Wall clock time and date at job start Tue Mar 31 2020 12:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33011 * 1 3 3 C 1.47074 * 119.99756 * 2 1 4 4 O 1.21628 * 119.99775 * 359.97438 * 3 2 1 5 5 N 1.34770 * 119.99992 * 180.02562 * 3 2 1 6 6 C 1.40047 * 119.99955 * 185.44050 * 5 3 2 7 7 C 1.39125 * 119.92325 * 35.82727 * 6 5 3 8 8 C 1.37985 * 120.31911 * 179.97438 * 7 6 5 9 9 C 1.38706 * 120.16623 * 0.02562 * 8 7 6 10 10 O 1.35717 * 120.07498 * 179.97438 * 9 8 7 11 11 C 1.40107 * 119.84420 * 359.97438 * 9 8 7 12 12 C 1.47543 * 120.15599 * 180.02562 * 11 9 8 13 13 O 1.21591 * 119.99877 * 51.07537 * 12 11 9 14 14 N 1.34775 * 120.00017 * 231.07327 * 12 11 9 15 15 C 1.46500 * 120.00241 * 355.44920 * 14 12 11 16 16 C 1.46506 * 120.00067 * 175.44508 * 14 12 11 17 17 H 1.08999 * 109.46747 * 359.97438 * 16 14 12 18 18 C 1.52995 * 109.47141 * 120.00298 * 16 14 12 19 19 C 1.50706 * 109.47062 * 240.00122 * 16 14 12 20 20 H 1.08001 * 119.99756 * 359.97438 * 19 16 14 21 21 C 1.37871 * 119.99826 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00194 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99914 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47066 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47221 * 300.00645 * 23 21 19 26 26 H 1.48504 * 109.46907 * 60.00023 * 23 21 19 27 27 C 1.38414 * 119.92484 * 216.10323 * 6 5 3 28 28 H 1.07995 * 120.00566 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99392 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00566 * 179.97438 * 2 1 3 31 31 H 0.97000 * 119.99987 * 5.43803 * 5 3 2 32 32 H 1.08002 * 119.84317 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.91894 * 180.02562 * 8 7 6 34 34 H 0.96705 * 114.00150 * 270.02463 * 10 9 8 35 35 H 1.08999 * 109.46606 * 275.05779 * 15 14 12 36 36 H 1.09001 * 109.47276 * 35.04920 * 15 14 12 37 37 H 1.08990 * 109.47350 * 155.05862 * 15 14 12 38 38 H 1.09004 * 109.47027 * 180.02562 * 18 16 14 39 39 H 1.08999 * 109.47122 * 299.99968 * 18 16 14 40 40 H 1.09000 * 109.47052 * 59.99716 * 18 16 14 41 41 H 0.96997 * 119.99890 * 179.97438 * 22 21 19 42 42 H 1.08002 * 120.08351 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0654 1.2737 0.0000 4 8 1.4572 2.3270 -0.0005 5 7 3.4131 1.2738 -0.0005 6 6 4.1133 2.4812 0.1145 7 6 3.6140 3.4990 0.9208 8 6 4.2974 4.6917 1.0405 9 6 5.4884 4.8842 0.3561 10 8 6.1589 6.0583 0.4747 11 6 5.9977 3.8639 -0.4579 12 6 7.2642 4.0611 -1.1885 13 8 8.2532 4.4489 -0.5970 14 7 7.3249 3.8112 -2.5115 15 6 6.1632 3.2495 -3.2050 16 6 8.5528 4.1014 -3.2562 17 1 9.3009 4.5113 -2.5777 18 6 9.0851 2.8119 -3.8843 19 6 8.2568 5.1040 -4.3417 20 1 7.2543 5.4864 -4.4649 21 6 9.2658 5.5330 -5.1776 22 7 10.4865 5.0670 -5.0280 23 14 8.8988 6.7752 -6.5236 24 1 10.1437 7.0704 -7.2776 25 1 7.8800 6.2167 -7.4483 26 1 8.3811 8.0267 -5.9144 27 6 5.2977 2.6613 -0.5789 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8702 -0.9352 0.0004 31 1 3.8981 0.4376 -0.0805 32 1 2.6868 3.3549 1.4558 33 1 3.9041 5.4773 1.6686 34 1 5.9048 6.7241 -0.1790 35 1 6.1701 2.1641 -3.1048 36 1 5.2493 3.6491 -2.7653 37 1 6.2057 3.5172 -4.2607 38 1 9.9989 3.0278 -4.4380 39 1 9.2992 2.0868 -3.0992 40 1 8.3368 2.4025 -4.5629 41 1 11.1962 5.3686 -5.6163 42 1 5.6818 1.8722 -1.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346441372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:20 Heat of formation + Delta-G solvation = -76.992511 kcal Electronic energy + Delta-G solvation = -26523.645894 eV Core-core repulsion = 22662.128523 eV Total energy + Delta-G solvation = -3861.517371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89718 -40.94125 -39.58688 -37.97259 -37.10061 -35.39496 -34.83233 -33.82459 -32.69881 -30.88711 -29.88178 -27.72109 -27.31230 -25.46050 -24.89558 -23.53422 -22.37018 -20.94998 -20.39849 -19.38464 -18.70414 -18.57856 -18.28573 -17.63601 -17.07272 -16.95306 -16.47240 -16.21981 -15.90971 -15.58016 -15.43759 -15.04346 -14.70876 -14.47061 -14.34238 -13.94194 -13.83283 -13.78067 -13.49773 -13.24734 -12.97668 -12.80378 -12.76412 -12.73847 -12.66045 -12.20451 -12.13439 -11.78784 -11.36050 -11.23049 -11.08813 -10.73864 -10.71910 -10.51802 -10.05663 -9.40076 -9.10694 -8.15506 -6.32445 -0.17614 0.03403 0.54734 1.41430 1.43829 1.51162 1.69761 2.01263 2.18691 2.31083 2.45719 2.62897 3.12619 3.19238 3.53200 3.69528 3.82957 4.08352 4.26483 4.32684 4.37676 4.40125 4.61042 4.69321 4.78368 4.81441 4.86993 4.89817 4.96853 5.04532 5.06433 5.23879 5.25986 5.35612 5.45939 5.48925 5.57846 5.64992 5.75005 6.01946 6.14400 6.41816 6.70266 6.73765 6.75448 7.09351 7.26015 7.42934 8.88968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.003311 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.587308 B = 8454.314911 C = 9066.097831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.225 4.225 3 C 0.538 3.462 4 O -0.568 6.568 5 N -0.656 5.656 6 C 0.135 3.865 7 C -0.086 4.086 8 C -0.125 4.125 9 C 0.124 3.876 10 O -0.503 6.503 11 C -0.143 4.143 12 C 0.545 3.455 13 O -0.587 6.587 14 N -0.590 5.590 15 C 0.082 3.918 16 C 0.263 3.737 17 H 0.008 0.992 18 C -0.131 4.131 19 C -0.541 4.541 20 H 0.061 0.939 21 C 0.017 3.983 22 N -0.917 5.917 23 Si 0.965 3.035 24 H -0.284 1.284 25 H -0.262 1.262 26 H -0.277 1.277 27 C -0.090 4.090 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.430 0.570 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.316 -12.761 8.549 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.246 4.246 3 C 0.331 3.669 4 O -0.448 6.448 5 N -0.302 5.302 6 C 0.041 3.959 7 C -0.106 4.106 8 C -0.143 4.143 9 C 0.077 3.923 10 O -0.316 6.316 11 C -0.148 4.148 12 C 0.333 3.667 13 O -0.469 6.469 14 N -0.320 5.320 15 C -0.060 4.060 16 C 0.161 3.839 17 H 0.026 0.974 18 C -0.190 4.190 19 C -0.579 4.579 20 H 0.079 0.921 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.186 1.186 26 H -0.203 1.203 27 C -0.111 4.111 28 H 0.115 0.885 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.270 0.730 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.787 -12.160 9.197 25.779 hybrid contribution 0.666 0.882 -1.137 1.585 sum -20.121 -11.278 8.060 24.434 Atomic orbital electron populations 1.25066 0.95154 1.04375 0.86879 1.22809 0.96655 0.95875 1.09214 1.19546 0.81572 0.91232 0.74599 1.90811 1.68677 1.34969 1.50376 1.43385 1.06440 1.08134 1.72255 1.17484 0.92810 0.88697 0.96923 1.21180 1.00115 0.92465 0.96848 1.21374 0.92763 0.99340 1.00871 1.18651 0.91306 0.86787 0.95512 1.84781 1.65069 1.23181 1.58536 1.20121 0.95950 0.97592 1.01100 1.18628 0.88060 0.77640 0.82381 1.90735 1.38580 1.48910 1.68674 1.48175 1.15991 1.60780 1.07026 1.21918 0.86934 0.98491 0.98655 1.18581 0.81771 0.93722 0.89799 0.97423 1.21869 1.02237 0.95864 0.99031 1.21526 0.95923 1.25132 1.15326 0.92068 1.25725 0.94613 0.98171 0.99792 1.70015 1.01491 1.44432 1.39591 0.85511 0.77705 0.79003 0.78812 1.20899 1.18638 1.20255 1.21054 0.94622 0.96592 0.98818 0.88457 0.83072 0.81831 0.73006 0.83802 0.82403 0.73779 0.90875 0.90850 0.90808 0.91283 0.96047 0.93214 0.92562 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 14.31 66.65 0.95 0.38 16 2 C -0.23 -2.02 10.03 23.42 0.23 -1.79 16 3 C 0.54 9.35 7.48 86.56 0.65 10.00 16 4 O -0.57 -14.53 14.08 -4.12 -0.06 -14.59 16 5 N -0.66 -10.17 5.33 -306.80 -1.63 -11.81 16 6 C 0.14 3.04 6.22 38.08 0.24 3.27 16 7 C -0.09 -2.04 8.63 22.42 0.19 -1.85 16 8 C -0.12 -3.16 9.97 22.32 0.22 -2.94 16 9 C 0.12 3.99 6.70 22.84 0.15 4.14 16 10 O -0.50 -17.38 12.60 -83.46 -1.05 -18.43 16 11 C -0.14 -4.93 4.83 -20.02 -0.10 -5.03 16 12 C 0.54 24.41 6.90 86.70 0.60 25.00 16 13 O -0.59 -32.43 15.96 2.92 0.05 -32.39 16 14 N -0.59 -25.80 2.75 -830.55 -2.29 -28.08 16 15 C 0.08 2.70 8.04 127.77 1.03 3.72 16 16 C 0.26 13.92 2.63 44.24 0.12 14.04 16 17 H 0.01 0.50 6.91 -2.39 -0.02 0.48 16 18 C -0.13 -6.36 8.97 71.98 0.65 -5.72 16 19 C -0.54 -29.54 7.96 25.60 0.20 -29.34 16 20 H 0.06 3.24 7.42 -2.91 -0.02 3.21 16 21 C 0.02 0.92 5.30 84.65 0.45 1.37 16 22 N -0.92 -53.07 11.32 21.44 0.24 -52.83 16 23 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 C -0.09 -2.33 7.75 22.66 0.18 -2.16 16 28 H 0.10 1.11 7.49 -2.91 -0.02 1.09 16 29 H 0.15 0.10 8.06 -2.91 -0.02 0.07 16 30 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 31 H 0.43 3.58 8.81 -92.71 -0.82 2.76 16 32 H 0.14 3.26 6.59 -2.91 -0.02 3.24 16 33 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.40 10.78 9.06 -74.05 -0.67 10.10 16 35 H 0.07 1.93 7.14 -2.39 -0.02 1.91 16 36 H 0.07 2.14 6.34 -2.39 -0.02 2.12 16 37 H 0.07 2.57 7.10 -2.39 -0.02 2.55 16 38 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 41 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.15 3.36 6.49 -2.91 -0.02 3.34 16 Total: -1.00 -81.28 356.31 2.64 -78.65 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.41 Total: 21.29 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.76 Total: 13.12 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.68 Total: -92.72 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -1.06 Total: -65.40 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -81.28 2.64 -78.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346441372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.653 kcal (2) G-P(sol) polarization free energy of solvation -81.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds