Wall clock time and date at job start Tue Mar 31 2020 12:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33011 * 1 3 3 C 1.47074 * 119.99756 * 2 1 4 4 O 1.21628 * 119.99775 * 359.97438 * 3 2 1 5 5 N 1.34770 * 119.99992 * 180.02562 * 3 2 1 6 6 C 1.40047 * 119.99955 * 185.44050 * 5 3 2 7 7 C 1.39125 * 119.92325 * 35.82727 * 6 5 3 8 8 C 1.37985 * 120.31911 * 179.97438 * 7 6 5 9 9 C 1.38706 * 120.16623 * 0.02562 * 8 7 6 10 10 O 1.35717 * 120.07498 * 179.97438 * 9 8 7 11 11 C 1.40107 * 119.84420 * 359.97438 * 9 8 7 12 12 C 1.47543 * 120.15599 * 180.02562 * 11 9 8 13 13 O 1.21591 * 119.99877 * 51.07537 * 12 11 9 14 14 N 1.34775 * 120.00017 * 231.07327 * 12 11 9 15 15 C 1.46500 * 120.00241 * 355.44920 * 14 12 11 16 16 C 1.46506 * 120.00067 * 175.44508 * 14 12 11 17 17 H 1.08999 * 109.46747 * 359.97438 * 16 14 12 18 18 C 1.52995 * 109.47141 * 120.00298 * 16 14 12 19 19 C 1.50706 * 109.47062 * 240.00122 * 16 14 12 20 20 H 1.08001 * 119.99756 * 359.97438 * 19 16 14 21 21 C 1.37871 * 119.99826 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00194 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99914 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47066 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47221 * 300.00645 * 23 21 19 26 26 H 1.48504 * 109.46907 * 60.00023 * 23 21 19 27 27 C 1.38414 * 119.92484 * 216.10323 * 6 5 3 28 28 H 1.07995 * 120.00566 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99392 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00566 * 179.97438 * 2 1 3 31 31 H 0.97000 * 119.99987 * 5.43803 * 5 3 2 32 32 H 1.08002 * 119.84317 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.91894 * 180.02562 * 8 7 6 34 34 H 0.96705 * 114.00150 * 270.02463 * 10 9 8 35 35 H 1.08999 * 109.46606 * 275.05779 * 15 14 12 36 36 H 1.09001 * 109.47276 * 35.04920 * 15 14 12 37 37 H 1.08990 * 109.47350 * 155.05862 * 15 14 12 38 38 H 1.09004 * 109.47027 * 180.02562 * 18 16 14 39 39 H 1.08999 * 109.47122 * 299.99968 * 18 16 14 40 40 H 1.09000 * 109.47052 * 59.99716 * 18 16 14 41 41 H 0.96997 * 119.99890 * 179.97438 * 22 21 19 42 42 H 1.08002 * 120.08351 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0654 1.2737 0.0000 4 8 1.4572 2.3270 -0.0005 5 7 3.4131 1.2738 -0.0005 6 6 4.1133 2.4812 0.1145 7 6 3.6140 3.4990 0.9208 8 6 4.2974 4.6917 1.0405 9 6 5.4884 4.8842 0.3561 10 8 6.1589 6.0583 0.4747 11 6 5.9977 3.8639 -0.4579 12 6 7.2642 4.0611 -1.1885 13 8 8.2532 4.4489 -0.5970 14 7 7.3249 3.8112 -2.5115 15 6 6.1632 3.2495 -3.2050 16 6 8.5528 4.1014 -3.2562 17 1 9.3009 4.5113 -2.5777 18 6 9.0851 2.8119 -3.8843 19 6 8.2568 5.1040 -4.3417 20 1 7.2543 5.4864 -4.4649 21 6 9.2658 5.5330 -5.1776 22 7 10.4865 5.0670 -5.0280 23 14 8.8988 6.7752 -6.5236 24 1 10.1437 7.0704 -7.2776 25 1 7.8800 6.2167 -7.4483 26 1 8.3811 8.0267 -5.9144 27 6 5.2977 2.6613 -0.5789 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8702 -0.9352 0.0004 31 1 3.8981 0.4376 -0.0805 32 1 2.6868 3.3549 1.4558 33 1 3.9041 5.4773 1.6686 34 1 5.9048 6.7241 -0.1790 35 1 6.1701 2.1641 -3.1048 36 1 5.2493 3.6491 -2.7653 37 1 6.2057 3.5172 -4.2607 38 1 9.9989 3.0278 -4.4380 39 1 9.2992 2.0868 -3.0992 40 1 8.3368 2.4025 -4.5629 41 1 11.1962 5.3686 -5.6163 42 1 5.6818 1.8722 -1.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346441372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:21 Heat of formation + Delta-G solvation = -50.687916 kcal Electronic energy + Delta-G solvation = -26522.505241 eV Core-core repulsion = 22662.128523 eV Total energy + Delta-G solvation = -3860.376719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.84328 -39.72524 -38.15787 -36.86185 -35.25860 -34.40026 -33.33442 -32.93619 -31.28241 -29.21032 -28.75584 -26.20131 -25.23814 -24.44544 -23.79791 -22.29681 -20.96471 -20.15528 -18.92256 -18.19673 -17.90977 -17.27638 -16.46152 -16.12343 -15.86346 -15.38834 -15.28237 -14.88033 -14.76519 -14.43846 -14.08441 -13.93801 -13.71891 -13.10011 -12.81284 -12.66610 -12.46370 -12.36187 -12.28613 -11.92312 -11.63558 -11.39991 -11.06520 -10.87076 -10.73998 -10.55745 -10.45972 -10.28698 -10.26897 -10.18905 -10.11865 -9.22567 -9.08805 -8.85204 -8.43807 -8.08526 -7.60535 -6.08510 -4.16962 0.80007 1.10118 1.28511 2.75118 2.88589 3.26956 3.29710 3.32534 3.35151 3.68425 3.98366 4.31343 4.35581 4.38385 4.64839 4.79925 4.88908 5.14170 5.20537 5.23404 5.35341 5.38996 5.72304 5.76550 5.82335 5.86020 5.94444 5.97318 6.13807 6.25583 6.35693 6.37964 6.72838 6.75089 6.82591 7.05111 7.10422 7.40816 7.51538 7.69842 7.79781 7.84718 8.00280 8.17780 8.49271 8.80910 9.02499 9.49617 10.96798 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.003311 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.587308 B = 8454.314911 C = 9066.097831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.215 4.215 3 C 0.543 3.457 4 O -0.526 6.526 5 N -0.667 5.667 6 C 0.125 3.875 7 C -0.090 4.090 8 C -0.134 4.134 9 C 0.141 3.859 10 O -0.482 6.482 11 C -0.121 4.121 12 C 0.547 3.453 13 O -0.529 6.529 14 N -0.586 5.586 15 C 0.083 3.917 16 C 0.259 3.741 17 H 0.064 0.936 18 C -0.146 4.146 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.286 1.286 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.098 4.098 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.413 0.587 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.392 0.608 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -10.821 8.935 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.236 4.236 3 C 0.333 3.667 4 O -0.403 6.403 5 N -0.312 5.312 6 C 0.032 3.968 7 C -0.110 4.110 8 C -0.153 4.153 9 C 0.095 3.905 10 O -0.292 6.292 11 C -0.125 4.125 12 C 0.333 3.667 13 O -0.407 6.407 14 N -0.318 5.318 15 C -0.061 4.061 16 C 0.159 3.841 17 H 0.082 0.918 18 C -0.204 4.204 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.119 4.119 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.249 0.751 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.249 0.751 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.030 0.970 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.678 -10.162 9.603 22.538 hybrid contribution -0.181 0.322 -1.325 1.376 sum -17.858 -9.841 8.277 22.006 Atomic orbital electron populations 1.24802 0.95283 1.03575 0.89006 1.22698 0.96470 0.96620 1.07845 1.18836 0.81668 0.90334 0.75902 1.90828 1.67958 1.33163 1.48336 1.43401 1.06438 1.08489 1.72853 1.17479 0.93473 0.87673 0.98194 1.20969 1.00169 0.92625 0.97226 1.21229 0.94014 0.98500 1.01548 1.18419 0.90238 0.87138 0.94724 1.84821 1.64210 1.22414 1.57795 1.20412 0.97066 0.95371 0.99665 1.17983 0.87128 0.79086 0.82506 1.90780 1.36103 1.46291 1.67506 1.48212 1.15951 1.60796 1.06803 1.21705 0.88056 0.96669 0.99647 1.18967 0.81017 0.93180 0.90942 0.91828 1.22083 1.02981 0.96472 0.98898 1.21276 0.95744 1.24600 1.15047 0.92286 1.24885 0.94872 0.96412 0.97521 1.69868 1.00630 1.43284 1.38698 0.86550 0.77601 0.81637 0.81563 1.21151 1.20235 1.20219 1.21036 0.94593 0.97568 0.98668 0.86636 0.86449 0.85207 0.75120 0.84652 0.84606 0.75092 0.94113 0.92724 0.89911 0.88781 0.96986 0.95172 0.92579 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 14.31 28.92 0.41 -0.06 16 2 C -0.22 -1.36 10.03 -37.81 -0.38 -1.74 16 3 C 0.54 5.47 7.48 -12.68 -0.09 5.37 16 4 O -0.53 -7.20 14.08 5.25 0.07 -7.13 16 5 N -0.67 -6.22 5.33 -10.95 -0.06 -6.28 16 6 C 0.13 1.55 6.22 -83.71 -0.52 1.03 16 7 C -0.09 -1.16 8.63 -39.34 -0.34 -1.50 16 8 C -0.13 -1.79 9.97 -39.50 -0.39 -2.18 16 9 C 0.14 2.28 6.70 -38.71 -0.26 2.02 16 10 O -0.48 -8.05 12.60 -26.10 -0.33 -8.38 16 11 C -0.12 -2.09 4.83 -104.87 -0.51 -2.59 16 12 C 0.55 11.89 6.90 -12.47 -0.09 11.81 16 13 O -0.53 -13.78 15.96 -1.96 -0.03 -13.81 16 14 N -0.59 -12.65 2.75 -176.49 -0.49 -13.14 16 15 C 0.08 1.43 8.04 59.85 0.48 1.91 16 16 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 17 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 18 C -0.15 -3.48 8.97 37.15 0.33 -3.15 16 19 C -0.53 -14.17 7.96 -34.44 -0.27 -14.45 16 20 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.10 -1.36 7.75 -38.98 -0.30 -1.66 16 28 H 0.12 0.77 7.49 -52.49 -0.39 0.38 16 29 H 0.12 0.30 8.06 -52.48 -0.42 -0.12 16 30 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.41 2.49 8.81 -40.82 -0.36 2.13 16 32 H 0.14 1.68 6.59 -52.49 -0.35 1.34 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.39 4.97 9.06 45.56 0.41 5.38 16 35 H 0.04 0.60 7.14 -51.93 -0.37 0.23 16 36 H 0.05 0.85 6.34 -51.93 -0.33 0.52 16 37 H 0.08 1.50 7.10 -51.93 -0.37 1.13 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.14 1.69 6.49 -52.49 -0.34 1.35 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -35.48 356.31 -6.44 -41.92 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.38 Total: 7.00 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.20 Total: 2.94 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.08 Total: -43.80 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.29 Total: -29.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.48 -6.44 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346441372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.764 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds