Wall clock time and date at job start Tue Mar 31 2020 12:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.21150 * 2 1 4 4 C 1.52984 * 109.22122 * 240.61323 * 2 1 3 5 5 N 1.47261 * 108.18839 * 286.39698 * 4 2 1 6 6 C 1.34784 * 121.35402 * 118.47332 * 5 4 2 7 7 O 1.21279 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99844 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47082 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93469 * 89.99539 * 9 8 6 11 11 C 1.38094 * 120.07461 * 180.02562 * 10 9 8 12 12 C 1.38878 * 119.92859 * 0.27306 * 11 10 9 13 13 O 1.35748 * 120.07147 * 179.72501 * 12 11 10 14 14 C 1.34830 * 117.00101 * 354.46447 * 13 12 11 15 15 H 1.07999 * 119.99626 * 5.05831 * 14 13 12 16 16 C 1.38650 * 120.00326 * 185.05731 * 14 13 12 17 17 N 1.31562 * 120.00209 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47103 * 89.99872 * 18 16 14 20 20 H 1.48501 * 109.47279 * 210.00176 * 18 16 14 21 21 H 1.48498 * 109.46747 * 330.00169 * 18 16 14 22 22 C 1.38878 * 119.86109 * 359.47415 * 12 11 10 23 23 C 1.38104 * 119.93072 * 0.53047 * 22 12 11 24 24 C 1.47048 * 117.29576 * 298.74052 * 5 4 2 25 25 C 1.50076 * 109.08848 * 42.38435 * 24 5 4 26 26 O 1.21283 * 118.49846 * 167.45044 * 25 24 5 27 27 N 1.33381 * 123.00839 * 347.66148 * 25 24 5 28 28 H 1.08995 * 109.46867 * 179.37954 * 1 2 3 29 29 H 1.09003 * 109.47137 * 299.38831 * 1 2 3 30 30 H 1.09007 * 109.46642 * 59.38440 * 1 2 3 31 31 H 1.08999 * 109.72559 * 166.71708 * 4 2 1 32 32 H 1.09003 * 109.75476 * 46.08946 * 4 2 1 33 33 H 1.08993 * 109.47660 * 59.99311 * 8 6 5 34 34 H 1.09004 * 109.46599 * 299.99362 * 8 6 5 35 35 H 1.08002 * 119.96329 * 0.02562 * 10 9 8 36 36 H 1.08000 * 120.04048 * 180.02562 * 11 10 9 37 37 H 0.96992 * 120.00121 * 180.02562 * 17 16 14 38 38 H 1.08003 * 120.03575 * 180.25499 * 22 12 11 39 39 H 1.07996 * 119.96455 * 179.74788 * 23 22 12 40 40 H 1.09002 * 109.57023 * 162.31257 * 24 5 4 41 41 H 1.08999 * 109.56809 * 282.67379 * 24 5 4 42 42 H 0.97003 * 117.69952 * 184.10054 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0337 -0.7088 -1.2587 5 7 1.8121 -2.1551 -1.0916 6 6 1.0073 -2.8423 -1.9263 7 8 0.4478 -2.2698 -2.8374 8 6 0.8018 -4.3218 -1.7266 9 6 -0.1349 -4.8461 -2.7843 10 6 0.3707 -5.3124 -3.9842 11 6 -0.4851 -5.7930 -4.9556 12 6 -1.8552 -5.8024 -4.7290 13 8 -2.6995 -6.2690 -5.6841 14 6 -2.1558 -6.6014 -6.8723 15 1 -1.0843 -6.5692 -7.0037 16 6 -2.9722 -6.9846 -7.9254 17 7 -2.4416 -7.3095 -9.0846 18 14 -4.8255 -7.0397 -7.6983 19 1 -5.4072 -5.7203 -8.0534 20 1 -5.4012 -8.0877 -8.5790 21 1 -5.1414 -7.3550 -6.2820 22 6 -2.3594 -5.3384 -3.5211 23 6 -1.4984 -4.8590 -2.5536 24 6 2.4997 -2.8179 0.0265 25 6 2.4110 -1.9449 1.2440 26 8 2.7149 -2.4179 2.3187 27 7 2.0094 -0.6738 1.1990 28 1 -0.3633 -1.0276 -0.0111 29 1 -0.3633 0.5043 0.8954 30 1 -0.3633 0.5234 -0.8845 31 1 3.0977 -0.5126 -1.3906 32 1 1.4831 -0.3505 -2.1286 33 1 0.3720 -4.4993 -0.7409 34 1 1.7603 -4.8353 -1.8029 35 1 1.4360 -5.3008 -4.1616 36 1 -0.0896 -6.1574 -5.8923 37 1 -3.0127 -7.5772 -9.8214 38 1 -3.4242 -5.3483 -3.3402 39 1 -1.8903 -4.4942 -1.6156 40 1 2.0244 -3.7774 0.2302 41 1 3.5473 -2.9747 -0.2305 42 1 2.0389 -0.1621 2.0226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362469530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:10 Heat of formation + Delta-G solvation = -61.972646 kcal Electronic energy + Delta-G solvation = -26076.646692 eV Core-core repulsion = 22215.780631 eV Total energy + Delta-G solvation = -3860.866061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17084 -39.60211 -38.90961 -37.25014 -36.53579 -34.86105 -32.53071 -31.90058 -31.28980 -30.23770 -28.29206 -27.80473 -26.14018 -24.79871 -23.13239 -22.10031 -21.15862 -20.15509 -19.21776 -17.89354 -17.71640 -17.55378 -17.21412 -16.75688 -16.17994 -15.48991 -15.27088 -14.80172 -14.75127 -14.39470 -14.20963 -13.97947 -13.72699 -13.61882 -13.53120 -13.01884 -12.80126 -12.69343 -12.52840 -12.40655 -12.20530 -11.94522 -11.85193 -11.66877 -11.30126 -10.93527 -10.77198 -10.71530 -10.67479 -10.14797 -9.85295 -9.65015 -9.37616 -9.03153 -8.85135 -8.23441 -7.30832 -6.40655 -4.07084 2.07641 2.11907 2.16229 2.48374 2.53265 2.87094 3.22982 3.26976 3.41320 3.96758 4.09177 4.24807 4.31832 4.49312 4.57134 4.68976 4.75090 4.86164 4.90444 5.06279 5.11133 5.14577 5.23215 5.29909 5.34264 5.39150 5.55034 5.64367 5.74244 5.79886 5.89702 6.13722 6.29181 6.33003 6.56192 6.79360 6.80416 6.94280 7.06169 7.21827 7.30893 7.62056 7.68774 7.81314 8.03781 8.05108 8.94702 9.57190 10.67041 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.002521 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.757956 B =11105.080436 C =11253.172216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 H 0.098 0.902 4 C 0.099 3.901 5 N -0.627 5.627 6 C 0.519 3.481 7 O -0.508 6.508 8 C -0.083 4.083 9 C -0.164 4.164 10 C -0.056 4.056 11 C -0.219 4.219 12 C 0.163 3.837 13 O -0.217 6.217 14 C -0.389 4.389 15 H 0.107 0.893 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.191 4.191 23 C -0.061 4.061 24 C 0.096 3.904 25 C 0.514 3.486 26 O -0.549 6.549 27 N -0.712 5.712 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.279 0.721 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 13.559 19.088 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.116 0.884 4 C -0.024 4.024 5 N -0.365 5.365 6 C 0.308 3.692 7 O -0.381 6.381 8 C -0.122 4.122 9 C -0.165 4.165 10 C -0.075 4.075 11 C -0.239 4.239 12 C 0.111 3.889 13 O -0.122 6.122 14 C -0.464 4.464 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.210 4.210 23 C -0.079 4.079 24 C -0.030 4.030 25 C 0.300 3.700 26 O -0.426 6.426 27 N -0.363 5.363 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.577 13.341 18.646 24.847 hybrid contribution -0.568 0.279 0.170 0.655 sum 9.009 13.620 18.816 24.914 Atomic orbital electron populations 1.22238 0.94202 1.03222 1.02706 1.21398 0.95397 0.96762 0.84804 0.88448 1.21970 1.01927 0.80366 0.98128 1.48289 1.48809 1.08833 1.30605 1.21072 0.77220 0.89957 0.80923 1.90758 1.46220 1.70480 1.30630 1.20494 1.01024 0.90775 0.99948 1.18665 0.93187 1.08705 0.95988 1.20557 0.98328 0.96265 0.92332 1.21223 0.93033 1.08190 1.01407 1.19123 0.89338 0.91338 0.89099 1.83570 1.35328 1.71661 1.21658 1.20774 0.95089 1.45643 0.84931 0.87607 1.24467 1.00259 0.95646 0.93629 1.69646 1.36729 1.43573 1.01846 0.86181 0.83312 0.78212 0.79200 1.19879 1.20797 1.18346 1.20145 0.99514 1.07953 0.93425 1.20388 0.92239 0.97634 0.97643 1.21817 1.00578 0.97113 0.83460 1.20248 0.76318 0.82560 0.90876 1.90820 1.49980 1.72148 1.29673 1.45516 1.65512 1.12262 1.13059 0.92082 0.92132 0.90759 0.90369 0.86750 0.88781 0.88549 0.87497 0.84934 0.91060 0.86543 0.87275 0.85915 0.87617 0.76491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.38 37.16 0.35 -0.77 16 2 C 0.12 0.66 3.87 -68.40 -0.26 0.40 16 3 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 4 C 0.10 0.69 5.89 -3.63 -0.02 0.67 16 5 N -0.63 -5.44 2.73 -174.36 -0.48 -5.92 16 6 C 0.52 6.33 7.72 -10.98 -0.08 6.25 16 7 O -0.51 -8.43 15.52 5.56 0.09 -8.34 16 8 C -0.08 -0.94 4.27 -29.04 -0.12 -1.06 16 9 C -0.16 -2.66 4.38 -104.58 -0.46 -3.12 16 10 C -0.06 -1.02 9.69 -39.61 -0.38 -1.41 16 11 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 12 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 13 O -0.22 -5.80 8.59 0.05 0.00 -5.80 16 14 C -0.39 -11.06 9.95 30.88 0.31 -10.75 16 15 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 16 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.58 13.96 55.48 0.77 -24.81 16 18 Si 0.91 21.84 28.62 -169.99 -4.86 16.98 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.19 -3.85 9.99 -39.39 -0.39 -4.24 16 23 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 24 C 0.10 0.68 6.38 -5.20 -0.03 0.65 16 25 C 0.51 4.48 7.83 -11.91 -0.09 4.38 16 26 O -0.55 -6.82 17.80 5.55 0.10 -6.72 16 27 N -0.71 -4.61 5.00 -54.91 -0.27 -4.88 16 28 H 0.06 0.56 7.97 -51.93 -0.41 0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.96 6.99 -51.93 -0.36 0.59 16 33 H 0.09 0.86 7.50 -51.93 -0.39 0.48 16 34 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 37 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.12 0.77 6.26 -51.93 -0.33 0.45 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 2.18 8.80 -40.82 -0.36 1.82 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -34.85 353.74 -7.00 -41.85 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.37 Total: 2.64 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.30 Total: -10.33 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.02 Total: -35.61 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.19 Total: -20.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.85 -7.00 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362469530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.123 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds