Wall clock time and date at job start Tue Mar 31 2020 12:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33020 * 1 3 3 C 1.47074 * 119.99869 * 2 1 4 4 O 1.21634 * 119.99495 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99787 * 179.97438 * 3 2 1 6 6 C 1.40043 * 119.99692 * 186.34167 * 5 3 2 7 7 C 1.39122 * 119.92527 * 36.26574 * 6 5 3 8 8 C 1.37995 * 120.32014 * 179.97438 * 7 6 5 9 9 C 1.38694 * 120.16586 * 0.02994 * 8 7 6 10 10 O 1.35716 * 120.07875 * 179.97438 * 9 8 7 11 11 C 1.40112 * 119.84908 * 359.96992 * 9 8 7 12 12 C 1.47540 * 120.16111 * 180.02562 * 11 9 8 13 13 O 1.21592 * 119.99846 * 321.39896 * 12 11 9 14 14 N 1.34781 * 120.00176 * 141.40452 * 12 11 9 15 15 C 1.46495 * 119.99793 * 9.57376 * 14 12 11 16 16 C 1.46493 * 119.99897 * 189.57992 * 14 12 11 17 17 H 1.08998 * 109.47622 * 359.97438 * 16 14 12 18 18 C 1.53008 * 109.47067 * 239.99743 * 16 14 12 19 19 C 1.50698 * 109.47533 * 119.99792 * 16 14 12 20 20 H 1.08004 * 119.99338 * 359.97438 * 19 16 14 21 21 C 1.37872 * 120.00449 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00047 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00264 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47107 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47420 * 119.99747 * 23 21 19 26 26 H 1.48495 * 109.47257 * 240.00227 * 23 21 19 27 27 C 1.38416 * 119.92376 * 216.54530 * 6 5 3 28 28 H 1.08002 * 119.99633 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99984 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00173 * 179.97438 * 2 1 3 31 31 H 0.96996 * 119.99914 * 6.34439 * 5 3 2 32 32 H 1.07995 * 119.84219 * 359.97438 * 7 6 5 33 33 H 1.08005 * 119.91465 * 180.02562 * 8 7 6 34 34 H 0.96706 * 114.00231 * 270.01864 * 10 9 8 35 35 H 1.09007 * 109.47389 * 84.86341 * 15 14 12 36 36 H 1.09003 * 109.47562 * 324.86587 * 15 14 12 37 37 H 1.09000 * 109.47076 * 204.86199 * 15 14 12 38 38 H 1.09001 * 109.46410 * 299.99995 * 18 16 14 39 39 H 1.09001 * 109.46838 * 59.99706 * 18 16 14 40 40 H 1.08998 * 109.47372 * 180.02562 * 18 16 14 41 41 H 0.96997 * 120.00266 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.08619 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0655 1.2737 0.0000 4 8 1.4573 2.3270 -0.0005 5 7 3.4133 1.2737 0.0005 6 6 4.1134 2.4791 0.1345 7 6 3.6181 3.4810 0.9630 8 6 4.3016 4.6718 1.1014 9 6 5.4883 4.8782 0.4140 10 8 6.1588 6.0502 0.5510 11 6 5.9935 3.8740 -0.4224 12 6 7.2556 4.0860 -1.1565 13 8 7.5054 5.1759 -1.6341 14 7 8.1317 3.0715 -1.2979 15 6 7.7466 1.7120 -0.9113 16 6 9.4689 3.3285 -1.8380 17 1 9.5708 4.3893 -2.0667 18 6 9.6689 2.5104 -3.1154 19 6 10.5068 2.9317 -0.8199 20 1 10.2007 2.5289 0.1343 21 6 11.8468 3.0830 -1.1065 22 7 12.2195 3.5731 -2.2685 23 14 13.1332 2.5919 0.1559 24 1 12.4593 2.0724 1.3730 25 1 14.0088 1.5366 -0.4143 26 1 13.9541 3.7767 0.5128 27 6 5.2935 2.6733 -0.5622 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8702 -0.9353 0.0004 31 1 3.8983 0.4388 -0.0919 32 1 2.6943 3.3261 1.5005 33 1 3.9114 5.4450 1.7467 34 1 5.9006 6.7282 -0.0884 35 1 7.2182 1.2353 -1.7370 36 1 7.0948 1.7532 -0.0385 37 1 8.6400 1.1358 -0.6707 38 1 9.5669 1.4495 -2.8870 39 1 8.9182 2.7974 -3.8518 40 1 10.6640 2.7012 -3.5171 41 1 13.1623 3.6792 -2.4703 42 1 5.6749 1.8964 -1.2083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346441374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:25 Heat of formation + Delta-G solvation = -44.343417 kcal Electronic energy + Delta-G solvation = -26499.018930 eV Core-core repulsion = 22638.917330 eV Total energy + Delta-G solvation = -3860.101600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.86162 -39.75080 -38.13800 -36.87997 -35.27291 -34.39355 -33.34233 -32.99722 -31.31111 -29.11989 -28.79532 -26.37484 -25.23216 -24.44175 -23.71187 -22.31077 -20.95575 -20.15768 -18.99728 -18.15065 -17.90590 -17.23413 -16.49292 -16.24866 -15.65122 -15.42455 -15.23418 -14.88202 -14.83163 -14.40951 -14.08277 -13.96021 -13.82890 -13.09539 -12.95038 -12.62514 -12.51421 -12.29969 -12.20398 -11.98194 -11.62550 -11.27699 -11.06331 -10.85438 -10.74398 -10.49608 -10.45604 -10.27377 -10.24556 -10.20179 -10.13143 -9.21298 -9.07518 -8.84406 -8.43850 -8.08950 -7.60395 -6.08234 -4.16292 0.79910 1.06847 1.28897 2.78032 2.87204 3.25635 3.29934 3.34277 3.37519 3.71440 4.02300 4.33052 4.38444 4.40149 4.65059 4.79302 4.87257 5.14050 5.20887 5.24012 5.34985 5.39595 5.66987 5.74956 5.80702 5.84680 5.91914 5.96798 6.13420 6.25902 6.31489 6.37809 6.73134 6.75938 6.82931 7.05212 7.11014 7.40246 7.51625 7.70536 7.81320 7.88924 8.01066 8.17868 8.48622 8.80900 9.00683 9.50266 10.97155 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.003240 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.592464 B = 8638.895633 C = 9325.228151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.215 4.215 3 C 0.542 3.458 4 O -0.527 6.527 5 N -0.667 5.667 6 C 0.121 3.879 7 C -0.086 4.086 8 C -0.138 4.138 9 C 0.149 3.851 10 O -0.484 6.484 11 C -0.128 4.128 12 C 0.554 3.446 13 O -0.541 6.541 14 N -0.585 5.585 15 C 0.075 3.925 16 C 0.259 3.741 17 H 0.064 0.936 18 C -0.146 4.146 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.104 4.104 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.413 0.587 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.397 0.603 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.012 0.988 40 H 0.094 0.906 41 H 0.263 0.737 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 -8.834 4.899 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.236 4.236 3 C 0.332 3.668 4 O -0.404 6.404 5 N -0.312 5.312 6 C 0.028 3.972 7 C -0.106 4.106 8 C -0.157 4.157 9 C 0.102 3.898 10 O -0.295 6.295 11 C -0.132 4.132 12 C 0.341 3.659 13 O -0.420 6.420 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.159 3.841 17 H 0.081 0.919 18 C -0.204 4.204 19 C -0.565 4.565 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.125 4.125 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.249 0.751 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.255 0.745 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.416 -7.796 4.996 22.417 hybrid contribution 0.842 -0.676 0.255 1.110 sum -19.574 -8.472 5.251 21.966 Atomic orbital electron populations 1.24802 0.95290 1.03556 0.89078 1.22710 0.96468 0.96641 1.07779 1.18842 0.81699 0.90322 0.75903 1.90829 1.67969 1.33203 1.48383 1.43392 1.06411 1.08689 1.72708 1.17485 0.93417 0.87895 0.98413 1.20973 0.99998 0.92727 0.96914 1.21230 0.94078 0.98519 1.01855 1.18420 0.89927 0.87134 0.94298 1.84719 1.64170 1.21900 1.58758 1.20457 0.97726 0.95095 0.99938 1.17909 0.82946 0.84845 0.80201 1.90714 1.76932 1.25037 1.49338 1.48124 1.15605 1.06435 1.61366 1.21987 1.01633 0.85073 0.98144 1.18980 0.75583 0.98111 0.91383 0.91860 1.22086 1.02597 0.98220 0.97535 1.21360 0.90617 1.43353 1.01144 0.92138 1.24889 0.98409 0.94910 0.95552 1.69888 1.16476 1.44696 1.21463 0.86432 0.81343 0.78222 0.81357 1.19778 1.20942 1.20872 1.21441 0.94771 0.97319 0.98959 0.86445 0.86665 0.85159 0.75085 0.84753 0.84602 0.74492 0.93830 0.92113 0.89847 0.95193 0.96933 0.88763 0.92708 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 14.31 28.92 0.41 -0.07 16 2 C -0.22 -1.37 10.03 -37.81 -0.38 -1.74 16 3 C 0.54 5.50 7.46 -12.68 -0.09 5.40 16 4 O -0.53 -7.28 14.15 5.25 0.07 -7.20 16 5 N -0.67 -6.23 5.33 -10.95 -0.06 -6.29 16 6 C 0.12 1.51 6.21 -83.71 -0.52 0.99 16 7 C -0.09 -1.12 8.63 -39.34 -0.34 -1.45 16 8 C -0.14 -1.85 9.97 -39.50 -0.39 -2.25 16 9 C 0.15 2.43 6.68 -38.71 -0.26 2.17 16 10 O -0.48 -8.18 12.22 -35.43 -0.43 -8.61 16 11 C -0.13 -2.22 5.36 -104.86 -0.56 -2.79 16 12 C 0.55 12.08 7.17 -12.47 -0.09 11.99 16 13 O -0.54 -13.57 15.45 -11.29 -0.17 -13.75 16 14 N -0.58 -12.72 2.75 -176.49 -0.49 -13.21 16 15 C 0.08 1.25 7.80 59.84 0.47 1.72 16 16 C 0.26 6.67 2.62 -69.08 -0.18 6.49 16 17 H 0.06 1.90 6.94 -51.93 -0.36 1.54 16 18 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 19 C -0.53 -14.26 7.95 -34.44 -0.27 -14.53 16 20 H 0.06 1.62 7.42 -52.48 -0.39 1.23 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 23 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.10 -1.45 7.41 -38.98 -0.29 -1.74 16 28 H 0.12 0.30 8.06 -52.49 -0.42 -0.12 16 29 H 0.12 0.77 7.49 -52.49 -0.39 0.38 16 30 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.41 2.46 8.81 -40.82 -0.36 2.10 16 32 H 0.13 1.67 6.65 -52.49 -0.35 1.32 16 33 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.40 5.27 9.06 45.56 0.41 5.68 16 35 H 0.04 0.61 7.09 -51.92 -0.37 0.24 16 36 H 0.06 0.88 5.48 -51.93 -0.28 0.59 16 37 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 38 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.15 1.78 5.12 -52.49 -0.27 1.51 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -35.43 353.48 -6.67 -42.11 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.27 Total: 7.34 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.26 Total: 2.72 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.08 Total: -43.98 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.53 Total: -29.56 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.43 -6.67 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346441374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.237 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds