Wall clock time and date at job start Tue Mar 31 2020 12:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 N 1.46491 * 109.47263 * 120.00479 * 2 1 3 5 5 C 1.34786 * 120.00148 * 85.00075 * 4 2 1 6 6 O 1.21285 * 119.99435 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00157 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.46890 * 300.00197 * 7 5 4 9 9 C 1.53003 * 109.46855 * 59.99810 * 7 5 4 10 10 N 1.46491 * 109.47043 * 179.97438 * 7 5 4 11 11 S 1.65601 * 120.00069 * 144.99792 * 10 7 5 12 12 O 1.42098 * 104.27794 * 308.93453 * 11 10 7 13 13 O 1.42098 * 104.27820 * 181.06901 * 11 10 7 14 14 C 1.81407 * 104.44612 * 65.00248 * 11 10 7 15 15 C 1.53000 * 109.47091 * 174.34737 * 14 11 10 16 16 C 1.50702 * 115.55070 * 295.23001 * 15 14 11 17 17 H 1.07993 * 120.00226 * 95.16158 * 16 15 14 18 18 C 1.37882 * 119.99822 * 274.88891 * 16 15 14 19 19 N 1.31515 * 119.99551 * 6.44628 * 18 16 15 20 20 Si 1.86792 * 120.00141 * 186.44700 * 18 16 15 21 21 H 1.48500 * 109.47156 * 89.99648 * 20 18 16 22 22 H 1.48496 * 109.47324 * 210.00192 * 20 18 16 23 23 H 1.48504 * 109.47240 * 330.00108 * 20 18 16 24 24 C 1.52998 * 117.49864 * 80.89449 * 15 14 11 25 25 C 1.52998 * 117.50210 * 149.55494 * 15 14 11 26 26 H 1.09002 * 109.46930 * 299.99407 * 1 2 3 27 27 H 1.09002 * 109.47297 * 59.99540 * 1 2 3 28 28 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46431 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47069 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47366 * 300.00417 * 3 2 1 32 32 H 1.09002 * 109.46690 * 60.00446 * 3 2 1 33 33 H 0.96998 * 120.00151 * 265.00194 * 4 2 1 34 34 H 1.09002 * 109.46854 * 180.02562 * 9 7 5 35 35 H 1.09005 * 109.47225 * 299.99924 * 9 7 5 36 36 H 1.09000 * 109.47549 * 60.00300 * 9 7 5 37 37 H 0.97001 * 120.00549 * 324.99980 * 10 7 5 38 38 H 1.08995 * 109.46970 * 54.34720 * 14 11 10 39 39 H 1.09000 * 109.46775 * 294.34286 * 14 11 10 40 40 H 0.97003 * 119.99746 * 185.04386 * 19 18 16 41 41 H 1.09007 * 117.50251 * 215.00100 * 24 15 14 42 42 H 1.09003 * 117.50010 * 0.02562 * 24 15 14 43 43 H 1.09008 * 117.49227 * 359.97438 * 25 15 14 44 44 H 1.08996 * 117.50141 * 144.97145 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -2.0324 1.1941 6 8 1.8582 -2.6678 0.2023 7 6 2.6500 -2.7428 2.4243 8 1 3.6494 -2.3827 2.6688 9 6 1.7065 -2.4636 3.5960 10 7 2.6986 -4.1846 2.1699 11 16 3.9006 -5.1040 2.8425 12 8 5.0982 -4.4199 2.5004 13 8 3.6455 -6.4179 2.3652 14 6 3.5996 -5.0061 4.6287 15 6 4.5689 -5.9363 5.3610 16 6 4.3978 -7.4065 5.0779 17 1 5.0001 -7.8841 4.3193 18 6 3.4762 -8.1432 5.7914 19 7 2.6590 -7.5414 6.6278 20 14 3.3884 -9.9959 5.5699 21 1 4.2973 -10.6543 6.5423 22 1 1.9962 -10.4569 5.8030 23 1 3.8020 -10.3495 4.1881 24 6 5.9899 -5.4248 5.6059 25 6 5.0040 -5.5344 6.7717 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 2.2490 -0.1825 1.9894 34 1 2.0705 -2.9771 4.4859 35 1 1.6699 -1.3908 3.7854 36 1 0.7071 -2.8237 3.3516 37 1 2.0268 -4.6009 1.6075 38 1 2.5745 -5.3091 4.8415 39 1 3.7535 -3.9815 4.9674 40 1 2.0611 -8.0657 7.1834 41 1 6.8010 -6.1517 5.5623 42 1 6.2342 -4.4254 5.2457 43 1 4.6000 -4.6070 7.1779 44 1 5.1660 -6.3334 7.4952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364881567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:56 Heat of formation + Delta-G solvation = -95.492454 kcal Electronic energy + Delta-G solvation = -25841.657195 eV Core-core repulsion = 22114.781558 eV Total energy + Delta-G solvation = -3726.875638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14575 -36.78536 -36.55840 -36.21278 -35.24567 -35.07474 -32.02065 -31.92392 -29.45686 -28.20129 -27.54802 -25.47130 -24.53876 -21.62229 -21.24824 -20.51948 -19.81383 -18.78975 -17.76973 -16.91772 -16.46359 -16.31359 -15.49935 -15.30199 -14.99409 -14.68590 -14.44994 -14.38905 -13.88218 -13.75858 -13.52251 -13.23545 -12.86384 -12.68181 -12.47982 -12.42737 -11.94260 -11.88151 -11.75961 -11.69136 -11.39546 -11.31411 -11.24580 -11.15769 -11.00822 -10.88349 -10.56730 -10.48502 -10.14245 -9.95662 -9.74508 -9.33265 -9.28173 -8.96307 -8.54040 -8.12220 -6.13097 -4.21768 1.03537 2.50196 2.89474 3.31583 3.38230 3.41257 3.47565 4.40265 4.40765 4.54804 4.59438 4.73822 4.84275 4.91556 4.93656 5.01385 5.13928 5.16119 5.23431 5.29763 5.35944 5.44682 5.54289 5.60860 5.69829 5.76000 5.82840 5.94669 6.02780 6.07428 6.22628 6.28357 6.33868 6.57841 6.67505 6.95616 7.19767 7.22615 7.36773 7.37854 7.83629 8.06124 8.20332 8.85027 9.49285 10.95341 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.003492 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.298629 B = 8016.984313 C = 8258.498675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.727 5.727 5 C 0.517 3.483 6 O -0.526 6.526 7 C 0.131 3.869 8 H 0.115 0.885 9 C -0.177 4.177 10 N -1.113 6.113 11 S 2.604 3.396 12 O -0.979 6.979 13 O -0.938 6.938 14 C -0.554 4.554 15 C 0.042 3.958 16 C -0.507 4.507 17 H 0.071 0.929 18 C 0.079 3.921 19 N -0.877 5.877 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.214 4.214 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.420 0.580 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 18.471 -5.990 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.381 5.381 5 C 0.302 3.698 6 O -0.401 6.401 7 C 0.018 3.982 8 H 0.133 0.867 9 C -0.236 4.236 10 N -0.870 5.870 11 S 2.701 3.299 12 O -0.969 6.969 13 O -0.928 6.928 14 C -0.687 4.687 15 C 0.040 3.960 16 C -0.544 4.544 17 H 0.089 0.911 18 C -0.125 4.125 19 N -0.513 5.513 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.252 4.252 25 C -0.177 4.177 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.255 0.745 38 H 0.155 0.845 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.843 17.602 -7.086 19.360 hybrid contribution -0.808 -0.532 0.788 1.247 sum -4.650 17.070 -6.298 18.780 Atomic orbital electron populations 1.22190 0.95245 1.02768 1.02000 1.20949 0.94210 0.92827 0.88998 1.22079 1.01884 0.94960 1.02899 1.46097 1.68236 1.06871 1.16920 1.20740 0.77240 0.82267 0.89601 1.90696 1.49029 1.65864 1.34536 1.20588 1.01691 0.82696 0.93193 0.86686 1.22452 1.00649 1.02548 0.97919 1.55889 1.50016 1.14697 1.66382 1.05286 0.73118 0.73252 0.78237 1.93495 1.45166 1.75186 1.83011 1.93582 1.83879 1.36200 1.79133 1.30098 1.11513 1.05739 1.21377 1.18313 0.88342 0.93237 0.96125 1.20570 1.21187 0.90747 1.21875 0.91132 1.24928 0.93909 0.98787 0.94889 1.70007 1.21673 1.35481 1.24091 0.86592 0.77319 0.85202 0.79194 1.20556 1.21092 1.19066 1.23256 0.94855 1.00718 1.06329 1.22529 1.02420 1.00515 0.92231 0.92435 0.91725 0.91970 0.89383 0.91822 0.90968 0.91998 0.76457 0.89974 0.91054 0.90984 0.74496 0.84474 0.88303 0.92868 0.89449 0.90662 0.91513 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.13 1.10 3.18 -67.94 -0.22 0.89 16 3 C -0.16 -0.87 9.38 37.16 0.35 -0.52 16 4 N -0.73 -6.44 4.97 -53.81 -0.27 -6.70 16 5 C 0.52 6.63 7.18 -10.98 -0.08 6.56 16 6 O -0.53 -8.75 15.65 5.55 0.09 -8.66 16 7 C 0.13 1.65 3.22 -69.09 -0.22 1.43 16 8 H 0.12 1.34 7.48 -51.93 -0.39 0.95 16 9 C -0.18 -1.74 9.38 37.16 0.35 -1.39 16 10 N -1.11 -18.05 5.15 -5.89 -0.03 -18.08 16 11 S 2.60 53.05 5.33 -107.50 -0.57 52.48 16 12 O -0.98 -21.31 17.39 -57.54 -1.00 -22.31 16 13 O -0.94 -23.06 17.10 -57.54 -0.98 -24.05 16 14 C -0.55 -11.11 4.88 37.16 0.18 -10.93 16 15 C 0.04 1.00 1.34 -155.66 -0.21 0.79 16 16 C -0.51 -13.75 7.66 -34.44 -0.26 -14.01 16 17 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 18 C 0.08 2.15 5.39 -17.82 -0.10 2.05 16 19 N -0.88 -23.77 12.93 55.43 0.72 -23.05 16 20 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.21 -4.56 9.96 -26.70 -0.27 -4.82 16 25 C -0.14 -3.03 9.44 -26.70 -0.25 -3.28 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.40 2.35 8.02 -40.82 -0.33 2.02 16 34 H 0.08 0.86 5.97 -51.93 -0.31 0.55 16 35 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.42 6.75 8.17 -34.47 -0.28 6.47 16 38 H 0.14 2.84 8.14 -51.93 -0.42 2.42 16 39 H 0.10 1.60 7.11 -51.92 -0.37 1.23 16 40 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 41 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -34.94 375.60 -8.87 -43.81 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.08 Total: 8.63 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -0.37 Total: -24.15 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.42 Total: -47.83 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -1.90 Total: -55.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.57 Total: 52.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.94 -8.87 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364881567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.687 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds