Wall clock time and date at job start Tue Mar 31 2020 12:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 N 1.46501 * 109.47185 * 120.00172 * 2 1 3 5 5 C 1.34777 * 119.99709 * 85.00095 * 4 2 1 6 6 O 1.21276 * 120.00111 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99620 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.46616 * 60.00499 * 7 5 4 9 9 C 1.52999 * 109.47565 * 300.00308 * 7 5 4 10 10 N 1.46506 * 109.46984 * 179.97438 * 7 5 4 11 11 S 1.65596 * 119.99958 * 215.00102 * 10 7 5 12 12 O 1.42097 * 104.27320 * 181.07104 * 11 10 7 13 13 O 1.42101 * 104.28043 * 308.93061 * 11 10 7 14 14 C 1.81405 * 104.44897 * 65.00287 * 11 10 7 15 15 C 1.52998 * 109.47036 * 173.77178 * 14 11 10 16 16 C 1.50697 * 115.54955 * 65.26921 * 15 14 11 17 17 H 1.07996 * 120.00581 * 268.54570 * 16 15 14 18 18 C 1.37876 * 119.99820 * 88.55096 * 16 15 14 19 19 N 1.31519 * 120.00131 * 174.70094 * 18 16 15 20 20 Si 1.86803 * 120.00149 * 354.69915 * 18 16 15 21 21 H 1.48501 * 109.47332 * 92.55432 * 20 18 16 22 22 H 1.48501 * 109.47332 * 212.55637 * 20 18 16 23 23 H 1.48499 * 109.46921 * 332.55475 * 20 18 16 24 24 C 1.53002 * 117.49768 * 279.59759 * 15 14 11 25 25 C 1.52999 * 117.49694 * 210.93866 * 15 14 11 26 26 H 1.08992 * 109.47424 * 59.99446 * 1 2 3 27 27 H 1.08993 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46760 * 299.99484 * 1 2 3 29 29 H 1.09004 * 109.46760 * 240.00516 * 2 1 3 30 30 H 1.08995 * 109.46610 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47087 * 300.00578 * 3 2 1 32 32 H 1.09004 * 109.47028 * 60.00679 * 3 2 1 33 33 H 0.96996 * 119.99788 * 264.99559 * 4 2 1 34 34 H 1.08992 * 109.47193 * 180.02562 * 9 7 5 35 35 H 1.09002 * 109.46678 * 300.00458 * 9 7 5 36 36 H 1.08997 * 109.46854 * 59.99727 * 9 7 5 37 37 H 0.97002 * 119.99270 * 35.00143 * 10 7 5 38 38 H 1.08993 * 109.47169 * 293.77549 * 14 11 10 39 39 H 1.09003 * 109.46935 * 53.77151 * 14 11 10 40 40 H 0.96996 * 120.00224 * 179.97438 * 19 18 16 41 41 H 1.08999 * 117.50103 * 0.02562 * 24 15 14 42 42 H 1.09002 * 117.49433 * 145.01977 * 24 15 14 43 43 H 1.09004 * 117.49876 * 214.97951 * 25 15 14 44 44 H 1.08997 * 117.50260 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1942 6 8 1.8591 -2.6677 0.2022 7 6 2.6500 -2.7426 2.4245 8 1 1.9777 -2.5437 3.2592 9 6 4.0527 -2.2372 2.7678 10 7 2.6986 -4.1846 2.1702 11 16 2.3557 -5.2523 3.3886 12 8 2.5253 -6.5308 2.7922 13 8 3.1807 -4.8312 4.4662 14 6 0.6075 -4.9556 3.7718 15 6 0.1240 -5.9949 4.7851 16 6 0.7663 -5.9231 6.1465 17 1 1.6519 -6.5041 6.3572 18 6 0.2231 -5.1156 7.1232 19 7 0.7199 -5.1314 8.3409 20 14 -1.2184 -3.9991 6.7171 21 1 -2.4905 -4.7038 7.0179 22 1 -1.1323 -2.7623 7.5345 23 1 -1.1784 -3.6436 5.2758 24 6 -0.2506 -7.3796 4.2529 25 6 -1.3453 -6.4162 4.7185 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.2491 -0.1823 1.9894 34 1 4.4165 -2.7513 3.6573 35 1 4.7249 -2.4360 1.9331 36 1 4.0160 -1.1644 2.9572 37 1 2.9317 -4.5138 1.2880 38 1 0.4923 -3.9568 4.1925 39 1 0.0169 -5.0358 2.8591 40 1 0.3380 -4.5631 9.0279 41 1 -0.1522 -7.5502 3.1808 42 1 -0.0328 -8.2385 4.8876 43 1 -1.8474 -6.6419 5.6593 44 1 -1.9676 -5.9527 3.9530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364881566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:52 Heat of formation + Delta-G solvation = -90.157764 kcal Electronic energy + Delta-G solvation = -26135.416337 eV Core-core repulsion = 22408.772028 eV Total energy + Delta-G solvation = -3726.644308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20756 -37.14063 -36.61879 -36.32105 -35.36007 -35.06789 -32.18777 -31.98085 -29.45769 -28.54215 -27.56217 -25.54842 -24.61795 -21.72542 -21.62711 -20.59739 -19.77175 -18.78359 -17.87849 -16.93991 -16.57832 -16.47830 -15.65231 -15.33593 -15.17594 -15.02800 -14.48552 -14.37241 -13.97709 -13.84752 -13.35261 -13.01401 -12.99204 -12.72633 -12.66243 -12.54997 -12.39094 -12.37702 -11.81709 -11.68646 -11.50405 -11.40658 -11.28833 -11.24419 -11.15973 -10.95572 -10.67041 -10.39066 -10.24772 -9.99171 -9.76092 -9.42797 -9.33267 -9.16953 -8.69007 -8.47679 -6.19440 -4.26761 0.89182 2.42381 2.81575 3.18779 3.28846 3.29924 3.35040 4.31746 4.33402 4.42202 4.56980 4.68789 4.75000 4.83359 4.84651 4.89975 4.99150 5.05625 5.17239 5.22761 5.34401 5.44151 5.49144 5.57390 5.65344 5.69311 5.75285 5.89788 5.95166 6.00546 6.04153 6.18060 6.19372 6.24252 6.43290 6.64794 6.86127 7.06203 7.12224 7.28818 7.57746 7.98796 8.34859 8.86389 9.41758 10.91977 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.004641 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.674605 B = 6032.198518 C = 6643.950960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.726 5.726 5 C 0.513 3.487 6 O -0.529 6.529 7 C 0.135 3.865 8 H 0.110 0.890 9 C -0.168 4.168 10 N -1.114 6.114 11 S 2.615 3.385 12 O -0.963 6.963 13 O -0.936 6.936 14 C -0.579 4.579 15 C 0.001 3.999 16 C -0.508 4.508 17 H 0.088 0.912 18 C 0.089 3.911 19 N -0.882 5.882 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.257 1.257 24 C -0.176 4.176 25 C -0.185 4.185 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.419 0.581 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.267 0.733 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 13.611 -14.971 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.380 5.380 5 C 0.297 3.703 6 O -0.404 6.404 7 C 0.023 3.977 8 H 0.128 0.872 9 C -0.227 4.227 10 N -0.871 5.871 11 S 2.710 3.290 12 O -0.953 6.953 13 O -0.925 6.925 14 C -0.711 4.711 15 C -0.002 4.002 16 C -0.545 4.545 17 H 0.106 0.894 18 C -0.115 4.115 19 N -0.517 5.517 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.182 1.182 24 C -0.214 4.214 25 C -0.224 4.224 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.598 12.690 -14.951 19.675 hybrid contribution -1.416 1.262 -0.210 1.908 sum 0.182 13.952 -15.161 20.605 Atomic orbital electron populations 1.22207 0.95212 1.02877 1.02142 1.20954 0.94272 0.92820 0.88841 1.22080 1.01768 0.94970 1.03009 1.46123 1.67929 1.06909 1.17050 1.20871 0.77132 0.82372 0.89904 1.90686 1.49239 1.65831 1.34660 1.20581 0.99412 0.82055 0.95689 0.87248 1.22303 0.94689 1.01449 1.04233 1.55964 1.86714 1.14643 1.29750 1.05021 0.78004 0.73118 0.72819 1.93529 1.86334 1.38779 1.76687 1.93583 1.63938 1.81595 1.53432 1.30329 1.23643 1.09741 1.07355 1.18851 0.95646 0.90796 0.94905 1.20347 1.13911 1.28512 0.91764 0.89450 1.24939 0.96363 0.95794 0.94439 1.69897 1.41424 1.38539 1.01870 0.86951 0.83325 0.80522 0.79221 1.20079 1.21680 1.18186 1.23033 1.04007 0.94628 0.99707 1.22987 0.92168 1.05272 1.01947 0.91648 0.91929 0.92326 0.89386 0.91877 0.90949 0.91916 0.76292 0.88938 0.91600 0.91321 0.74642 0.85882 0.87277 0.92287 0.89940 0.88566 0.88893 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.09 3.18 -67.93 -0.22 0.87 16 3 C -0.16 -0.85 9.38 37.16 0.35 -0.50 16 4 N -0.73 -6.38 4.97 -53.80 -0.27 -6.65 16 5 C 0.51 6.25 7.18 -10.98 -0.08 6.17 16 6 O -0.53 -8.10 15.65 5.56 0.09 -8.02 16 7 C 0.13 1.71 3.09 -69.08 -0.21 1.50 16 8 H 0.11 1.29 7.29 -51.93 -0.38 0.91 16 9 C -0.17 -1.82 9.41 37.16 0.35 -1.47 16 10 N -1.11 -16.86 5.15 -5.88 -0.03 -16.89 16 11 S 2.62 51.18 5.11 -107.50 -0.55 50.63 16 12 O -0.96 -20.94 18.08 -57.54 -1.04 -21.98 16 13 O -0.94 -21.17 16.78 -57.54 -0.97 -22.13 16 14 C -0.58 -11.37 5.38 37.16 0.20 -11.17 16 15 C 0.00 0.02 0.79 -155.66 -0.12 -0.11 16 16 C -0.51 -14.01 8.78 -34.44 -0.30 -14.31 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 19 N -0.88 -26.24 13.96 55.43 0.77 -25.47 16 20 Si 0.87 20.56 24.96 -169.99 -4.24 16.32 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.26 -5.56 5.68 56.52 0.32 -5.24 16 24 C -0.18 -3.69 9.96 -26.69 -0.27 -3.95 16 25 C -0.18 -3.86 7.67 -26.69 -0.20 -4.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.40 2.51 8.02 -40.82 -0.33 2.18 16 34 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.52 7.56 -51.93 -0.39 0.12 16 37 H 0.42 5.98 8.17 -34.47 -0.28 5.70 16 38 H 0.12 2.30 6.03 -51.93 -0.31 1.99 16 39 H 0.11 1.82 8.09 -51.92 -0.42 1.40 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 43 H 0.09 2.01 7.34 -51.93 -0.38 1.63 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -35.47 369.64 -8.06 -43.52 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.14 Total: 10.75 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -0.25 Total: -25.66 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.48 Total: -49.01 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.92 Total: -52.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.24 Total: 16.32 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.55 Total: 50.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.47 -8.06 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364881566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.634 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds