Wall clock time and date at job start Tue Mar 31 2020 12:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.17871 * 2 1 4 4 C 1.52992 * 109.21596 * 119.36204 * 2 1 3 5 5 N 1.47263 * 108.18313 * 167.05766 * 4 2 1 6 6 C 1.34776 * 121.35304 * 118.52401 * 5 4 2 7 7 O 1.21280 * 119.99948 * 359.97079 * 6 5 4 8 8 C 1.50700 * 120.00151 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93113 * 269.72460 * 9 8 6 11 11 C 1.38094 * 120.06927 * 179.72701 * 10 9 8 12 12 C 1.38878 * 119.92889 * 0.54608 * 11 10 9 13 13 O 1.35750 * 120.06804 * 179.74867 * 12 11 10 14 14 C 1.34827 * 117.00328 * 174.44587 * 13 12 11 15 15 H 1.07999 * 119.99647 * 5.05177 * 14 13 12 16 16 C 1.38650 * 120.00431 * 185.06128 * 14 13 12 17 17 N 1.31559 * 120.00234 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46771 * 90.00197 * 18 16 14 20 20 H 1.48494 * 109.47511 * 210.00517 * 18 16 14 21 21 H 1.48504 * 109.46725 * 330.00634 * 18 16 14 22 22 C 1.38872 * 119.86622 * 359.72603 * 12 11 10 23 23 C 1.38100 * 119.93002 * 0.02562 * 22 12 11 24 24 C 1.47048 * 117.29335 * 298.49024 * 5 4 2 25 25 C 1.50433 * 108.88972 * 42.74760 * 24 5 4 26 26 O 1.21287 * 118.49270 * 167.31317 * 25 24 5 27 27 N 1.33385 * 123.02319 * 347.28206 * 25 24 5 28 28 H 1.08996 * 109.47297 * 179.35899 * 1 2 3 29 29 H 1.09006 * 109.46507 * 299.35475 * 1 2 3 30 30 H 1.08996 * 109.46846 * 59.35050 * 1 2 3 31 31 H 1.09006 * 109.71793 * 47.38210 * 4 2 1 32 32 H 1.08994 * 109.71976 * 286.73130 * 4 2 1 33 33 H 1.09007 * 109.46646 * 299.99500 * 8 6 5 34 34 H 1.08995 * 109.47291 * 59.99031 * 8 6 5 35 35 H 1.08001 * 119.95961 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.03718 * 180.26651 * 11 10 9 37 37 H 0.97006 * 119.99971 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.04138 * 180.02562 * 22 12 11 39 39 H 1.08002 * 119.96827 * 180.02562 * 23 22 12 40 40 H 1.08995 * 109.57340 * 282.91566 * 24 5 4 41 41 H 1.09006 * 109.66124 * 162.61908 * 24 5 4 42 42 H 0.96998 * 117.70379 * 184.03682 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0294 0.0000 4 6 2.0336 -0.7084 1.2591 5 7 3.4724 -0.9742 1.0925 6 6 4.3855 -0.4405 1.9280 7 8 4.0282 0.2754 2.8394 8 6 5.8504 -0.7333 1.7297 9 6 6.6528 -0.0214 2.7882 10 6 7.1195 1.2595 2.5553 11 6 7.8502 1.9167 3.5255 12 6 8.1259 1.2857 4.7315 13 8 8.8483 1.9271 5.6852 14 6 8.9820 1.3050 6.8738 15 1 8.5946 0.3057 7.0068 16 6 9.6166 1.9481 7.9255 17 7 9.7466 1.3412 9.0855 18 14 10.2871 3.6764 7.6955 19 1 9.2378 4.6656 8.0501 20 1 11.4678 3.8705 8.5749 21 1 10.6885 3.8670 6.2785 22 6 7.6607 -0.0027 4.9602 23 6 6.9261 -0.6527 3.9880 24 6 3.8724 -1.8461 -0.0219 25 6 3.0783 -1.4709 -1.2432 26 8 3.4255 -1.9134 -2.3177 27 7 2.0093 -0.6743 -1.1987 28 1 -0.3634 -1.0275 -0.0115 29 1 -0.3632 0.5038 0.8958 30 1 -0.3633 0.5239 -0.8841 31 1 1.4985 -1.6489 1.3908 32 1 1.8757 -0.0700 2.1283 33 1 6.0197 -1.8075 1.8059 34 1 6.1602 -0.3858 0.7441 35 1 6.9088 1.7477 1.6153 36 1 8.2107 2.9185 3.3448 37 1 10.1909 1.7910 9.8211 38 1 7.8731 -0.4959 5.8972 39 1 6.5637 -1.6545 4.1654 40 1 3.6731 -2.8857 0.2380 41 1 4.9358 -1.7180 -0.2245 42 1 1.5192 -0.5308 -2.0234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362469555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:15 Heat of formation + Delta-G solvation = -63.477615 kcal Electronic energy + Delta-G solvation = -25819.800069 eV Core-core repulsion = 21958.868748 eV Total energy + Delta-G solvation = -3860.931322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.11122 -39.61016 -38.90726 -37.26107 -36.55958 -34.97500 -32.52790 -31.91860 -31.42187 -30.23626 -28.37211 -27.79900 -26.02542 -24.73516 -22.94834 -22.09910 -21.20186 -20.35070 -19.22653 -17.89647 -17.86075 -17.52997 -17.17393 -16.59661 -16.17251 -15.86661 -15.37637 -14.82219 -14.66387 -14.33946 -14.16164 -13.86479 -13.77662 -13.57098 -13.47145 -13.08060 -12.84509 -12.71056 -12.61793 -12.49488 -12.20214 -12.08703 -11.95094 -11.69354 -11.30272 -10.93754 -10.77208 -10.71832 -10.67131 -10.14639 -9.86485 -9.64349 -9.37389 -9.04326 -8.84979 -8.23246 -7.30695 -6.40479 -4.06888 2.07528 2.12438 2.16439 2.47276 2.52577 2.84508 3.23136 3.27147 3.41489 3.92757 4.10699 4.24986 4.30036 4.43386 4.54230 4.65658 4.72888 4.86022 4.89342 4.99107 5.08971 5.11476 5.13671 5.18563 5.33358 5.40222 5.54469 5.55948 5.64578 5.74590 5.88565 6.13936 6.27789 6.33208 6.56380 6.79540 6.79898 6.93558 7.06058 7.22013 7.31043 7.62211 7.68564 7.81511 8.02633 8.05167 8.94886 9.57401 10.67173 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002425 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.624467 B =11545.807885 C =11765.025072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.081 0.919 4 C 0.100 3.900 5 N -0.630 5.630 6 C 0.519 3.481 7 O -0.509 6.509 8 C -0.082 4.082 9 C -0.164 4.164 10 C -0.061 4.061 11 C -0.191 4.191 12 C 0.163 3.837 13 O -0.217 6.217 14 C -0.389 4.389 15 H 0.107 0.893 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.219 4.219 23 C -0.057 4.057 24 C 0.097 3.903 25 C 0.513 3.487 26 O -0.549 6.549 27 N -0.712 5.712 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.279 0.721 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 -5.439 -19.102 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.099 0.901 4 C -0.023 4.023 5 N -0.368 5.368 6 C 0.308 3.692 7 O -0.382 6.382 8 C -0.122 4.122 9 C -0.166 4.166 10 C -0.079 4.079 11 C -0.210 4.210 12 C 0.111 3.889 13 O -0.122 6.122 14 C -0.464 4.464 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.238 4.238 23 C -0.075 4.075 24 C -0.029 4.029 25 C 0.299 3.701 26 O -0.426 6.426 27 N -0.365 5.365 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.414 -5.065 -18.658 25.362 hybrid contribution -0.081 0.616 -0.167 0.643 sum -16.495 -4.449 -18.825 25.422 Atomic orbital electron populations 1.22129 0.93165 1.03265 1.03606 1.21388 0.95208 0.97014 0.84843 0.90073 1.21996 0.80684 1.01580 0.98044 1.48335 1.06788 1.50801 1.30844 1.21102 0.88272 0.78945 0.80871 1.90759 1.81073 1.35730 1.30627 1.20494 0.89651 1.02072 0.99986 1.18670 1.05695 0.96218 0.95983 1.20394 0.96442 0.93481 0.97620 1.20145 1.06638 1.00796 0.93427 1.19122 0.89692 0.90967 0.89142 1.83569 1.61578 1.45363 1.21707 1.20774 1.39110 1.01617 0.84939 0.87606 1.24467 0.96304 0.99613 0.93629 1.69650 1.41819 1.38453 1.01865 0.86180 0.78628 0.82886 0.79202 1.19880 1.20799 1.18349 1.21223 1.05191 0.96047 1.01374 1.20561 0.96204 0.98392 0.92342 1.21887 1.01337 0.96262 0.83420 1.20343 0.80759 0.78095 0.90897 1.90819 1.68013 1.54080 1.29693 1.45593 1.29623 1.48403 1.12838 0.91545 0.90230 0.91501 0.90325 0.86821 0.88517 0.88711 0.87238 0.86529 0.91065 0.84927 0.87487 0.87599 0.85866 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 9.33 37.16 0.35 -0.22 16 2 C 0.12 0.69 3.85 -68.39 -0.26 0.43 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.10 0.72 5.83 -3.63 -0.02 0.70 16 5 N -0.63 -5.64 2.98 -174.16 -0.52 -6.15 16 6 C 0.52 6.47 7.72 -10.99 -0.08 6.38 16 7 O -0.51 -8.63 15.52 5.56 0.09 -8.54 16 8 C -0.08 -0.94 4.27 -29.03 -0.12 -1.07 16 9 C -0.16 -2.68 4.38 -104.57 -0.46 -3.14 16 10 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 11 C -0.19 -3.85 9.99 -39.40 -0.39 -4.25 16 12 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 13 O -0.22 -5.81 8.59 0.06 0.00 -5.81 16 14 C -0.39 -11.07 9.95 30.88 0.31 -10.76 16 15 H 0.11 3.07 5.44 -52.49 -0.29 2.79 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.59 13.96 55.48 0.77 -24.82 16 18 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 23 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 24 C 0.10 0.70 6.40 -5.02 -0.03 0.66 16 25 C 0.51 4.56 7.84 -11.73 -0.09 4.46 16 26 O -0.55 -6.87 17.80 5.55 0.10 -6.77 16 27 N -0.71 -4.79 5.12 -54.78 -0.28 -5.07 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.11 0.97 7.06 -51.93 -0.37 0.61 16 33 H 0.10 0.88 8.08 -51.92 -0.42 0.46 16 34 H 0.09 0.88 7.51 -51.93 -0.39 0.49 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.13 3.04 5.64 -52.49 -0.30 2.74 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.12 0.78 6.27 -51.93 -0.33 0.45 16 42 H 0.40 2.30 8.62 -40.82 -0.35 1.95 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -35.00 354.04 -7.04 -42.04 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.37 Total: 2.33 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.30 Total: -9.54 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.02 Total: -36.04 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.19 Total: -21.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.00 -7.04 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362469555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.437 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds