Wall clock time and date at job start Tue Mar 31 2020 12:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.21208 * 2 1 4 4 C 1.52990 * 109.18433 * 240.63817 * 2 1 3 5 5 N 1.47265 * 108.18683 * 286.41891 * 4 2 1 6 6 C 1.34781 * 121.35181 * 118.47728 * 5 4 2 7 7 O 1.21273 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99565 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.46859 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96330 * 269.72706 * 9 8 6 11 11 C 1.38282 * 120.13719 * 179.76699 * 10 9 8 12 12 C 1.38118 * 120.06632 * 0.50716 * 11 10 9 13 13 C 1.38865 * 119.93197 * 359.74460 * 12 11 10 14 14 O 1.35755 * 120.06902 * 180.02562 * 13 12 11 15 15 C 1.34829 * 116.99805 * 354.44196 * 14 13 12 16 16 H 1.07999 * 120.00328 * 5.06199 * 15 14 13 17 17 C 1.38659 * 119.99651 * 185.05333 * 15 14 13 18 18 N 1.31555 * 119.99684 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47093 * 90.00079 * 19 17 15 21 21 H 1.48502 * 109.46642 * 209.99640 * 19 17 15 22 22 H 1.48496 * 109.47233 * 329.99548 * 19 17 15 23 23 C 1.38068 * 119.96633 * 89.99786 * 9 8 6 24 24 C 1.47044 * 117.29296 * 298.49276 * 5 4 2 25 25 C 1.50400 * 108.92859 * 42.52476 * 24 5 4 26 26 O 1.21286 * 118.46675 * 167.51989 * 25 24 5 27 27 N 1.33379 * 123.04723 * 347.77541 * 25 24 5 28 28 H 1.09002 * 109.47418 * 300.62060 * 1 2 3 29 29 H 1.09002 * 109.47271 * 60.62424 * 1 2 3 30 30 H 1.09002 * 109.47704 * 180.61718 * 1 2 3 31 31 H 1.09011 * 109.71682 * 46.08856 * 4 2 1 32 32 H 1.08998 * 109.72448 * 166.69813 * 4 2 1 33 33 H 1.08994 * 109.46839 * 299.99513 * 8 6 5 34 34 H 1.09000 * 109.46826 * 59.99749 * 8 6 5 35 35 H 1.07997 * 119.93374 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96610 * 180.22526 * 11 10 9 37 37 H 1.08002 * 120.03559 * 179.72342 * 12 11 10 38 38 H 0.97004 * 119.99602 * 180.02562 * 18 17 15 39 39 H 1.08006 * 120.03633 * 0.02562 * 23 9 8 40 40 H 1.09002 * 109.57208 * 162.56298 * 24 5 4 41 41 H 1.09005 * 109.57060 * 282.91784 * 24 5 4 42 42 H 0.97005 * 117.71083 * 184.04587 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0327 -0.7085 -1.2593 5 7 1.8102 -2.1547 -1.0929 6 6 1.0047 -2.8409 -1.9277 7 8 0.4454 -2.2677 -2.8383 8 6 0.7993 -4.3207 -1.7295 9 6 -0.1383 -4.8438 -2.7870 10 6 -1.5016 -4.8632 -2.5533 11 6 -2.3655 -5.3378 -3.5231 12 6 -1.8685 -5.8039 -4.7245 13 6 -0.5000 -5.7906 -4.9601 14 8 -0.0085 -6.2476 -6.1401 15 6 -0.8890 -6.8068 -6.9945 16 1 -1.9438 -6.8019 -6.7628 17 6 -0.4401 -7.3881 -8.1706 18 7 -1.2993 -7.9333 -9.0044 19 14 1.3845 -7.3970 -8.5710 20 1 2.0067 -8.6266 -8.0176 21 1 1.5680 -7.3694 -10.0443 22 1 2.0291 -6.2021 -7.9694 23 6 0.3647 -5.3083 -3.9860 24 6 2.5022 -2.8195 0.0212 25 6 2.4149 -1.9447 1.2415 26 8 2.7233 -2.4174 2.3150 27 7 2.0093 -0.6748 1.1985 28 1 -0.3634 0.5234 0.8844 29 1 -0.3634 0.5041 -0.8955 30 1 -0.3634 -1.0276 0.0111 31 1 1.4813 -0.3492 -2.1284 32 1 3.0966 -0.5122 -1.3919 33 1 1.7576 -4.8341 -1.8069 34 1 0.3701 -4.4990 -0.7435 35 1 -1.8923 -4.5037 -1.6129 36 1 -3.4297 -5.3483 -3.3391 37 1 -2.5434 -6.1787 -5.4798 38 1 -0.9852 -8.3403 -9.8270 39 1 1.4296 -5.2973 -4.1660 40 1 2.0296 -3.7808 0.2231 41 1 3.5495 -2.9733 -0.2391 42 1 2.0394 -0.1635 2.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362985783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:19 Heat of formation + Delta-G solvation = -61.582942 kcal Electronic energy + Delta-G solvation = -26220.943005 eV Core-core repulsion = 22360.093843 eV Total energy + Delta-G solvation = -3860.849162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17423 -39.62709 -38.89992 -37.23882 -36.52856 -34.87827 -32.47107 -32.23221 -31.48677 -29.47830 -28.29366 -28.00065 -26.12220 -25.11388 -23.17877 -21.84258 -21.21722 -20.22050 -19.24787 -17.77963 -17.74234 -17.53717 -17.06659 -16.64850 -16.19696 -15.48053 -15.25936 -15.16762 -14.75892 -14.55414 -14.24015 -13.95315 -13.77446 -13.55210 -13.49582 -13.03396 -12.79502 -12.61942 -12.49979 -12.39548 -12.19034 -11.93387 -11.84354 -11.69652 -11.30610 -10.85615 -10.80589 -10.72879 -10.71214 -10.14990 -9.89849 -9.65278 -9.37766 -9.04265 -8.85523 -8.15260 -7.35155 -6.39306 -4.06036 1.96057 2.10894 2.28230 2.45821 2.50905 2.85685 3.23314 3.26541 3.41944 3.95837 4.08296 4.25614 4.30218 4.48815 4.56359 4.66415 4.71004 4.76963 4.91380 5.02482 5.11680 5.15798 5.27662 5.30438 5.33533 5.38378 5.51394 5.67366 5.78618 5.83225 5.88322 6.12404 6.25442 6.28976 6.52199 6.78234 6.80307 6.94817 7.09719 7.20997 7.32586 7.61223 7.68830 7.82499 7.99998 8.06186 8.96203 9.58994 10.68549 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002801 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.279703 B = 9993.283226 C =10334.967657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 H 0.098 0.902 4 C 0.099 3.901 5 N -0.626 5.626 6 C 0.524 3.476 7 O -0.507 6.507 8 C -0.095 4.095 9 C -0.037 4.037 10 C -0.188 4.188 11 C -0.075 4.075 12 C -0.216 4.216 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.389 4.389 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.096 3.904 25 C 0.514 3.486 26 O -0.548 6.548 27 N -0.711 5.711 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 14.880 19.279 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.116 0.884 4 C -0.024 4.024 5 N -0.364 5.364 6 C 0.312 3.688 7 O -0.379 6.379 8 C -0.135 4.135 9 C -0.038 4.038 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.236 4.236 13 C 0.109 3.891 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.030 4.030 25 C 0.300 3.700 26 O -0.426 6.426 27 N -0.363 5.363 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.044 14.668 18.764 24.837 hybrid contribution 0.562 0.197 -0.001 0.595 sum 7.605 14.865 18.763 25.117 Atomic orbital electron populations 1.22237 0.94206 1.03186 1.02728 1.21396 0.95402 0.96760 0.84795 0.88414 1.21986 1.02027 0.80200 0.98149 1.48237 1.48538 1.08874 1.30781 1.20791 0.77421 0.89578 0.80973 1.90768 1.46300 1.70371 1.30503 1.20658 1.01378 0.91409 1.00049 1.18618 0.93170 0.98550 0.93412 1.20408 0.92484 1.07895 0.99881 1.20734 0.98530 0.96958 0.93134 1.21305 0.95425 1.07673 0.99161 1.19005 0.91788 0.92632 0.85705 1.83569 1.37877 1.67875 1.23084 1.20765 0.90644 1.35401 0.99609 0.87647 1.24456 0.99887 0.95035 0.94619 1.69649 1.34709 1.36374 1.11200 0.86189 0.83716 0.79700 0.77349 1.19895 1.20811 1.18372 1.19928 0.98615 1.07766 0.92998 1.21901 1.00575 0.97062 0.83447 1.20315 0.76309 0.82548 0.90839 1.90820 1.49881 1.72118 1.29748 1.45505 1.65439 1.12324 1.13057 0.92132 0.90755 0.92089 0.86705 0.90277 0.87943 0.88178 0.87789 0.87159 0.84970 0.91096 0.86806 0.85888 0.87536 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.37 37.15 0.35 -0.75 16 2 C 0.12 0.66 3.87 -68.40 -0.26 0.40 16 3 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 4 C 0.10 0.70 5.88 -3.63 -0.02 0.68 16 5 N -0.63 -5.57 2.75 -174.17 -0.48 -6.04 16 6 C 0.52 6.55 7.72 -10.98 -0.08 6.46 16 7 O -0.51 -8.54 15.52 5.56 0.09 -8.45 16 8 C -0.10 -1.12 4.27 -29.03 -0.12 -1.25 16 9 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.19 -3.18 9.70 -39.53 -0.38 -3.56 16 11 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 12 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 13 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 14 O -0.22 -5.86 8.59 0.04 0.00 -5.86 16 15 C -0.39 -11.07 9.95 30.89 0.31 -10.77 16 16 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 17 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 18 N -0.88 -25.66 13.96 55.48 0.77 -24.89 16 19 Si 0.90 21.84 28.62 -169.99 -4.86 16.97 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.17 -3.48 9.65 -39.40 -0.38 -3.86 16 24 C 0.10 0.70 6.40 -5.04 -0.03 0.66 16 25 C 0.51 4.52 7.84 -11.75 -0.09 4.43 16 26 O -0.55 -6.86 17.80 5.55 0.10 -6.76 16 27 N -0.71 -4.62 5.00 -54.80 -0.27 -4.90 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.55 7.99 -51.93 -0.41 0.14 16 31 H 0.11 0.97 6.98 -51.92 -0.36 0.61 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.10 0.93 7.51 -51.93 -0.39 0.54 16 35 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.13 3.04 5.64 -52.49 -0.30 2.75 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 40 H 0.12 0.79 6.26 -51.93 -0.33 0.46 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 2.18 8.80 -40.82 -0.36 1.82 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -35.11 353.79 -6.99 -42.10 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.37 Total: 2.84 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.30 Total: -10.35 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.02 Total: -35.83 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.19 Total: -21.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.11 -6.99 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362985783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.481 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds