Wall clock time and date at job start Tue Mar 31 2020 12:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46994 * 2 1 4 4 C 1.50698 * 109.47142 * 240.00502 * 2 1 3 5 5 H 1.08003 * 120.00127 * 240.00398 * 4 2 1 6 6 C 1.37878 * 120.00424 * 59.99495 * 4 2 1 7 7 N 1.31519 * 119.99427 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00520 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46673 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47303 * 119.99801 * 8 6 4 11 11 H 1.48493 * 109.47140 * 240.00275 * 8 6 4 12 12 N 1.46499 * 109.47514 * 120.00057 * 2 1 3 13 13 C 1.46501 * 119.99712 * 59.99718 * 12 2 1 14 14 C 1.34775 * 120.00201 * 239.99844 * 12 2 1 15 15 O 1.21277 * 119.99919 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99843 * 179.97438 * 14 12 2 17 17 C 1.52995 * 109.43749 * 85.08634 * 16 14 12 18 18 O 1.42930 * 109.40603 * 325.18569 * 16 14 12 19 19 C 1.36004 * 116.99074 * 285.37557 * 18 16 14 20 20 C 1.38444 * 120.43715 * 148.75676 * 19 18 16 21 21 C 1.38307 * 119.89666 * 178.54612 * 20 19 18 22 22 C 1.38270 * 120.23720 * 0.26695 * 21 20 19 23 23 C 1.38267 * 120.19413 * 359.69613 * 22 21 20 24 24 C 1.38572 * 119.84342 * 0.55220 * 23 22 21 25 25 N 1.40152 * 120.54982 * 178.85739 * 24 23 22 26 26 C 1.34957 * 119.21002 * 191.16977 * 25 24 23 27 27 O 1.21295 * 120.13190 * 186.02905 * 26 25 24 28 28 H 1.08995 * 109.47466 * 59.99305 * 1 2 3 29 29 H 1.08998 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46690 * 299.99660 * 1 2 3 31 31 H 0.97005 * 119.99706 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47454 * 270.00443 * 13 12 2 33 33 H 1.09003 * 109.46921 * 30.00631 * 13 12 2 34 34 H 1.09005 * 109.46690 * 150.00210 * 13 12 2 35 35 H 1.08999 * 109.47359 * 179.91071 * 17 16 14 36 36 H 1.09001 * 109.47557 * 299.91606 * 17 16 14 37 37 H 1.09006 * 109.47101 * 59.91462 * 17 16 14 38 38 H 1.08005 * 120.05509 * 358.57000 * 20 19 18 39 39 H 1.08002 * 119.87819 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.90621 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.07976 * 180.25526 * 23 22 21 42 42 H 0.97001 * 120.39437 * 11.15291 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.1465 -2.2867 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1464 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2952 -0.7459 3.3139 17 6 4.5802 -1.5044 2.9756 18 8 2.3030 -1.6696 3.7670 19 6 1.2138 -1.1478 4.3924 20 6 -0.0177 -1.7729 4.2943 21 6 -1.1114 -1.2492 4.9594 22 6 -0.9808 -0.1004 5.7177 23 6 0.2460 0.5290 5.8209 24 6 1.3445 0.0122 5.1528 25 7 2.5894 0.6515 5.2278 26 6 3.5794 0.2651 4.3959 27 8 4.6935 0.7289 4.5184 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7087 1.1615 -3.4844 32 1 0.7377 -2.1444 1.9992 33 1 1.5296 -2.5968 0.4707 34 1 2.4630 -2.5819 1.9863 35 1 4.9446 -2.0171 3.8658 36 1 4.3754 -2.2354 2.1934 37 1 5.3361 -0.8009 2.6265 38 1 -0.1240 -2.6682 3.6997 39 1 -2.0720 -1.7369 4.8824 40 1 -1.8386 0.3041 6.2345 41 1 0.3468 1.4239 6.4171 42 1 2.7377 1.3633 5.8698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339290270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:44 Heat of formation + Delta-G solvation = -80.784114 kcal Electronic energy + Delta-G solvation = -28469.358361 eV Core-core repulsion = 24607.676573 eV Total energy + Delta-G solvation = -3861.681788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17626 -40.61511 -40.09863 -38.59833 -37.31188 -36.33949 -34.81706 -33.54484 -31.39500 -31.11321 -29.98336 -27.88200 -27.33827 -26.49153 -24.78077 -24.01586 -23.50876 -21.49704 -20.39109 -19.76187 -19.06379 -18.57765 -18.17611 -17.62445 -17.27807 -16.86191 -16.53223 -16.33889 -15.88780 -15.75958 -15.40867 -15.11153 -14.92172 -14.51607 -14.37359 -14.24492 -13.86311 -13.68453 -13.53200 -13.47008 -13.21035 -13.01186 -12.79435 -12.73683 -12.72232 -12.57766 -12.24730 -12.13029 -12.09903 -11.91142 -11.45590 -11.21452 -10.80485 -10.54489 -9.67653 -9.46291 -9.01525 -8.16649 -6.33230 -0.00953 0.26782 0.95729 1.25253 1.41963 1.44273 1.54184 1.55550 1.94580 2.17491 2.43086 2.70319 2.81280 3.12238 3.25709 3.49091 3.56133 4.03445 4.24661 4.33674 4.38570 4.41811 4.48568 4.58798 4.70860 4.72421 4.77472 4.85530 4.86701 5.00117 5.02150 5.07066 5.20353 5.40077 5.42409 5.46648 5.52396 5.61370 5.62190 5.67712 5.95796 6.11050 6.13821 6.54405 6.58064 6.72171 7.04366 7.38307 8.88492 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.004923 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.464932 B = 5686.675017 C = 6469.565535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.569 5.569 13 C 0.077 3.923 14 C 0.485 3.515 15 O -0.590 6.590 16 C 0.099 3.901 17 C -0.128 4.128 18 O -0.279 6.279 19 C 0.042 3.958 20 C -0.109 4.109 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.127 4.127 24 C 0.066 3.934 25 N -0.649 5.649 26 C 0.515 3.485 27 O -0.525 6.525 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 -9.004 17.751 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.298 5.298 13 C -0.064 4.064 14 C 0.270 3.730 15 O -0.472 6.472 16 C 0.054 3.946 17 C -0.185 4.185 18 O -0.194 6.194 19 C -0.003 4.003 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.147 4.147 24 C -0.028 4.028 25 N -0.296 5.296 26 C 0.300 3.700 27 O -0.400 6.400 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.174 0.826 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.891 -8.385 17.390 19.916 hybrid contribution 0.648 0.868 -0.789 1.340 sum -4.243 -7.517 16.601 18.711 Atomic orbital electron populations 1.21817 0.96431 1.00427 0.99812 1.18676 0.92085 0.92020 0.81279 0.97695 1.21558 1.32082 1.13190 0.90745 0.91643 1.25738 0.94973 0.95584 1.02044 1.70034 1.37271 1.23870 1.24473 0.85371 0.78246 0.78490 0.78708 1.18639 1.19818 1.21425 1.48143 1.46611 1.13592 1.21412 1.22202 1.01975 0.79893 1.02323 1.20890 0.79943 0.86664 0.85501 1.90697 1.59695 1.18778 1.78010 1.22183 0.92838 0.89783 0.89806 1.21841 0.90566 1.00751 1.05320 1.86385 1.28541 1.31812 1.72632 1.19044 0.88992 0.95284 0.97014 1.20930 0.88290 1.02263 1.01236 1.21471 0.98962 0.96204 0.95801 1.21434 0.96980 0.95211 0.98690 1.21010 0.90943 1.01606 1.01186 1.18444 0.86699 0.95406 1.02296 1.43502 1.10401 1.38208 1.37475 1.20697 0.84655 0.82262 0.82384 1.90720 1.22561 1.55691 1.71018 0.91188 0.92919 0.96520 0.92582 0.91170 0.90803 0.89005 0.87538 0.88118 0.90155 0.82569 0.81547 0.81700 0.82872 0.73409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 8.97 71.98 0.65 -5.39 16 2 C 0.26 13.65 2.64 44.24 0.12 13.77 16 3 H 0.01 0.32 6.90 -2.39 -0.02 0.31 16 4 C -0.54 -28.91 7.99 25.60 0.20 -28.70 16 5 H 0.07 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.57 -24.68 2.75 -826.81 -2.28 -26.95 16 13 C 0.08 2.53 7.94 127.77 1.01 3.54 16 14 C 0.49 21.67 6.27 87.66 0.55 22.22 16 15 O -0.59 -32.36 15.59 -3.02 -0.05 -32.41 16 16 C 0.10 3.46 0.67 -12.26 -0.01 3.46 16 17 C -0.13 -3.75 8.19 71.98 0.59 -3.16 16 18 O -0.28 -8.07 6.52 -93.60 -0.61 -8.68 16 19 C 0.04 1.14 5.72 22.58 0.13 1.27 16 20 C -0.11 -2.23 8.87 22.34 0.20 -2.03 16 21 C -0.11 -1.64 10.04 22.29 0.22 -1.41 16 22 C -0.10 -1.57 10.04 22.28 0.22 -1.34 16 23 C -0.13 -2.44 9.94 22.36 0.22 -2.22 16 24 C 0.07 1.75 6.57 38.15 0.25 2.00 16 25 N -0.65 -18.98 5.46 -302.90 -1.65 -20.63 16 26 C 0.51 18.62 6.29 87.65 0.55 19.17 16 27 O -0.52 -21.39 16.98 -3.08 -0.05 -21.44 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.05 2.24 7.67 -2.39 -0.02 2.22 16 30 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.07 1.98 5.34 -2.39 -0.01 1.97 16 33 H 0.07 2.49 7.02 -2.39 -0.02 2.47 16 34 H 0.09 2.56 4.52 -2.38 -0.01 2.55 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.10 2.63 6.84 -2.39 -0.02 2.61 16 37 H 0.08 2.64 7.87 -2.38 -0.02 2.62 16 38 H 0.16 2.63 7.10 -2.91 -0.02 2.61 16 39 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.43 10.15 8.87 -92.71 -0.82 9.33 16 Total: -1.00 -76.46 339.21 3.24 -73.21 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.25 Total: 22.14 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 5.36 Total: 22.51 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.69 Total: -99.92 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.71 Total: -62.52 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -76.46 3.24 -73.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.570 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds