Wall clock time and date at job start Tue Mar 31 2020 12:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 112.77987 * 2 1 4 4 C 1.53756 * 113.55498 * 130.86399 * 2 1 3 5 5 C 1.53493 * 83.25683 * 140.98598 * 4 2 1 6 6 N 1.47059 * 87.98835 * 333.76323 * 5 4 2 7 7 C 1.34777 * 136.05708 * 207.08942 * 6 5 4 8 8 O 1.21355 * 120.00101 * 179.97438 * 7 6 5 9 9 C 1.49453 * 119.99989 * 359.97438 * 7 6 5 10 10 O 1.21341 * 119.99856 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99768 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99653 * 180.02562 * 11 9 7 13 13 C 1.50701 * 109.46961 * 179.97438 * 12 11 9 14 14 C 1.38304 * 119.92928 * 269.73041 * 13 12 11 15 15 C 1.38101 * 120.06661 * 179.72760 * 14 13 12 16 16 C 1.38880 * 119.93219 * 0.51999 * 15 14 13 17 17 O 1.35751 * 120.06991 * 179.72845 * 16 15 14 18 18 C 1.34830 * 116.99835 * 174.48953 * 17 16 15 19 19 H 1.08005 * 120.00046 * 5.05655 * 18 17 16 20 20 C 1.38655 * 120.00076 * 185.05845 * 18 17 16 21 21 N 1.31560 * 119.99672 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00092 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47131 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47055 * 120.00036 * 22 20 18 25 25 H 1.48505 * 109.47241 * 240.00000 * 22 20 18 26 26 C 1.38882 * 119.85734 * 359.75302 * 16 15 14 27 27 C 1.38098 * 119.93413 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47055 * 171.27185 * 1 2 3 29 29 H 1.08997 * 109.47283 * 291.27070 * 1 2 3 30 30 H 1.09000 * 109.47244 * 51.27044 * 1 2 3 31 31 H 1.08993 * 114.39406 * 27.41984 * 4 2 1 32 32 H 1.08998 * 114.08354 * 254.52894 * 4 2 1 33 33 H 1.09009 * 113.46520 * 218.98076 * 5 4 2 34 34 H 1.09001 * 113.46786 * 88.54645 * 5 4 2 35 35 H 0.97002 * 119.99891 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47359 * 60.00034 * 12 11 9 37 37 H 1.08992 * 109.47237 * 299.99909 * 12 11 9 38 38 H 1.08001 * 119.96710 * 359.97288 * 14 13 12 39 39 H 1.08005 * 120.03357 * 180.26925 * 15 14 13 40 40 H 0.97004 * 119.99525 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.02822 * 180.02562 * 26 16 15 42 42 H 1.07997 * 119.96570 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0049 0.0000 4 6 2.1444 -0.9221 1.0659 5 6 3.1581 -1.2301 -0.0448 6 7 2.1156 -0.8810 -1.0216 7 6 1.8273 -1.2164 -2.2947 8 8 0.8569 -0.7370 -2.8436 9 6 2.7025 -2.1789 -3.0305 10 8 3.6724 -2.6586 -2.4815 11 7 2.4143 -2.5139 -4.3038 12 6 3.2719 -3.4577 -5.0248 13 6 2.7347 -3.6611 -6.4180 14 6 1.8202 -4.6689 -6.6647 15 6 1.3218 -4.8543 -7.9392 16 6 1.7480 -4.0344 -8.9760 17 8 1.2641 -4.2177 -10.2310 18 6 1.6306 -3.3178 -11.1658 19 1 2.3449 -2.5455 -10.9212 20 6 1.0904 -3.3838 -12.4411 21 7 0.2200 -4.3242 -12.7388 22 14 1.5976 -2.1366 -13.7359 23 1 2.5818 -1.1898 -13.1526 24 1 2.2133 -2.8422 -14.8884 25 1 0.4014 -1.3867 -14.1963 26 6 2.6708 -3.0269 -8.7261 27 6 3.1611 -2.8430 -7.4483 28 1 -0.3633 -1.0158 -0.1559 29 1 -0.3634 0.3728 0.9576 30 1 -0.3634 0.6429 -0.8017 31 1 1.5166 -1.7682 1.3452 32 1 2.5655 -0.3942 1.9215 33 1 3.4552 -2.2782 -0.0829 34 1 4.0093 -0.5494 -0.0565 35 1 1.6387 -2.1306 -4.7425 36 1 3.2854 -4.4119 -4.4981 37 1 4.2848 -3.0590 -5.0802 38 1 1.4925 -5.3091 -5.8589 39 1 0.6044 -5.6387 -8.1303 40 1 -0.1582 -4.3702 -13.6309 41 1 3.0038 -2.3874 -9.5302 42 1 3.8784 -2.0595 -7.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350283824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:28 Heat of formation + Delta-G solvation = -52.733376 kcal Electronic energy + Delta-G solvation = -25199.545838 eV Core-core repulsion = 21339.080422 eV Total energy + Delta-G solvation = -3860.465416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95304 -40.93223 -40.31419 -38.86691 -38.51275 -35.83531 -34.30305 -31.90783 -31.87355 -31.51995 -30.40675 -27.91741 -26.92099 -25.01392 -24.19258 -23.68554 -22.46244 -22.08354 -20.47349 -19.88995 -19.06494 -18.76784 -18.13374 -17.17795 -16.82964 -16.52464 -16.48988 -16.19274 -15.98244 -15.59132 -15.53985 -15.12474 -14.93269 -14.66173 -14.45281 -14.38947 -14.20565 -13.69652 -13.59580 -13.33297 -13.08727 -12.93916 -12.79368 -12.65819 -12.58636 -12.39338 -12.34495 -12.29024 -12.10893 -11.42776 -11.23043 -10.86397 -10.59848 -10.30815 -9.90007 -9.84326 -9.05260 -8.50514 -6.18757 0.32878 0.45321 0.54923 1.24242 1.34534 1.42851 1.52621 2.11923 2.15364 2.39485 2.81369 3.11658 3.30772 3.44453 3.46056 3.79589 3.97209 3.98685 4.04724 4.13787 4.21400 4.34379 4.39897 4.47473 4.52667 4.63914 4.75138 4.76585 4.87164 4.91779 5.00126 5.02928 5.11644 5.14119 5.20412 5.22926 5.37339 5.48125 5.66067 5.69725 5.99285 6.06177 6.13985 6.40784 6.60652 6.92515 6.94269 7.72939 8.72468 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002168 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.185212 B =12913.821234 C =13284.650943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 H 0.117 0.883 4 C -0.130 4.130 5 C 0.097 3.903 6 N -0.627 5.627 7 C 0.525 3.475 8 O -0.552 6.552 9 C 0.509 3.491 10 O -0.538 6.538 11 N -0.689 5.689 12 C 0.184 3.816 13 C -0.189 4.189 14 C -0.042 4.042 15 C -0.206 4.206 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.918 5.918 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.245 4.245 27 C -0.044 4.044 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 8.579 28.259 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.134 0.866 4 C -0.168 4.168 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.309 3.691 8 O -0.430 6.430 9 C 0.289 3.711 10 O -0.415 6.415 11 N -0.341 5.341 12 C 0.062 3.938 13 C -0.190 4.190 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.073 3.927 17 O -0.134 6.134 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.264 4.264 27 C -0.063 4.063 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.250 0.750 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.167 0.833 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.382 8.170 27.868 29.734 hybrid contribution -0.497 0.365 -1.686 1.795 sum 5.885 8.535 26.182 28.160 Atomic orbital electron populations 1.21917 0.94141 1.01749 1.03266 1.23248 0.95496 0.96123 0.83181 0.86585 1.23559 0.97084 0.99839 0.96274 1.23315 0.92416 1.03175 0.83501 1.49928 1.31517 1.44962 1.09834 1.19804 0.85315 0.82825 0.81115 1.90765 1.29643 1.55723 1.66910 1.20120 0.85409 0.82591 0.82948 1.90707 1.28688 1.54411 1.67737 1.46130 1.30831 1.45050 1.12117 1.20121 0.93246 0.93114 0.87316 1.19480 1.04121 1.00585 0.94792 1.20912 0.93945 0.96397 0.94835 1.20464 1.06317 1.03477 0.92221 1.20010 0.92593 0.94371 0.85770 1.83949 1.65232 1.49093 1.15107 1.21880 1.26505 1.10093 0.90480 0.87894 1.26607 0.95660 1.00101 0.99677 1.70188 1.29206 1.34063 1.22130 0.84521 0.78630 0.76623 0.76391 1.17430 1.19293 1.19410 1.21254 1.03490 1.02631 0.99033 1.20966 0.97154 0.97356 0.90820 0.93715 0.88225 0.93703 0.88443 0.85289 0.90057 0.87600 0.74987 0.89477 0.89727 0.83307 0.86554 0.91760 0.86106 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.26 71.98 0.67 -1.41 16 2 C 0.12 1.41 4.68 41.87 0.20 1.60 16 3 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.13 -0.77 8.04 31.01 0.25 -0.52 16 5 C 0.10 1.14 7.60 83.17 0.63 1.77 16 6 N -0.63 -11.78 3.56 -834.86 -2.97 -14.75 16 7 C 0.53 13.50 8.05 87.27 0.70 14.20 16 8 O -0.55 -17.12 16.68 -3.26 -0.05 -17.18 16 9 C 0.51 13.14 7.89 87.27 0.69 13.83 16 10 O -0.54 -14.83 15.20 -3.22 -0.05 -14.87 16 11 N -0.69 -17.17 5.54 -468.15 -2.59 -19.76 16 12 C 0.18 4.39 5.80 85.63 0.50 4.89 16 13 C -0.19 -5.55 5.25 -19.83 -0.10 -5.66 16 14 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 15 C -0.21 -8.45 9.99 22.39 0.22 -8.23 16 16 C 0.12 6.01 6.65 22.58 0.15 6.16 16 17 O -0.23 -13.53 9.76 -22.74 -0.22 -13.75 16 18 C -0.41 -23.81 9.49 67.92 0.64 -23.17 16 19 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 20 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 21 N -0.92 -56.02 13.67 21.61 0.30 -55.73 16 22 Si 1.02 42.61 29.55 68.60 2.03 44.64 16 23 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 C -0.24 -10.32 9.17 22.39 0.21 -10.12 16 27 C -0.04 -1.46 9.69 22.25 0.22 -1.25 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.08 1.16 7.39 -2.38 -0.02 1.14 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.41 10.72 7.94 -92.71 -0.74 9.98 16 36 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 37 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 38 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 42 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -76.03 363.83 2.40 -73.63 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.32 Total: 27.61 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.65 Total: -9.83 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -5.27 Total: -90.24 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.33 Total: -45.80 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -76.03 2.40 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350283824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.897 kcal (2) G-P(sol) polarization free energy of solvation -76.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds