Wall clock time and date at job start Tue Mar 31 2020 12:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.17871 * 2 1 4 4 C 1.52992 * 109.21596 * 119.36204 * 2 1 3 5 5 N 1.47263 * 108.18313 * 167.05766 * 4 2 1 6 6 C 1.34776 * 121.35304 * 118.52401 * 5 4 2 7 7 O 1.21280 * 119.99948 * 359.97079 * 6 5 4 8 8 C 1.50700 * 120.00151 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93113 * 269.72460 * 9 8 6 11 11 C 1.38094 * 120.06927 * 179.72701 * 10 9 8 12 12 C 1.38878 * 119.92889 * 0.54608 * 11 10 9 13 13 O 1.35750 * 120.06804 * 179.74867 * 12 11 10 14 14 C 1.34827 * 117.00328 * 174.44587 * 13 12 11 15 15 H 1.07999 * 119.99647 * 5.05177 * 14 13 12 16 16 C 1.38650 * 120.00431 * 185.06128 * 14 13 12 17 17 N 1.31559 * 120.00234 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46771 * 90.00197 * 18 16 14 20 20 H 1.48494 * 109.47511 * 210.00517 * 18 16 14 21 21 H 1.48504 * 109.46725 * 330.00634 * 18 16 14 22 22 C 1.38872 * 119.86622 * 359.72603 * 12 11 10 23 23 C 1.38100 * 119.93002 * 0.02562 * 22 12 11 24 24 C 1.47048 * 117.29335 * 298.49024 * 5 4 2 25 25 C 1.50433 * 108.88972 * 42.74760 * 24 5 4 26 26 O 1.21287 * 118.49270 * 167.31317 * 25 24 5 27 27 N 1.33385 * 123.02319 * 347.28206 * 25 24 5 28 28 H 1.08996 * 109.47297 * 179.35899 * 1 2 3 29 29 H 1.09006 * 109.46507 * 299.35475 * 1 2 3 30 30 H 1.08996 * 109.46846 * 59.35050 * 1 2 3 31 31 H 1.09006 * 109.71793 * 47.38210 * 4 2 1 32 32 H 1.08994 * 109.71976 * 286.73130 * 4 2 1 33 33 H 1.09007 * 109.46646 * 299.99500 * 8 6 5 34 34 H 1.08995 * 109.47291 * 59.99031 * 8 6 5 35 35 H 1.08001 * 119.95961 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.03718 * 180.26651 * 11 10 9 37 37 H 0.97006 * 119.99971 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.04138 * 180.02562 * 22 12 11 39 39 H 1.08002 * 119.96827 * 180.02562 * 23 22 12 40 40 H 1.08995 * 109.57340 * 282.91566 * 24 5 4 41 41 H 1.09006 * 109.66124 * 162.61908 * 24 5 4 42 42 H 0.96998 * 117.70379 * 184.03682 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0294 0.0000 4 6 2.0336 -0.7084 1.2591 5 7 3.4724 -0.9742 1.0925 6 6 4.3855 -0.4405 1.9280 7 8 4.0282 0.2754 2.8394 8 6 5.8504 -0.7333 1.7297 9 6 6.6528 -0.0214 2.7882 10 6 7.1195 1.2595 2.5553 11 6 7.8502 1.9167 3.5255 12 6 8.1259 1.2857 4.7315 13 8 8.8483 1.9271 5.6852 14 6 8.9820 1.3050 6.8738 15 1 8.5946 0.3057 7.0068 16 6 9.6166 1.9481 7.9255 17 7 9.7466 1.3412 9.0855 18 14 10.2871 3.6764 7.6955 19 1 9.2378 4.6656 8.0501 20 1 11.4678 3.8705 8.5749 21 1 10.6885 3.8670 6.2785 22 6 7.6607 -0.0027 4.9602 23 6 6.9261 -0.6527 3.9880 24 6 3.8724 -1.8461 -0.0219 25 6 3.0783 -1.4709 -1.2432 26 8 3.4255 -1.9134 -2.3177 27 7 2.0093 -0.6743 -1.1987 28 1 -0.3634 -1.0275 -0.0115 29 1 -0.3632 0.5038 0.8958 30 1 -0.3633 0.5239 -0.8841 31 1 1.4985 -1.6489 1.3908 32 1 1.8757 -0.0700 2.1283 33 1 6.0197 -1.8075 1.8059 34 1 6.1602 -0.3858 0.7441 35 1 6.9088 1.7477 1.6153 36 1 8.2107 2.9185 3.3448 37 1 10.1909 1.7910 9.8211 38 1 7.8731 -0.4959 5.8972 39 1 6.5637 -1.6545 4.1654 40 1 3.6731 -2.8857 0.2380 41 1 4.9358 -1.7180 -0.2245 42 1 1.5192 -0.5308 -2.0234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362469555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:14 Heat of formation + Delta-G solvation = -88.762914 kcal Electronic energy + Delta-G solvation = -25820.896522 eV Core-core repulsion = 21958.868748 eV Total energy + Delta-G solvation = -3862.027774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85102 -40.93722 -40.17972 -38.42959 -37.72919 -35.72288 -34.51490 -33.06813 -32.20538 -31.79886 -29.02043 -28.90375 -27.40931 -26.17363 -23.70622 -23.49388 -22.46660 -21.34900 -19.96808 -19.79433 -19.10477 -18.62225 -18.14754 -17.33931 -16.95038 -16.73061 -16.48917 -16.31933 -15.86245 -15.71885 -15.59074 -15.27093 -15.04291 -14.69102 -14.39053 -14.25039 -14.08171 -14.03281 -13.55326 -13.43845 -13.09294 -13.03431 -12.85746 -12.65129 -12.45480 -12.43867 -12.39934 -12.27081 -11.92561 -11.51950 -11.27344 -10.95641 -10.80449 -10.24719 -9.79094 -9.77173 -8.97969 -8.50135 -6.22542 0.59463 0.61267 1.30603 1.35022 1.45365 1.51535 1.58398 1.73807 2.23822 2.28068 2.76375 3.03896 3.17329 3.35362 3.57106 3.71288 3.88978 3.99040 4.04001 4.10741 4.15776 4.22114 4.42810 4.44365 4.56342 4.58914 4.65428 4.74017 4.81454 4.84699 4.98044 5.01810 5.17307 5.26058 5.29735 5.37902 5.57384 5.72907 5.74072 5.80307 5.91270 6.13368 6.21178 6.27870 6.84291 7.05619 7.13296 7.59219 8.61644 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002425 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.624467 B =11545.807885 C =11765.025072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.074 0.926 4 C 0.095 3.905 5 N -0.620 5.620 6 C 0.521 3.479 7 O -0.564 6.564 8 C -0.084 4.084 9 C -0.138 4.138 10 C -0.059 4.059 11 C -0.194 4.194 12 C 0.119 3.881 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.062 4.062 24 C 0.096 3.904 25 C 0.512 3.488 26 O -0.589 6.589 27 N -0.704 5.704 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.127 0.873 37 H 0.285 0.715 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -5.723 -22.467 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.092 0.908 4 C -0.028 4.028 5 N -0.356 5.356 6 C 0.311 3.689 7 O -0.442 6.442 8 C -0.123 4.123 9 C -0.139 4.139 10 C -0.077 4.077 11 C -0.213 4.213 12 C 0.070 3.930 13 O -0.154 6.154 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.257 4.257 23 C -0.080 4.080 24 C -0.029 4.029 25 C 0.299 3.701 26 O -0.470 6.470 27 N -0.356 5.356 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.085 -5.377 -22.085 29.047 hybrid contribution 0.143 0.521 0.555 0.775 sum -17.942 -4.855 -21.530 28.443 Atomic orbital electron populations 1.22096 0.91196 1.03905 1.04368 1.21371 0.96649 0.96121 0.83678 0.90768 1.22161 0.79890 1.02516 0.98211 1.48258 1.07095 1.49938 1.30278 1.21096 0.88884 0.78349 0.80525 1.90766 1.81906 1.38427 1.33077 1.20644 0.88288 1.03729 0.99634 1.19250 1.03025 0.95674 0.95936 1.20920 0.94729 0.93773 0.98299 1.20488 1.06583 1.01489 0.92707 1.19681 0.91352 0.92077 0.89907 1.83509 1.64310 1.45986 1.21596 1.20714 1.39409 1.01045 0.86397 0.90236 1.25290 0.96753 1.03638 0.93243 1.69733 1.43711 1.40289 1.02769 0.85211 0.78499 0.77952 0.78998 1.19239 1.19005 1.18660 1.21254 1.06644 0.96129 1.01687 1.20910 0.95214 0.99655 0.92200 1.22106 1.01954 0.97004 0.81821 1.20598 0.80937 0.77806 0.90778 1.90814 1.69231 1.55850 1.31108 1.45618 1.29004 1.47483 1.13452 0.90961 0.89699 0.90549 0.88338 0.88297 0.85072 0.85184 0.83154 0.85510 0.90571 0.87544 0.84687 0.85097 0.84297 0.75877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.33 71.98 0.67 0.04 16 2 C 0.13 1.09 3.85 45.15 0.17 1.27 16 3 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.09 1.10 5.83 86.23 0.50 1.60 16 5 N -0.62 -8.76 2.98 -823.29 -2.45 -11.21 16 6 C 0.52 11.10 7.72 87.66 0.68 11.78 16 7 O -0.56 -18.01 15.52 -3.03 -0.05 -18.05 16 8 C -0.08 -1.49 4.27 29.10 0.12 -1.37 16 9 C -0.14 -4.04 4.38 -19.83 -0.09 -4.13 16 10 C -0.06 -1.86 9.69 22.25 0.22 -1.64 16 11 C -0.19 -7.69 9.99 22.39 0.22 -7.46 16 12 C 0.12 5.76 6.65 22.58 0.15 5.91 16 13 O -0.25 -13.83 8.59 -22.72 -0.20 -14.03 16 14 C -0.40 -24.21 9.95 67.92 0.68 -23.54 16 15 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 16 C 0.01 0.53 5.49 84.83 0.47 0.99 16 17 N -0.92 -56.27 13.96 21.61 0.30 -55.97 16 18 Si 0.97 46.48 28.62 68.60 1.96 48.44 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.24 -10.83 9.17 22.39 0.21 -10.62 16 23 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 24 C 0.10 0.95 6.40 85.44 0.55 1.50 16 25 C 0.51 7.44 7.84 87.79 0.69 8.13 16 26 O -0.59 -13.33 17.80 -3.05 -0.05 -13.38 16 27 N -0.70 -7.40 5.12 -446.40 -2.29 -9.69 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 29 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.10 0.78 8.09 -2.38 -0.02 0.76 16 32 H 0.10 1.53 7.06 -2.39 -0.02 1.51 16 33 H 0.13 1.56 8.08 -2.38 -0.02 1.54 16 34 H 0.13 1.53 7.51 -2.39 -0.02 1.51 16 35 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.28 15.86 8.31 -92.70 -0.77 15.09 16 38 H 0.11 5.32 5.64 -2.91 -0.02 5.31 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 0.99 6.27 -2.38 -0.01 0.98 16 42 H 0.40 3.60 8.62 -92.71 -0.80 2.80 16 Total: -1.00 -82.10 354.04 2.94 -79.15 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.26 Total: 14.22 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 5.45 Total: -19.49 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -4.44 Total: -76.86 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.30 Total: -45.46 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.96 Total: 48.44 kcal Total: -82.10 2.94 -79.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362469555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.609 kcal (2) G-P(sol) polarization free energy of solvation -82.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds