0.202 6.202 19 C 0.032 3.968 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.148 4.148 24 C 0.003 3.997 25 N -0.305 5.305 26 C 0.310 3.690 27 O -0.364 6.364 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.981 -6.042 16.208 17.552 hybrid contribution 0.249 0.116 -0.541 0.606 sum -2.732 -5.926 15.667 16.971 Atomic orbital electron populations 1.22055 0.97786 0.99557 1.00795 1.19053 0.91143 0.94471 0.79632 0.92010 1.21314 1.31974 1.13095 0.90065 0.91995 1.24896 0.94879 0.94954 0.99014 1.69894 1.36289 1.22561 1.23753 0.86409 0.78605 0.79587 0.82628 1.19724 1.20894 1.20903 1.48185 1.46942 1.12063 1.22584 1.21960 1.00024 0.82532 1.01868 1.20112 0.80883 0.87137 0.84365 1.90740 1.57848 1.16186 1.76476 1.22477 0.91679 0.89475 0.92004 1.21785 0.92034 1.01065 1.03650 1.86399 1.28406 1.32916 1.72437 1.18591 0.88475 0.93968 0.95812 1.20588 0.88797 1.01815 1.00820 1.20983 0.98293 0.96499 0.97409 1.20935 0.96618 0.95808 0.99596 1.20607 0.91280 1.00979 1.01950 1.18088 0.86456 0.94668 1.00532 1.43596 1.10432 1.38340 1.38103 1.20566 0.84442 0.82196 0.81846 1.90751 1.21279 1.54505 1.69828 0.88722 0.94946 0.97106 0.92672 0.93344 0.90377 0.91351 0.90273 0.89388 0.88441 0.84055 0.84878 0.85186 0.85102 0.74539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.99 7.99 -34.44 -0.28 -14.27 16 5 H 0.06 1.61 7.33 -52.48 -0.38 1.23 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.57 -12.20 2.75 -175.27 -0.48 -12.69 16 13 C 0.08 1.36 7.94 59.85 0.48 1.83 16 14 C 0.49 10.69 6.27 -10.99 -0.07 10.62 16 15 O -0.53 -13.83 15.59 5.56 0.09 -13.75 16 16 C 0.09 1.54 0.67 -92.89 -0.06 1.48 16 17 C -0.13 -1.90 8.19 37.16 0.30 -1.59 16 18 O -0.29 -4.33 6.52 -19.75 -0.13 -4.46 16 19 C 0.08 1.11 5.72 -39.10 -0.22 0.89 16 20 C -0.10 -1.19 8.87 -39.48 -0.35 -1.54 16 21 C -0.11 -1.11 10.04 -39.54 -0.40 -1.51 16 22 C -0.11 -1.06 10.04 -39.56 -0.40 -1.45 16 23 C -0.13 -1.39 9.94 -39.45 -0.39 -1.78 16 24 C 0.10 1.36 6.57 -83.53 -0.55 0.81 16 25 N -0.66 -9.60 5.46 -9.70 -0.05 -9.66 16 26 C 0.52 9.28 6.29 -10.86 -0.07 9.21 16 27 O -0.49 -9.64 16.98 5.54 0.09 -9.55 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 30 H 0.01 0.23 8.14 -51.92 -0.42 -0.20 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.05 0.74 5.34 -51.93 -0.28 0.47 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 34 H 0.07 1.02 4.52 -51.93 -0.23 0.79 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.20 6.84 -51.93 -0.36 0.84 16 37 H 0.10 1.55 7.87 -51.93 -0.41 1.14 16 38 H 0.14 1.44 7.10 -52.48 -0.37 1.07 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.42 4.93 8.87 -40.82 -0.36 4.57 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -33.33 339.21 -6.79 -40.12 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.08 Total: 5.73 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.95 Total: 7.63 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.09 Total: -46.59 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.05 Total: -27.76 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.33 -6.79 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.469 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds