Wall clock time and date at job start Tue Mar 31 2020 12:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.21150 * 2 1 4 4 C 1.52984 * 109.22122 * 240.61323 * 2 1 3 5 5 N 1.47261 * 108.18839 * 286.39698 * 4 2 1 6 6 C 1.34784 * 121.35402 * 118.47332 * 5 4 2 7 7 O 1.21279 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99844 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47082 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93469 * 89.99539 * 9 8 6 11 11 C 1.38094 * 120.07461 * 180.02562 * 10 9 8 12 12 C 1.38878 * 119.92859 * 0.27306 * 11 10 9 13 13 O 1.35748 * 120.07147 * 179.72501 * 12 11 10 14 14 C 1.34830 * 117.00101 * 354.46447 * 13 12 11 15 15 H 1.07999 * 119.99626 * 5.05831 * 14 13 12 16 16 C 1.38650 * 120.00326 * 185.05731 * 14 13 12 17 17 N 1.31562 * 120.00209 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47103 * 89.99872 * 18 16 14 20 20 H 1.48501 * 109.47279 * 210.00176 * 18 16 14 21 21 H 1.48498 * 109.46747 * 330.00169 * 18 16 14 22 22 C 1.38878 * 119.86109 * 359.47415 * 12 11 10 23 23 C 1.38104 * 119.93072 * 0.53047 * 22 12 11 24 24 C 1.47048 * 117.29576 * 298.74052 * 5 4 2 25 25 C 1.50076 * 109.08848 * 42.38435 * 24 5 4 26 26 O 1.21283 * 118.49846 * 167.45044 * 25 24 5 27 27 N 1.33381 * 123.00839 * 347.66148 * 25 24 5 28 28 H 1.08995 * 109.46867 * 179.37954 * 1 2 3 29 29 H 1.09003 * 109.47137 * 299.38831 * 1 2 3 30 30 H 1.09007 * 109.46642 * 59.38440 * 1 2 3 31 31 H 1.08999 * 109.72559 * 166.71708 * 4 2 1 32 32 H 1.09003 * 109.75476 * 46.08946 * 4 2 1 33 33 H 1.08993 * 109.47660 * 59.99311 * 8 6 5 34 34 H 1.09004 * 109.46599 * 299.99362 * 8 6 5 35 35 H 1.08002 * 119.96329 * 0.02562 * 10 9 8 36 36 H 1.08000 * 120.04048 * 180.02562 * 11 10 9 37 37 H 0.96992 * 120.00121 * 180.02562 * 17 16 14 38 38 H 1.08003 * 120.03575 * 180.25499 * 22 12 11 39 39 H 1.07996 * 119.96455 * 179.74788 * 23 22 12 40 40 H 1.09002 * 109.57023 * 162.31257 * 24 5 4 41 41 H 1.08999 * 109.56809 * 282.67379 * 24 5 4 42 42 H 0.97003 * 117.69952 * 184.10054 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0337 -0.7088 -1.2587 5 7 1.8121 -2.1551 -1.0916 6 6 1.0073 -2.8423 -1.9263 7 8 0.4478 -2.2698 -2.8374 8 6 0.8018 -4.3218 -1.7266 9 6 -0.1349 -4.8461 -2.7843 10 6 0.3707 -5.3124 -3.9842 11 6 -0.4851 -5.7930 -4.9556 12 6 -1.8552 -5.8024 -4.7290 13 8 -2.6995 -6.2690 -5.6841 14 6 -2.1558 -6.6014 -6.8723 15 1 -1.0843 -6.5692 -7.0037 16 6 -2.9722 -6.9846 -7.9254 17 7 -2.4416 -7.3095 -9.0846 18 14 -4.8255 -7.0397 -7.6983 19 1 -5.4072 -5.7203 -8.0534 20 1 -5.4012 -8.0877 -8.5790 21 1 -5.1414 -7.3550 -6.2820 22 6 -2.3594 -5.3384 -3.5211 23 6 -1.4984 -4.8590 -2.5536 24 6 2.4997 -2.8179 0.0265 25 6 2.4110 -1.9449 1.2440 26 8 2.7149 -2.4179 2.3187 27 7 2.0094 -0.6738 1.1990 28 1 -0.3633 -1.0276 -0.0111 29 1 -0.3633 0.5043 0.8954 30 1 -0.3633 0.5234 -0.8845 31 1 3.0977 -0.5126 -1.3906 32 1 1.4831 -0.3505 -2.1286 33 1 0.3720 -4.4993 -0.7409 34 1 1.7603 -4.8353 -1.8029 35 1 1.4360 -5.3008 -4.1616 36 1 -0.0896 -6.1574 -5.8923 37 1 -3.0127 -7.5772 -9.8214 38 1 -3.4242 -5.3483 -3.3402 39 1 -1.8903 -4.4942 -1.6156 40 1 2.0244 -3.7774 0.2302 41 1 3.5473 -2.9747 -0.2305 42 1 2.0389 -0.1621 2.0226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362469530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:09 Heat of formation + Delta-G solvation = -87.019036 kcal Electronic energy + Delta-G solvation = -26077.732785 eV Core-core repulsion = 22215.780631 eV Total energy + Delta-G solvation = -3861.952154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89006 -40.93668 -40.15652 -38.43941 -37.69652 -35.59626 -34.51492 -33.06868 -32.09792 -31.79930 -28.99158 -28.87472 -27.47157 -26.31018 -23.77436 -23.68005 -22.45586 -21.16664 -19.86367 -19.78513 -19.10599 -18.50256 -18.17729 -17.47276 -16.97337 -16.62958 -16.47174 -16.00342 -15.86951 -15.67086 -15.57384 -15.26071 -14.98257 -14.91225 -14.46727 -14.31549 -14.12259 -14.05315 -13.67693 -13.40317 -13.04169 -13.02685 -12.86850 -12.60399 -12.45809 -12.41514 -12.31567 -12.25790 -11.92642 -11.50866 -11.27541 -10.94488 -10.77947 -10.23766 -9.78583 -9.74728 -8.97968 -8.50247 -6.22663 0.59233 0.61371 1.30489 1.34917 1.46409 1.51422 1.61734 1.76087 2.27906 2.28021 2.76404 3.03697 3.17355 3.39947 3.56122 3.72914 3.89948 4.00293 4.03193 4.11164 4.18032 4.29228 4.43811 4.45409 4.57630 4.64958 4.65608 4.73445 4.81007 4.81933 4.85844 4.98174 5.20570 5.25772 5.28535 5.37826 5.57285 5.73942 5.76791 5.80175 5.91206 6.15580 6.23332 6.28234 6.84190 7.08194 7.16314 7.59087 8.61592 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.002521 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.757956 B =11105.080436 C =11253.172216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 H 0.132 0.868 4 C 0.093 3.907 5 N -0.617 5.617 6 C 0.522 3.478 7 O -0.562 6.562 8 C -0.085 4.085 9 C -0.137 4.137 10 C -0.062 4.062 11 C -0.238 4.238 12 C 0.119 3.881 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.194 4.194 23 C -0.059 4.059 24 C 0.095 3.905 25 C 0.513 3.487 26 O -0.590 6.590 27 N -0.703 5.703 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 15.160 22.478 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.149 0.851 4 C -0.030 4.030 5 N -0.353 5.353 6 C 0.312 3.688 7 O -0.440 6.440 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.080 4.080 11 C -0.257 4.257 12 C 0.070 3.930 13 O -0.154 6.154 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.213 4.213 23 C -0.077 4.077 24 C -0.030 4.030 25 C 0.300 3.700 26 O -0.471 6.471 27 N -0.354 5.354 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 10.540 14.988 22.099 28.707 hybrid contribution -0.600 -0.015 -0.558 0.820 sum 9.940 14.973 21.540 28.053 Atomic orbital electron populations 1.22218 0.95180 1.01671 1.03128 1.21458 0.94432 0.98104 0.83578 0.85077 1.22161 1.03196 0.79306 0.98307 1.48196 1.47506 1.09597 1.29991 1.21021 0.77063 0.90103 0.80626 1.90765 1.48641 1.71494 1.33051 1.20640 1.01694 0.90536 0.99531 1.19240 0.93962 1.04674 0.95923 1.20903 0.99349 0.95520 0.92188 1.21254 0.93357 1.09380 1.01717 1.19676 0.89975 0.93475 0.89852 1.83509 1.35938 1.74405 1.21551 1.20713 0.94291 1.46166 0.86387 0.90239 1.25287 1.04886 0.95484 0.93238 1.69729 1.38409 1.45629 1.02751 0.85214 0.77697 0.78772 0.78997 1.19230 1.19006 1.18662 1.20483 1.00818 1.07277 0.92694 1.20904 0.92406 0.96099 0.98290 1.22024 1.01969 0.97027 0.81966 1.20481 0.75764 0.83044 0.90688 1.90815 1.52137 1.73047 1.31110 1.45512 1.64292 1.11817 1.13729 0.94524 0.91061 0.91079 0.88082 0.88271 0.85413 0.85179 0.84702 0.87543 0.90566 0.85540 0.83279 0.84574 0.85121 0.75768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.38 71.98 0.68 -1.13 16 2 C 0.13 0.95 3.87 45.15 0.17 1.12 16 3 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 4 C 0.09 0.99 5.89 86.23 0.51 1.50 16 5 N -0.62 -8.38 2.73 -823.95 -2.25 -10.63 16 6 C 0.52 10.94 7.72 87.66 0.68 11.61 16 7 O -0.56 -17.62 15.52 -3.03 -0.05 -17.66 16 8 C -0.08 -1.52 4.27 29.10 0.12 -1.40 16 9 C -0.14 -4.02 4.38 -19.84 -0.09 -4.11 16 10 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 11 C -0.24 -10.82 9.17 22.39 0.21 -10.62 16 12 C 0.12 5.78 6.65 22.58 0.15 5.93 16 13 O -0.25 -13.83 8.59 -22.72 -0.20 -14.03 16 14 C -0.40 -24.21 9.95 67.92 0.68 -23.53 16 15 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 16 C 0.01 0.54 5.49 84.83 0.47 1.01 16 17 N -0.92 -56.28 13.96 21.61 0.30 -55.98 16 18 Si 0.97 46.47 28.62 68.60 1.96 48.44 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.19 -7.69 9.99 22.39 0.22 -7.47 16 23 C -0.06 -1.86 9.69 22.25 0.22 -1.64 16 24 C 0.10 0.92 6.38 85.33 0.54 1.47 16 25 C 0.51 7.21 7.83 87.68 0.69 7.89 16 26 O -0.59 -13.19 17.80 -3.04 -0.05 -13.25 16 27 N -0.70 -6.70 5.00 -446.82 -2.23 -8.94 16 28 H 0.04 0.59 7.97 -2.39 -0.02 0.57 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.46 6.99 -2.39 -0.02 1.45 16 33 H 0.13 1.55 7.50 -2.39 -0.02 1.53 16 34 H 0.13 1.57 8.08 -2.38 -0.02 1.56 16 35 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.11 5.32 5.64 -2.91 -0.02 5.31 16 37 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 38 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.14 1.00 6.26 -2.39 -0.01 0.99 16 41 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.41 3.14 8.80 -92.71 -0.82 2.33 16 Total: -1.00 -82.24 353.74 3.18 -79.05 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.25 Total: 14.30 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 5.45 Total: -21.29 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -4.18 Total: -75.55 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.30 Total: -44.94 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.96 Total: 48.44 kcal Total: -82.24 3.18 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362469530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.966 kcal (2) G-P(sol) polarization free energy of solvation -82.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds