Wall clock time and date at job start Tue Mar 31 2020 12:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 112.77987 * 2 1 4 4 C 1.53756 * 113.55498 * 130.86399 * 2 1 3 5 5 C 1.53493 * 83.25683 * 140.98598 * 4 2 1 6 6 N 1.47059 * 87.98835 * 333.76323 * 5 4 2 7 7 C 1.34777 * 136.05708 * 207.08942 * 6 5 4 8 8 O 1.21355 * 120.00101 * 179.97438 * 7 6 5 9 9 C 1.49453 * 119.99989 * 359.97438 * 7 6 5 10 10 O 1.21341 * 119.99856 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99768 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99653 * 180.02562 * 11 9 7 13 13 C 1.50701 * 109.46961 * 179.97438 * 12 11 9 14 14 C 1.38304 * 119.92928 * 269.73041 * 13 12 11 15 15 C 1.38101 * 120.06661 * 179.72760 * 14 13 12 16 16 C 1.38880 * 119.93219 * 0.51999 * 15 14 13 17 17 O 1.35751 * 120.06991 * 179.72845 * 16 15 14 18 18 C 1.34830 * 116.99835 * 174.48953 * 17 16 15 19 19 H 1.08005 * 120.00046 * 5.05655 * 18 17 16 20 20 C 1.38655 * 120.00076 * 185.05845 * 18 17 16 21 21 N 1.31560 * 119.99672 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00092 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47131 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47055 * 120.00036 * 22 20 18 25 25 H 1.48505 * 109.47241 * 240.00000 * 22 20 18 26 26 C 1.38882 * 119.85734 * 359.75302 * 16 15 14 27 27 C 1.38098 * 119.93413 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47055 * 171.27185 * 1 2 3 29 29 H 1.08997 * 109.47283 * 291.27070 * 1 2 3 30 30 H 1.09000 * 109.47244 * 51.27044 * 1 2 3 31 31 H 1.08993 * 114.39406 * 27.41984 * 4 2 1 32 32 H 1.08998 * 114.08354 * 254.52894 * 4 2 1 33 33 H 1.09009 * 113.46520 * 218.98076 * 5 4 2 34 34 H 1.09001 * 113.46786 * 88.54645 * 5 4 2 35 35 H 0.97002 * 119.99891 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47359 * 60.00034 * 12 11 9 37 37 H 1.08992 * 109.47237 * 299.99909 * 12 11 9 38 38 H 1.08001 * 119.96710 * 359.97288 * 14 13 12 39 39 H 1.08005 * 120.03357 * 180.26925 * 15 14 13 40 40 H 0.97004 * 119.99525 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.02822 * 180.02562 * 26 16 15 42 42 H 1.07997 * 119.96570 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0049 0.0000 4 6 2.1444 -0.9221 1.0659 5 6 3.1581 -1.2301 -0.0448 6 7 2.1156 -0.8810 -1.0216 7 6 1.8273 -1.2164 -2.2947 8 8 0.8569 -0.7370 -2.8436 9 6 2.7025 -2.1789 -3.0305 10 8 3.6724 -2.6586 -2.4815 11 7 2.4143 -2.5139 -4.3038 12 6 3.2719 -3.4577 -5.0248 13 6 2.7347 -3.6611 -6.4180 14 6 1.8202 -4.6689 -6.6647 15 6 1.3218 -4.8543 -7.9392 16 6 1.7480 -4.0344 -8.9760 17 8 1.2641 -4.2177 -10.2310 18 6 1.6306 -3.3178 -11.1658 19 1 2.3449 -2.5455 -10.9212 20 6 1.0904 -3.3838 -12.4411 21 7 0.2200 -4.3242 -12.7388 22 14 1.5976 -2.1366 -13.7359 23 1 2.5818 -1.1898 -13.1526 24 1 2.2133 -2.8422 -14.8884 25 1 0.4014 -1.3867 -14.1963 26 6 2.6708 -3.0269 -8.7261 27 6 3.1611 -2.8430 -7.4483 28 1 -0.3633 -1.0158 -0.1559 29 1 -0.3634 0.3728 0.9576 30 1 -0.3634 0.6429 -0.8017 31 1 1.5166 -1.7682 1.3452 32 1 2.5655 -0.3942 1.9215 33 1 3.4552 -2.2782 -0.0829 34 1 4.0093 -0.5494 -0.0565 35 1 1.6387 -2.1306 -4.7425 36 1 3.2854 -4.4119 -4.4981 37 1 4.2848 -3.0590 -5.0802 38 1 1.4925 -5.3091 -5.8589 39 1 0.6044 -5.6387 -8.1303 40 1 -0.1582 -4.3702 -13.6309 41 1 3.0038 -2.3874 -9.5302 42 1 3.8784 -2.0595 -7.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350283824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:29 Heat of formation + Delta-G solvation = -30.214526 kcal Electronic energy + Delta-G solvation = -25198.569347 eV Core-core repulsion = 21339.080422 eV Total energy + Delta-G solvation = -3859.488926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08065 -39.61560 -39.02232 -37.85940 -36.90487 -34.57315 -32.38465 -31.15964 -30.32383 -30.06625 -29.75124 -26.39200 -25.29286 -23.98183 -23.58495 -22.07941 -21.51046 -20.69297 -19.51156 -18.16359 -18.05912 -17.18011 -17.03504 -16.23158 -15.75851 -15.38474 -15.24453 -14.73658 -14.59144 -14.30194 -13.94842 -13.90051 -13.73225 -13.68878 -13.38094 -12.99719 -12.81212 -12.74207 -12.32766 -12.16759 -12.07192 -12.00820 -11.70628 -11.66850 -11.39233 -10.98899 -10.84145 -10.82343 -10.70882 -10.48155 -9.59508 -9.44196 -9.21010 -9.09975 -8.92375 -8.30190 -7.35251 -6.54061 -4.12712 1.36746 1.85114 2.11961 2.27344 3.07344 3.09544 3.15188 3.15383 3.36210 3.89135 3.89937 4.28947 4.49844 4.54449 4.57193 4.76351 4.96752 4.98539 5.00344 5.11386 5.18946 5.21069 5.34376 5.38927 5.47455 5.52200 5.62363 5.73658 5.74646 5.78835 5.92799 6.10654 6.25761 6.32190 6.57532 6.78172 6.92778 7.08841 7.16150 7.24175 7.26454 7.33856 7.64180 7.69535 7.90764 7.96863 8.91340 9.59065 10.63424 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002168 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.185212 B =12913.821234 C =13284.650943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.105 3.895 6 N -0.623 5.623 7 C 0.533 3.467 8 O -0.517 6.517 9 C 0.506 3.494 10 O -0.527 6.527 11 N -0.689 5.689 12 C 0.179 3.821 13 C -0.220 4.220 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.162 3.838 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.858 5.858 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.048 4.048 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 6.991 24.591 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 H 0.115 0.885 4 C -0.193 4.193 5 C -0.017 4.017 6 N -0.360 5.360 7 C 0.317 3.683 8 O -0.392 6.392 9 C 0.286 3.714 10 O -0.404 6.404 11 N -0.342 5.342 12 C 0.057 3.943 13 C -0.221 4.221 14 C -0.071 4.071 15 C -0.214 4.214 16 C 0.107 3.893 17 O -0.074 6.074 18 C -0.469 4.469 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.256 4.256 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.437 6.575 24.093 25.365 hybrid contribution -0.021 0.873 -1.040 1.358 sum 4.416 7.448 23.052 24.625 Atomic orbital electron populations 1.21940 0.93602 1.03271 1.02569 1.22857 0.95741 0.95024 0.83553 0.88483 1.23605 0.98741 1.00443 0.96483 1.23025 0.91806 1.03290 0.83612 1.49574 1.30562 1.45252 1.10577 1.19889 0.85587 0.82706 0.80070 1.90784 1.28301 1.54270 1.65825 1.20001 0.85559 0.82745 0.83119 1.90715 1.28227 1.53940 1.67519 1.46256 1.30898 1.45066 1.11956 1.20130 0.92941 0.92107 0.89116 1.19138 1.06610 1.02695 0.93670 1.20530 0.94886 0.96151 0.95510 1.20216 1.05989 1.03782 0.91431 1.19447 0.91229 0.92454 0.86162 1.83979 1.62626 1.47460 1.13377 1.21418 1.26021 1.09629 0.89833 0.88821 1.25335 0.95754 0.97931 0.97501 1.70050 1.26639 1.31227 1.21326 0.85617 0.78656 0.79288 0.79705 1.19025 1.20058 1.20033 1.21159 1.03645 1.03230 0.97580 1.20637 0.97215 0.96683 0.92164 0.91939 0.91070 0.91456 0.88471 0.88869 0.88976 0.89381 0.74931 0.90934 0.90983 0.86886 0.86277 0.91900 0.85331 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.26 37.16 0.34 -0.84 16 2 C 0.13 0.95 4.68 -72.27 -0.34 0.61 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -0.76 8.04 -26.08 -0.21 -0.97 16 5 C 0.11 0.77 7.60 -8.52 -0.06 0.71 16 6 N -0.62 -6.49 3.56 -177.82 -0.63 -7.12 16 7 C 0.53 7.18 8.05 -11.58 -0.09 7.09 16 8 O -0.52 -8.10 16.68 5.49 0.09 -8.01 16 9 C 0.51 7.06 7.89 -11.58 -0.09 6.96 16 10 O -0.53 -7.94 15.20 5.50 0.08 -7.85 16 11 N -0.69 -9.46 5.54 -61.91 -0.34 -9.81 16 12 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 13 C -0.22 -3.55 5.25 -104.58 -0.55 -4.10 16 14 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 15 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 16 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 17 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 18 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 19 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 22 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.24 -4.95 9.17 -39.39 -0.36 -5.31 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.77 7.39 -51.92 -0.38 0.38 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 5.77 7.94 -40.82 -0.32 5.44 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -32.28 363.83 -7.68 -39.96 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.48 Total: 7.18 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.62 Total: -6.21 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.22 Total: -40.91 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.18 Total: -20.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.28 -7.68 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350283824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.746 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds