Wall clock time and date at job start Tue Mar 31 2020 12:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 N 1.46491 * 109.47263 * 120.00479 * 2 1 3 5 5 C 1.34786 * 120.00148 * 85.00075 * 4 2 1 6 6 O 1.21285 * 119.99435 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00157 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.46890 * 300.00197 * 7 5 4 9 9 C 1.53003 * 109.46855 * 59.99810 * 7 5 4 10 10 N 1.46491 * 109.47043 * 179.97438 * 7 5 4 11 11 S 1.65601 * 120.00069 * 144.99792 * 10 7 5 12 12 O 1.42098 * 104.27794 * 308.93453 * 11 10 7 13 13 O 1.42098 * 104.27820 * 181.06901 * 11 10 7 14 14 C 1.81407 * 104.44612 * 65.00248 * 11 10 7 15 15 C 1.53000 * 109.47091 * 174.34737 * 14 11 10 16 16 C 1.50702 * 115.55070 * 295.23001 * 15 14 11 17 17 H 1.07993 * 120.00226 * 95.16158 * 16 15 14 18 18 C 1.37882 * 119.99822 * 274.88891 * 16 15 14 19 19 N 1.31515 * 119.99551 * 6.44628 * 18 16 15 20 20 Si 1.86792 * 120.00141 * 186.44700 * 18 16 15 21 21 H 1.48500 * 109.47156 * 89.99648 * 20 18 16 22 22 H 1.48496 * 109.47324 * 210.00192 * 20 18 16 23 23 H 1.48504 * 109.47240 * 330.00108 * 20 18 16 24 24 C 1.52998 * 117.49864 * 80.89449 * 15 14 11 25 25 C 1.52998 * 117.50210 * 149.55494 * 15 14 11 26 26 H 1.09002 * 109.46930 * 299.99407 * 1 2 3 27 27 H 1.09002 * 109.47297 * 59.99540 * 1 2 3 28 28 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46431 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47069 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47366 * 300.00417 * 3 2 1 32 32 H 1.09002 * 109.46690 * 60.00446 * 3 2 1 33 33 H 0.96998 * 120.00151 * 265.00194 * 4 2 1 34 34 H 1.09002 * 109.46854 * 180.02562 * 9 7 5 35 35 H 1.09005 * 109.47225 * 299.99924 * 9 7 5 36 36 H 1.09000 * 109.47549 * 60.00300 * 9 7 5 37 37 H 0.97001 * 120.00549 * 324.99980 * 10 7 5 38 38 H 1.08995 * 109.46970 * 54.34720 * 14 11 10 39 39 H 1.09000 * 109.46775 * 294.34286 * 14 11 10 40 40 H 0.97003 * 119.99746 * 185.04386 * 19 18 16 41 41 H 1.09007 * 117.50251 * 215.00100 * 24 15 14 42 42 H 1.09003 * 117.50010 * 0.02562 * 24 15 14 43 43 H 1.09008 * 117.49227 * 359.97438 * 25 15 14 44 44 H 1.08996 * 117.50141 * 144.97145 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -2.0324 1.1941 6 8 1.8582 -2.6678 0.2023 7 6 2.6500 -2.7428 2.4243 8 1 3.6494 -2.3827 2.6688 9 6 1.7065 -2.4636 3.5960 10 7 2.6986 -4.1846 2.1699 11 16 3.9006 -5.1040 2.8425 12 8 5.0982 -4.4199 2.5004 13 8 3.6455 -6.4179 2.3652 14 6 3.5996 -5.0061 4.6287 15 6 4.5689 -5.9363 5.3610 16 6 4.3978 -7.4065 5.0779 17 1 5.0001 -7.8841 4.3193 18 6 3.4762 -8.1432 5.7914 19 7 2.6590 -7.5414 6.6278 20 14 3.3884 -9.9959 5.5699 21 1 4.2973 -10.6543 6.5423 22 1 1.9962 -10.4569 5.8030 23 1 3.8020 -10.3495 4.1881 24 6 5.9899 -5.4248 5.6059 25 6 5.0040 -5.5344 6.7717 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 2.2490 -0.1825 1.9894 34 1 2.0705 -2.9771 4.4859 35 1 1.6699 -1.3908 3.7854 36 1 0.7071 -2.8237 3.3516 37 1 2.0268 -4.6009 1.6075 38 1 2.5745 -5.3091 4.8415 39 1 3.7535 -3.9815 4.9674 40 1 2.0611 -8.0657 7.1834 41 1 6.8010 -6.1517 5.5623 42 1 6.2342 -4.4254 5.2457 43 1 4.6000 -4.6070 7.1779 44 1 5.1660 -6.3334 7.4952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364881567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:55 Heat of formation + Delta-G solvation = -122.574967 kcal Electronic energy + Delta-G solvation = -25842.831581 eV Core-core repulsion = 22114.781558 eV Total energy + Delta-G solvation = -3728.050024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10833 -38.54688 -38.01487 -37.29094 -36.81643 -36.34250 -34.04347 -32.76872 -30.46639 -29.79588 -28.06577 -27.46717 -25.45656 -22.95984 -22.36993 -21.52853 -21.42862 -20.34004 -19.05438 -18.40571 -17.99680 -17.45280 -16.87598 -16.60821 -16.52504 -16.20376 -15.80877 -15.59219 -15.15751 -14.96226 -14.71048 -14.28012 -13.82703 -13.68561 -13.61724 -13.34247 -13.18679 -13.11197 -13.03601 -13.00035 -12.93083 -12.84673 -12.77331 -12.59625 -12.42496 -12.27658 -12.19195 -11.89078 -11.87517 -11.54145 -11.06211 -10.83110 -10.56492 -10.47328 -10.14257 -9.86997 -8.17571 -6.29017 -0.55562 1.37728 1.41270 1.52070 1.52598 1.84369 2.21253 2.42611 2.96143 3.10731 3.37265 3.46233 3.55312 3.92241 3.96260 4.03103 4.07292 4.17928 4.22994 4.34740 4.42827 4.51905 4.63695 4.76031 4.77695 4.78752 4.87262 4.95382 4.99890 5.01031 5.06294 5.24523 5.28779 5.29988 5.35956 5.50663 5.54042 5.63689 5.76066 5.98301 6.25945 6.52839 6.76625 7.19618 7.42455 8.89935 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.003492 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.298629 B = 8016.984313 C = 8258.498675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.152 4.152 4 N -0.707 5.707 5 C 0.515 3.485 6 O -0.574 6.574 7 C 0.120 3.880 8 H 0.130 0.870 9 C -0.175 4.175 10 N -1.109 6.109 11 S 2.617 3.383 12 O -0.996 6.996 13 O -0.991 6.991 14 C -0.542 4.542 15 C 0.006 3.994 16 C -0.525 4.525 17 H 0.045 0.955 18 C 0.043 3.957 19 N -0.890 5.890 20 Si 0.930 3.070 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.281 1.281 24 C -0.203 4.203 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.419 0.581 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.419 0.581 38 H 0.130 0.870 39 H 0.144 0.856 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 21.495 -4.922 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.210 4.210 4 N -0.361 5.361 5 C 0.299 3.701 6 O -0.453 6.453 7 C 0.009 3.991 8 H 0.147 0.853 9 C -0.233 4.233 10 N -0.868 5.868 11 S 2.715 3.285 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.676 4.676 15 C 0.004 3.996 16 C -0.562 4.562 17 H 0.063 0.937 18 C -0.160 4.160 19 N -0.526 5.526 20 Si 0.756 3.244 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.206 1.206 24 C -0.240 4.240 25 C -0.170 4.170 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.257 0.743 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.223 20.673 -5.990 21.934 hybrid contribution -0.677 -1.382 0.412 1.593 sum -4.900 19.291 -5.578 20.671 Atomic orbital electron populations 1.22148 0.94702 1.01331 1.03548 1.21077 0.94657 0.94184 0.87608 1.22030 1.01783 0.92750 1.04401 1.45983 1.66619 1.05610 1.17918 1.20815 0.76946 0.83380 0.88932 1.90682 1.51427 1.67089 1.36078 1.21002 1.03435 0.80353 0.94334 0.85252 1.22490 0.99457 1.05293 0.96110 1.55497 1.48930 1.16376 1.65966 1.04629 0.73149 0.72263 0.78466 1.93460 1.46529 1.75144 1.83461 1.93508 1.84778 1.39552 1.80318 1.29911 1.10028 1.07501 1.20149 1.18431 0.90791 0.92313 0.98080 1.20717 1.20953 0.93249 1.21305 0.93673 1.25421 0.93992 1.01496 0.95087 1.70028 1.21912 1.36187 1.24479 0.85986 0.77775 0.82277 0.78411 1.19404 1.20217 1.20575 1.23322 0.93569 1.01815 1.05320 1.22501 1.02323 1.00914 0.91218 0.90728 0.90375 0.94828 0.92070 0.91910 0.89882 0.90099 0.74321 0.90185 0.86945 0.91397 0.74502 0.85164 0.83820 0.92676 0.90106 0.87848 0.88716 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.13 1.90 3.18 44.99 0.14 2.04 16 3 C -0.15 -1.18 9.38 71.98 0.68 -0.51 16 4 N -0.71 -10.92 4.97 -442.53 -2.20 -13.11 16 5 C 0.51 12.63 7.18 87.66 0.63 13.26 16 6 O -0.57 -19.39 15.65 -3.05 -0.05 -19.44 16 7 C 0.12 2.80 3.22 44.25 0.14 2.94 16 8 H 0.13 2.64 7.48 -2.39 -0.02 2.63 16 9 C -0.17 -2.89 9.38 71.98 0.67 -2.22 16 10 N -1.11 -35.60 5.15 -172.53 -0.89 -36.49 16 11 S 2.62 106.35 5.33 -56.49 -0.30 106.05 16 12 O -1.00 -42.66 17.39 -127.65 -2.22 -44.88 16 13 O -0.99 -50.47 17.10 -127.65 -2.18 -52.65 16 14 C -0.54 -20.87 4.88 71.98 0.35 -20.52 16 15 C 0.01 0.29 1.34 -52.93 -0.07 0.21 16 16 C -0.52 -28.93 7.66 25.60 0.20 -28.74 16 17 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 18 C 0.04 2.32 5.39 84.66 0.46 2.78 16 19 N -0.89 -47.99 12.93 21.45 0.28 -47.71 16 20 Si 0.93 44.41 29.55 68.60 2.03 46.44 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 24 C -0.20 -8.28 9.96 30.62 0.30 -7.98 16 25 C -0.13 -5.49 9.44 30.62 0.29 -5.20 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 1.25 7.58 -2.39 -0.02 1.24 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.42 3.33 8.02 -92.71 -0.74 2.58 16 34 H 0.08 1.40 5.97 -2.39 -0.01 1.38 16 35 H 0.11 0.92 7.56 -2.38 -0.02 0.90 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.42 13.83 8.17 -96.75 -0.79 13.04 16 38 H 0.13 5.25 8.14 -2.39 -0.02 5.23 16 39 H 0.14 4.11 7.11 -2.39 -0.02 4.09 16 40 H 0.26 13.60 8.32 -92.71 -0.77 12.82 16 41 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 42 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 43 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 44 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -77.86 375.60 -1.59 -79.45 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.53 Total: 27.78 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 4.47 Total: -45.43 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -2.81 Total: -97.31 kcal Atomic # 8 Polarization: -112.52 SS G_CDS: -4.45 Total: -116.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 106.35 SS G_CDS: -0.30 Total: 106.05 kcal Total: -77.86 -1.59 -79.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364881567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.129 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds