Wall clock time and date at job start Tue Mar 31 2020 12:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.21208 * 2 1 4 4 C 1.52990 * 109.18433 * 240.63817 * 2 1 3 5 5 N 1.47265 * 108.18683 * 286.41891 * 4 2 1 6 6 C 1.34781 * 121.35181 * 118.47728 * 5 4 2 7 7 O 1.21273 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99565 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.46859 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96330 * 269.72706 * 9 8 6 11 11 C 1.38282 * 120.13719 * 179.76699 * 10 9 8 12 12 C 1.38118 * 120.06632 * 0.50716 * 11 10 9 13 13 C 1.38865 * 119.93197 * 359.74460 * 12 11 10 14 14 O 1.35755 * 120.06902 * 180.02562 * 13 12 11 15 15 C 1.34829 * 116.99805 * 354.44196 * 14 13 12 16 16 H 1.07999 * 120.00328 * 5.06199 * 15 14 13 17 17 C 1.38659 * 119.99651 * 185.05333 * 15 14 13 18 18 N 1.31555 * 119.99684 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47093 * 90.00079 * 19 17 15 21 21 H 1.48502 * 109.46642 * 209.99640 * 19 17 15 22 22 H 1.48496 * 109.47233 * 329.99548 * 19 17 15 23 23 C 1.38068 * 119.96633 * 89.99786 * 9 8 6 24 24 C 1.47044 * 117.29296 * 298.49276 * 5 4 2 25 25 C 1.50400 * 108.92859 * 42.52476 * 24 5 4 26 26 O 1.21286 * 118.46675 * 167.51989 * 25 24 5 27 27 N 1.33379 * 123.04723 * 347.77541 * 25 24 5 28 28 H 1.09002 * 109.47418 * 300.62060 * 1 2 3 29 29 H 1.09002 * 109.47271 * 60.62424 * 1 2 3 30 30 H 1.09002 * 109.47704 * 180.61718 * 1 2 3 31 31 H 1.09011 * 109.71682 * 46.08856 * 4 2 1 32 32 H 1.08998 * 109.72448 * 166.69813 * 4 2 1 33 33 H 1.08994 * 109.46839 * 299.99513 * 8 6 5 34 34 H 1.09000 * 109.46826 * 59.99749 * 8 6 5 35 35 H 1.07997 * 119.93374 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96610 * 180.22526 * 11 10 9 37 37 H 1.08002 * 120.03559 * 179.72342 * 12 11 10 38 38 H 0.97004 * 119.99602 * 180.02562 * 18 17 15 39 39 H 1.08006 * 120.03633 * 0.02562 * 23 9 8 40 40 H 1.09002 * 109.57208 * 162.56298 * 24 5 4 41 41 H 1.09005 * 109.57060 * 282.91784 * 24 5 4 42 42 H 0.97005 * 117.71083 * 184.04587 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0327 -0.7085 -1.2593 5 7 1.8102 -2.1547 -1.0929 6 6 1.0047 -2.8409 -1.9277 7 8 0.4454 -2.2677 -2.8383 8 6 0.7993 -4.3207 -1.7295 9 6 -0.1383 -4.8438 -2.7870 10 6 -1.5016 -4.8632 -2.5533 11 6 -2.3655 -5.3378 -3.5231 12 6 -1.8685 -5.8039 -4.7245 13 6 -0.5000 -5.7906 -4.9601 14 8 -0.0085 -6.2476 -6.1401 15 6 -0.8890 -6.8068 -6.9945 16 1 -1.9438 -6.8019 -6.7628 17 6 -0.4401 -7.3881 -8.1706 18 7 -1.2993 -7.9333 -9.0044 19 14 1.3845 -7.3970 -8.5710 20 1 2.0067 -8.6266 -8.0176 21 1 1.5680 -7.3694 -10.0443 22 1 2.0291 -6.2021 -7.9694 23 6 0.3647 -5.3083 -3.9860 24 6 2.5022 -2.8195 0.0212 25 6 2.4149 -1.9447 1.2415 26 8 2.7233 -2.4174 2.3150 27 7 2.0093 -0.6748 1.1985 28 1 -0.3634 0.5234 0.8844 29 1 -0.3634 0.5041 -0.8955 30 1 -0.3634 -1.0276 0.0111 31 1 1.4813 -0.3492 -2.1284 32 1 3.0966 -0.5122 -1.3919 33 1 1.7576 -4.8341 -1.8069 34 1 0.3701 -4.4990 -0.7435 35 1 -1.8923 -4.5037 -1.6129 36 1 -3.4297 -5.3483 -3.3391 37 1 -2.5434 -6.1787 -5.4798 38 1 -0.9852 -8.3403 -9.8270 39 1 1.4296 -5.2973 -4.1660 40 1 2.0296 -3.7808 0.2231 41 1 3.5495 -2.9733 -0.2391 42 1 2.0394 -0.1635 2.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362985783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:18 Heat of formation + Delta-G solvation = -86.794439 kcal Electronic energy + Delta-G solvation = -26222.036258 eV Core-core repulsion = 22360.093843 eV Total energy + Delta-G solvation = -3861.942415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90619 -40.95022 -40.16304 -38.42679 -37.71681 -35.62029 -34.47635 -33.54086 -32.15915 -31.08941 -29.14893 -28.87725 -27.33713 -26.78756 -23.82117 -23.33556 -22.61176 -21.27643 -19.91699 -19.61408 -18.91777 -18.54026 -18.07535 -17.44191 -17.00653 -16.86446 -16.56846 -16.16933 -15.90706 -15.72349 -15.60662 -15.23838 -14.97137 -14.89131 -14.47901 -14.28657 -14.10849 -13.94666 -13.66904 -13.40787 -13.04084 -13.01931 -12.90269 -12.57817 -12.46714 -12.43378 -12.32439 -12.30341 -11.92617 -11.52416 -11.30740 -10.93523 -10.85239 -10.24040 -9.77102 -9.66746 -9.06403 -8.49807 -6.22638 0.47875 0.70189 1.30698 1.35223 1.46047 1.51911 1.57306 1.73514 2.26268 2.28425 2.76450 3.04112 3.11464 3.38381 3.53568 3.67668 3.84513 3.99589 4.06572 4.09808 4.27778 4.29817 4.39991 4.44050 4.53847 4.60332 4.64742 4.70553 4.73444 4.82461 4.85532 4.95772 5.19272 5.25044 5.28514 5.39599 5.64460 5.72408 5.76487 5.77168 5.91291 6.12281 6.22760 6.26962 6.84571 7.06819 7.12439 7.59324 8.62093 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002801 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.279703 B = 9993.283226 C =10334.967657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.132 0.868 4 C 0.092 3.908 5 N -0.616 5.616 6 C 0.525 3.475 7 O -0.561 6.561 8 C -0.096 4.096 9 C -0.027 4.027 10 C -0.171 4.171 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.265 1.265 23 C -0.178 4.178 24 C 0.094 3.906 25 C 0.514 3.486 26 O -0.590 6.590 27 N -0.702 5.702 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 16.530 22.398 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.150 0.850 4 C -0.030 4.030 5 N -0.352 5.352 6 C 0.315 3.685 7 O -0.438 6.438 8 C -0.135 4.135 9 C -0.028 4.028 10 C -0.189 4.189 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.198 4.198 24 C -0.030 4.030 25 C 0.301 3.699 26 O -0.470 6.470 27 N -0.353 5.353 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.023 16.365 21.947 28.826 hybrid contribution -0.148 -0.118 -0.631 0.658 sum 8.876 16.247 21.317 28.234 Atomic orbital electron populations 1.22214 0.95067 1.01706 1.03173 1.21458 0.94532 0.98065 0.83481 0.85011 1.22187 1.03247 0.79127 0.98439 1.48160 1.47213 1.09655 1.30142 1.20782 0.77297 0.89722 0.80688 1.90768 1.48744 1.71367 1.32890 1.20787 1.01840 0.91144 0.99707 1.19154 0.94330 0.96103 0.93220 1.20978 0.92433 1.04940 1.00584 1.21090 1.00534 0.95975 0.91945 1.21321 0.94886 1.09301 1.00410 1.19592 0.93177 0.94261 0.85884 1.83506 1.37491 1.69938 1.24457 1.20709 0.90126 1.36107 1.00645 0.90316 1.25292 1.04519 0.94743 0.94340 1.69734 1.36693 1.38102 1.12053 0.85207 0.78023 0.79632 0.77776 1.18710 1.19169 1.18933 1.20263 0.98896 1.07293 0.93308 1.22105 1.01865 0.97044 0.82030 1.20517 0.75776 0.83043 0.90594 1.90815 1.52041 1.73028 1.31157 1.45495 1.64194 1.11842 1.13749 0.90966 0.91078 0.94474 0.88193 0.88103 0.85140 0.84595 0.83736 0.84326 0.87573 0.90571 0.85768 0.84545 0.85219 0.75706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.37 71.98 0.67 -1.08 16 2 C 0.13 0.96 3.87 45.15 0.17 1.13 16 3 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 4 C 0.09 1.02 5.88 86.23 0.51 1.53 16 5 N -0.62 -8.81 2.75 -823.33 -2.26 -11.08 16 6 C 0.53 11.54 7.72 87.66 0.68 12.21 16 7 O -0.56 -18.01 15.52 -3.01 -0.05 -18.06 16 8 C -0.10 -1.85 4.27 29.10 0.12 -1.72 16 9 C -0.03 -0.85 4.37 -19.88 -0.09 -0.94 16 10 C -0.17 -5.26 9.70 22.30 0.22 -5.04 16 11 C -0.08 -2.79 10.04 22.25 0.22 -2.57 16 12 C -0.24 -11.04 9.17 22.39 0.21 -10.83 16 13 C 0.12 5.82 6.65 22.58 0.15 5.97 16 14 O -0.25 -13.82 8.59 -22.78 -0.20 -14.02 16 15 C -0.40 -24.23 9.95 67.92 0.68 -23.55 16 16 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 17 C 0.01 0.54 5.49 84.83 0.47 1.01 16 18 N -0.92 -56.29 13.96 21.61 0.30 -55.99 16 19 Si 0.97 46.24 28.62 68.60 1.96 48.20 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 23 C -0.18 -7.03 9.65 22.39 0.22 -6.82 16 24 C 0.09 0.98 6.40 85.44 0.55 1.53 16 25 C 0.51 7.37 7.84 87.78 0.69 8.06 16 26 O -0.59 -13.33 17.80 -3.05 -0.05 -13.39 16 27 N -0.70 -6.76 5.00 -446.46 -2.23 -9.00 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.04 0.58 7.99 -2.39 -0.02 0.56 16 31 H 0.10 1.51 6.98 -2.38 -0.02 1.49 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.14 1.72 7.51 -2.39 -0.02 1.70 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.11 5.35 5.64 -2.91 -0.02 5.34 16 38 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.14 1.09 6.26 -2.39 -0.01 1.08 16 41 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.41 3.14 8.80 -92.70 -0.82 2.33 16 Total: -1.00 -82.41 353.79 3.18 -79.23 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.25 Total: 15.19 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.46 Total: -21.11 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -4.19 Total: -76.06 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.30 Total: -45.46 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.96 Total: 48.20 kcal Total: -82.41 3.18 -79.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362985783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.561 kcal (2) G-P(sol) polarization free energy of solvation -82.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds