Wall clock time and date at job start Tue Mar 31 2020 12:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33020 * 1 3 3 C 1.47074 * 119.99869 * 2 1 4 4 O 1.21634 * 119.99495 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99787 * 179.97438 * 3 2 1 6 6 C 1.40043 * 119.99692 * 186.34167 * 5 3 2 7 7 C 1.39122 * 119.92527 * 36.26574 * 6 5 3 8 8 C 1.37995 * 120.32014 * 179.97438 * 7 6 5 9 9 C 1.38694 * 120.16586 * 0.02994 * 8 7 6 10 10 O 1.35716 * 120.07875 * 179.97438 * 9 8 7 11 11 C 1.40112 * 119.84908 * 359.96992 * 9 8 7 12 12 C 1.47540 * 120.16111 * 180.02562 * 11 9 8 13 13 O 1.21592 * 119.99846 * 321.39896 * 12 11 9 14 14 N 1.34781 * 120.00176 * 141.40452 * 12 11 9 15 15 C 1.46495 * 119.99793 * 9.57376 * 14 12 11 16 16 C 1.46493 * 119.99897 * 189.57992 * 14 12 11 17 17 H 1.08998 * 109.47622 * 359.97438 * 16 14 12 18 18 C 1.53008 * 109.47067 * 239.99743 * 16 14 12 19 19 C 1.50698 * 109.47533 * 119.99792 * 16 14 12 20 20 H 1.08004 * 119.99338 * 359.97438 * 19 16 14 21 21 C 1.37872 * 120.00449 * 179.97438 * 19 16 14 22 22 N 1.31512 * 120.00047 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00264 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47107 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47420 * 119.99747 * 23 21 19 26 26 H 1.48495 * 109.47257 * 240.00227 * 23 21 19 27 27 C 1.38416 * 119.92376 * 216.54530 * 6 5 3 28 28 H 1.08002 * 119.99633 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99984 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00173 * 179.97438 * 2 1 3 31 31 H 0.96996 * 119.99914 * 6.34439 * 5 3 2 32 32 H 1.07995 * 119.84219 * 359.97438 * 7 6 5 33 33 H 1.08005 * 119.91465 * 180.02562 * 8 7 6 34 34 H 0.96706 * 114.00231 * 270.01864 * 10 9 8 35 35 H 1.09007 * 109.47389 * 84.86341 * 15 14 12 36 36 H 1.09003 * 109.47562 * 324.86587 * 15 14 12 37 37 H 1.09000 * 109.47076 * 204.86199 * 15 14 12 38 38 H 1.09001 * 109.46410 * 299.99995 * 18 16 14 39 39 H 1.09001 * 109.46838 * 59.99706 * 18 16 14 40 40 H 1.08998 * 109.47372 * 180.02562 * 18 16 14 41 41 H 0.96997 * 120.00266 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.08619 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0655 1.2737 0.0000 4 8 1.4573 2.3270 -0.0005 5 7 3.4133 1.2737 0.0005 6 6 4.1134 2.4791 0.1345 7 6 3.6181 3.4810 0.9630 8 6 4.3016 4.6718 1.1014 9 6 5.4883 4.8782 0.4140 10 8 6.1588 6.0502 0.5510 11 6 5.9935 3.8740 -0.4224 12 6 7.2556 4.0860 -1.1565 13 8 7.5054 5.1759 -1.6341 14 7 8.1317 3.0715 -1.2979 15 6 7.7466 1.7120 -0.9113 16 6 9.4689 3.3285 -1.8380 17 1 9.5708 4.3893 -2.0667 18 6 9.6689 2.5104 -3.1154 19 6 10.5068 2.9317 -0.8199 20 1 10.2007 2.5289 0.1343 21 6 11.8468 3.0830 -1.1065 22 7 12.2195 3.5731 -2.2685 23 14 13.1332 2.5919 0.1559 24 1 12.4593 2.0724 1.3730 25 1 14.0088 1.5366 -0.4143 26 1 13.9541 3.7767 0.5128 27 6 5.2935 2.6733 -0.5622 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8702 -0.9353 0.0004 31 1 3.8983 0.4388 -0.0919 32 1 2.6943 3.3261 1.5005 33 1 3.9114 5.4450 1.7467 34 1 5.9006 6.7282 -0.0884 35 1 7.2182 1.2353 -1.7370 36 1 7.0948 1.7532 -0.0385 37 1 8.6400 1.1358 -0.6707 38 1 9.5669 1.4495 -2.8870 39 1 8.9182 2.7974 -3.8518 40 1 10.6640 2.7012 -3.5171 41 1 13.1623 3.6792 -2.4703 42 1 5.6749 1.8964 -1.2083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346441374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:24 Heat of formation + Delta-G solvation = -70.156013 kcal Electronic energy + Delta-G solvation = -26500.138248 eV Core-core repulsion = 22638.917330 eV Total energy + Delta-G solvation = -3861.220919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93331 -40.94370 -39.55210 -38.01953 -37.06517 -35.40767 -34.86604 -33.82167 -32.77097 -30.79490 -29.91830 -27.83400 -27.31514 -25.44577 -24.83096 -23.55963 -22.36279 -20.96018 -20.47772 -19.32350 -18.68201 -18.57841 -18.27898 -17.68516 -16.98514 -16.84251 -16.59843 -16.10346 -16.04929 -15.57668 -15.43568 -15.08501 -14.82286 -14.46140 -14.32947 -14.01948 -13.82764 -13.66799 -13.59130 -13.11706 -13.00625 -12.78134 -12.74965 -12.70900 -12.53150 -12.20551 -12.11803 -11.75036 -11.37012 -11.21723 -11.14297 -10.72576 -10.66758 -10.51314 -10.05515 -9.40535 -9.08330 -8.15975 -6.32680 -0.21912 0.02641 0.53999 1.40142 1.42534 1.53581 1.77492 2.00095 2.15927 2.34300 2.45745 2.66637 3.12135 3.22908 3.53690 3.69184 3.82184 4.08672 4.24879 4.32754 4.38135 4.40148 4.59469 4.69524 4.78344 4.81247 4.86839 4.90031 4.97888 5.04645 5.06347 5.23781 5.25433 5.35553 5.46145 5.48971 5.58228 5.65067 5.75195 6.02640 6.14360 6.42650 6.73101 6.74273 6.75043 7.09831 7.25015 7.42309 8.88833 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.003240 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.592464 B = 8638.895633 C = 9325.228151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.224 4.224 3 C 0.537 3.463 4 O -0.571 6.571 5 N -0.655 5.655 6 C 0.131 3.869 7 C -0.082 4.082 8 C -0.128 4.128 9 C 0.129 3.871 10 O -0.505 6.505 11 C -0.151 4.151 12 C 0.545 3.455 13 O -0.591 6.591 14 N -0.593 5.593 15 C 0.071 3.929 16 C 0.264 3.736 17 H 0.007 0.993 18 C -0.131 4.131 19 C -0.538 4.538 20 H 0.060 0.940 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.286 1.286 27 C -0.096 4.096 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.166 0.834 31 H 0.432 0.568 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 -12.116 6.264 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.245 4.245 3 C 0.330 3.670 4 O -0.451 6.451 5 N -0.302 5.302 6 C 0.037 3.963 7 C -0.103 4.103 8 C -0.147 4.147 9 C 0.083 3.917 10 O -0.317 6.317 11 C -0.155 4.155 12 C 0.334 3.666 13 O -0.473 6.473 14 N -0.322 5.322 15 C -0.071 4.071 16 C 0.162 3.838 17 H 0.025 0.975 18 C -0.190 4.190 19 C -0.577 4.577 20 H 0.079 0.921 21 C -0.184 4.184 22 N -0.556 5.556 23 Si 0.791 3.209 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.213 1.213 27 C -0.117 4.117 28 H 0.170 0.830 29 H 0.115 0.885 30 H 0.183 0.817 31 H 0.272 0.728 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.286 -11.155 6.367 25.723 hybrid contribution 1.264 0.352 -0.170 1.323 sum -21.022 -10.803 6.196 24.435 Atomic orbital electron populations 1.25069 0.95180 1.04350 0.86961 1.22823 0.96642 0.95877 1.09131 1.19575 0.81646 0.91231 0.74590 1.90814 1.68727 1.35067 1.50473 1.43369 1.06387 1.08346 1.72088 1.17500 0.92762 0.88918 0.97118 1.21192 0.99936 0.92554 0.96593 1.21377 0.92780 0.99332 1.01235 1.18670 0.91014 0.86738 0.95306 1.84673 1.65037 1.22661 1.59363 1.20192 0.96618 0.97361 1.01328 1.18612 0.84236 0.84033 0.79712 1.90667 1.78417 1.26927 1.51306 1.48112 1.14192 1.08658 1.61246 1.22287 1.02089 0.82230 1.00518 1.18579 0.77831 0.95087 0.92312 0.97545 1.21868 1.01271 0.99094 0.96719 1.21584 0.91329 1.43406 1.01374 0.92141 1.25733 1.00472 0.94791 0.97400 1.70029 1.16956 1.45414 1.23165 0.85393 0.78599 0.77841 0.79096 1.18917 1.19694 1.21262 1.21467 0.94856 0.96378 0.98976 0.83030 0.88541 0.81682 0.72845 0.83860 0.82416 0.73432 0.90407 0.89647 0.90680 0.93062 0.96206 0.91293 0.92572 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 14.31 66.66 0.95 0.37 16 2 C -0.22 -2.01 10.03 23.43 0.23 -1.78 16 3 C 0.54 9.42 7.46 86.56 0.65 10.07 16 4 O -0.57 -14.84 14.15 -4.14 -0.06 -14.90 16 5 N -0.66 -10.07 5.33 -306.79 -1.63 -11.71 16 6 C 0.13 2.95 6.21 38.08 0.24 3.19 16 7 C -0.08 -1.97 8.63 22.42 0.19 -1.78 16 8 C -0.13 -3.30 9.97 22.32 0.22 -3.07 16 9 C 0.13 4.23 6.68 22.83 0.15 4.38 16 10 O -0.50 -17.73 12.22 -74.52 -0.91 -18.64 16 11 C -0.15 -5.23 5.36 -20.02 -0.11 -5.34 16 12 C 0.54 24.51 7.17 86.70 0.62 25.13 16 13 O -0.59 -31.50 15.45 11.84 0.18 -31.31 16 14 N -0.59 -26.09 2.75 -830.55 -2.29 -28.37 16 15 C 0.07 2.21 7.80 127.77 1.00 3.21 16 16 C 0.26 14.05 2.62 44.25 0.12 14.16 16 17 H 0.01 0.42 6.94 -2.39 -0.02 0.40 16 18 C -0.13 -6.37 8.97 71.98 0.65 -5.72 16 19 C -0.54 -29.67 7.95 25.60 0.20 -29.47 16 20 H 0.06 3.25 7.42 -2.91 -0.02 3.23 16 21 C 0.02 0.87 5.30 84.65 0.45 1.32 16 22 N -0.92 -53.24 11.32 21.44 0.24 -52.99 16 23 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.10 -2.48 7.41 22.66 0.17 -2.32 16 28 H 0.15 0.09 8.06 -2.91 -0.02 0.07 16 29 H 0.10 1.11 7.49 -2.91 -0.02 1.09 16 30 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.43 3.31 8.81 -92.71 -0.82 2.50 16 32 H 0.14 3.25 6.65 -2.91 -0.02 3.23 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.41 11.62 9.06 -74.05 -0.67 10.94 16 35 H 0.08 1.91 7.09 -2.38 -0.02 1.89 16 36 H 0.09 2.25 5.48 -2.39 -0.01 2.24 16 37 H 0.07 2.50 7.10 -2.39 -0.02 2.48 16 38 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.16 3.49 5.12 -2.91 -0.01 3.48 16 Total: -1.00 -81.44 353.48 2.89 -78.55 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.40 Total: 21.66 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.73 Total: 12.35 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -3.68 Total: -93.07 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -0.79 Total: -64.86 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -81.44 2.89 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346441374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.395 kcal (2) G-P(sol) polarization free energy of solvation -81.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds