Wall clock time and date at job start Tue Mar 31 2020 12:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50698 * 109.47053 * 119.99773 * 2 1 3 5 5 H 1.07997 * 120.00010 * 84.96091 * 4 2 1 6 6 C 1.37880 * 120.00157 * 264.95477 * 4 2 1 7 7 N 1.31507 * 120.00151 * 177.00078 * 6 4 2 8 8 Si 1.86799 * 119.99756 * 357.00409 * 6 4 2 9 9 H 1.48503 * 109.46957 * 274.92075 * 8 6 4 10 10 H 1.48497 * 109.47419 * 34.92174 * 8 6 4 11 11 H 1.48505 * 109.46966 * 154.92260 * 8 6 4 12 12 N 1.46498 * 109.47148 * 240.00149 * 2 1 3 13 13 C 1.46501 * 119.99967 * 299.99462 * 12 2 1 14 14 S 1.65602 * 120.00255 * 120.00081 * 12 2 1 15 15 O 1.42099 * 106.40408 * 203.53913 * 14 12 2 16 16 O 1.42101 * 106.39891 * 336.45846 * 14 12 2 17 17 N 1.65602 * 107.21791 * 89.99563 * 14 12 2 18 18 C 1.46846 * 125.35174 * 269.72068 * 17 14 12 19 19 C 1.54113 * 106.35415 * 161.26501 * 18 17 14 20 20 H 1.09000 * 113.24810 * 267.33620 * 19 18 17 21 21 C 1.53734 * 109.47286 * 140.90597 * 19 18 17 22 22 H 1.08999 * 110.12675 * 159.31399 * 21 19 18 23 23 O 1.42898 * 110.12351 * 37.63386 * 21 19 18 24 24 C 1.53600 * 106.10822 * 278.47493 * 21 19 18 25 25 C 1.53473 * 107.20580 * 341.92814 * 24 21 19 26 26 C 1.53683 * 107.42450 * 0.21023 * 25 24 21 27 27 H 1.08998 * 112.76927 * 254.28952 * 26 25 24 28 28 C 1.46705 * 125.34875 * 90.02930 * 17 14 12 29 29 H 1.09001 * 109.47038 * 185.60246 * 1 2 3 30 30 H 1.08993 * 109.47247 * 305.60722 * 1 2 3 31 31 H 1.09002 * 109.46834 * 65.60808 * 1 2 3 32 32 H 0.97001 * 120.00256 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46997 * 90.00147 * 13 12 2 34 34 H 1.08997 * 109.47235 * 210.00137 * 13 12 2 35 35 H 1.09002 * 109.47048 * 330.00615 * 13 12 2 36 36 H 1.09008 * 110.06133 * 280.62319 * 18 17 14 37 37 H 1.08997 * 110.06454 * 42.13322 * 18 17 14 38 38 H 0.96705 * 114.00122 * 180.02562 * 23 21 19 39 39 H 1.09003 * 109.89946 * 101.32651 * 24 21 19 40 40 H 1.08996 * 109.89518 * 222.36179 * 24 21 19 41 41 H 1.08997 * 109.86033 * 240.74963 * 25 24 21 42 42 H 1.08999 * 109.86086 * 119.67271 * 25 24 21 43 43 H 1.08998 * 109.79230 * 299.66622 * 28 17 14 44 44 H 1.08998 * 109.79798 * 60.50144 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1349 -1.7854 1.2293 6 6 2.3611 0.0123 2.3578 7 7 2.7431 -0.6117 3.4506 8 14 2.2639 1.8776 2.3327 9 1 3.5278 2.4318 1.7843 10 1 1.1255 2.3025 1.4791 11 1 2.0612 2.3812 3.7150 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 2.8228 -0.5645 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.2893 0.7750 -0.9082 19 6 6.4904 -0.0455 -0.3991 20 1 6.2896 -0.5667 0.5369 21 6 7.7303 0.8594 -0.3145 22 1 8.4654 0.4260 0.3636 23 8 7.3571 2.1643 0.1327 24 6 8.3027 0.9322 -1.7380 25 6 7.7113 -0.2447 -2.5258 26 6 6.7828 -1.0154 -1.5741 27 1 7.2122 -1.9593 -1.2383 28 6 5.4138 -1.2028 -2.2518 29 1 -0.3633 -1.0228 0.1003 30 1 -0.3633 0.5983 0.8355 31 1 -0.3633 0.4244 -0.9360 32 1 2.9741 -0.1033 4.2438 33 1 0.7376 -2.1444 -1.9993 34 1 2.4630 -2.5818 -1.9863 35 1 1.5296 -2.5968 -0.4708 36 1 5.6370 1.6587 -1.4436 37 1 4.6568 1.0694 -0.0708 38 1 8.0977 2.7818 0.2058 39 1 8.0149 1.8737 -2.2059 40 1 9.3892 0.8513 -1.7055 41 1 8.5120 -0.8983 -2.8718 42 1 7.1418 0.1284 -3.3770 43 1 4.9809 -2.1570 -1.9514 44 1 5.5314 -1.1750 -3.3350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364955511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:42 Heat of formation + Delta-G solvation = -123.458220 kcal Electronic energy + Delta-G solvation = -27521.749985 eV Core-core repulsion = 23793.661661 eV Total energy + Delta-G solvation = -3728.088324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.08397 -36.74280 -36.40448 -36.24875 -35.27296 -33.74034 -32.46712 -29.92862 -29.81827 -28.82987 -25.70334 -25.54915 -25.14908 -22.70191 -20.61340 -20.48030 -19.53223 -18.42038 -17.48574 -17.22958 -16.98480 -16.58634 -16.21114 -15.46054 -14.84061 -14.42762 -14.06817 -13.70711 -13.49252 -13.46071 -13.09085 -12.90445 -12.70398 -12.59687 -12.48635 -12.17119 -11.92361 -11.76364 -11.68600 -11.60120 -11.41638 -11.39553 -11.15602 -10.87135 -10.77672 -10.69425 -10.66666 -10.47249 -10.38559 -10.31800 -9.89787 -9.80538 -9.36775 -8.68939 -8.51573 -8.01430 -6.19651 -4.20137 1.17644 3.26928 3.35829 3.43104 3.47746 4.05446 4.09877 4.31350 4.34344 4.50895 4.75826 4.92333 5.06826 5.14116 5.22800 5.28307 5.35706 5.47878 5.55744 5.64329 5.70501 5.80556 5.84610 5.93009 5.95255 6.05059 6.11596 6.17028 6.24616 6.29537 6.38783 6.45777 6.49524 6.54854 6.63100 6.71490 6.76979 7.02832 7.22353 7.48505 7.67766 7.69694 8.41655 8.84659 9.42294 10.92026 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.007258 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.663982 B = 3857.079808 C = 5091.700637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.055 0.945 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.854 3.146 9 H -0.264 1.264 10 H -0.260 1.260 11 H -0.285 1.285 12 N -0.986 5.986 13 C 0.107 3.893 14 S 2.788 3.212 15 O -0.994 6.994 16 O -0.981 6.981 17 N -1.014 6.014 18 C 0.145 3.855 19 C -0.088 4.088 20 H 0.103 0.897 21 C 0.109 3.891 22 H 0.061 0.939 23 O -0.557 6.557 24 C -0.156 4.156 25 C -0.115 4.115 26 C -0.094 4.094 27 H 0.098 0.902 28 C 0.132 3.868 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.374 0.626 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -0.271 -8.774 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.073 0.927 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.680 3.320 9 H -0.189 1.189 10 H -0.184 1.184 11 H -0.211 1.211 12 N -0.827 5.827 13 C -0.039 4.039 14 S 2.800 3.200 15 O -0.978 6.978 16 O -0.965 6.965 17 N -0.853 5.853 18 C 0.020 3.980 19 C -0.108 4.108 20 H 0.121 0.879 21 C 0.049 3.951 22 H 0.079 0.921 23 O -0.362 6.362 24 C -0.194 4.194 25 C -0.152 4.152 26 C -0.114 4.114 27 H 0.117 0.883 28 C 0.006 3.994 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.220 0.780 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.015 -0.002 -9.401 13.736 hybrid contribution 0.738 0.940 0.580 1.328 sum 10.753 0.938 -8.822 13.940 Atomic orbital electron populations 1.22170 0.97959 1.01114 0.99094 1.19090 0.91771 0.92890 0.83326 0.92723 1.21166 1.43878 0.95947 0.94693 0.90000 1.24931 0.94004 0.98010 0.95370 1.69872 1.44518 1.35915 1.02264 0.87218 0.80430 0.86689 0.77682 1.18945 1.18437 1.21058 1.57996 1.64272 1.21451 1.39030 1.21193 0.98948 0.81914 1.01880 1.01694 0.71727 0.73398 0.73179 1.93528 1.85840 1.76326 1.42093 1.93562 1.83671 1.32383 1.86918 1.58919 1.29041 1.36215 1.61133 1.21419 0.92296 0.91809 0.92519 1.22676 0.93932 0.94968 0.99242 0.87859 1.22270 0.95595 0.83817 0.93411 0.92061 1.86654 1.37841 1.22043 1.89621 1.22717 1.00111 0.99961 0.96611 1.22019 0.98636 0.96362 0.98210 1.22563 0.95029 0.98970 0.94859 0.88337 1.21576 0.89773 0.89809 0.98289 0.92850 0.92709 0.95387 0.92402 0.93908 0.93040 0.90118 0.91441 0.90451 0.77977 0.90765 0.91600 0.91529 0.91123 0.91893 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.09 37.16 0.34 -2.74 16 2 C 0.23 5.49 2.25 -69.08 -0.16 5.34 16 3 H 0.06 1.38 4.14 -51.93 -0.22 1.17 16 4 C -0.52 -13.52 8.73 -34.44 -0.30 -13.82 16 5 H 0.08 2.27 6.82 -52.49 -0.36 1.91 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -25.56 13.96 55.43 0.77 -24.79 16 8 Si 0.85 21.14 26.87 -169.99 -4.57 16.57 16 9 H -0.26 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.26 -6.31 6.70 56.52 0.38 -5.93 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.99 -20.72 3.12 -115.85 -0.36 -21.08 16 13 C 0.11 1.92 9.45 59.85 0.57 2.48 16 14 S 2.79 57.79 6.29 -107.50 -0.68 57.12 16 15 O -0.99 -20.91 16.77 -57.17 -0.96 -21.87 16 16 O -0.98 -23.08 16.26 -57.17 -0.93 -24.01 16 17 N -1.01 -18.30 3.74 -112.80 -0.42 -18.72 16 18 C 0.14 2.63 5.60 -3.27 -0.02 2.61 16 19 C -0.09 -1.30 3.93 -88.53 -0.35 -1.65 16 20 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 21 C 0.11 1.29 3.88 -26.04 -0.10 1.19 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 O -0.56 -7.34 11.97 -35.23 -0.42 -7.76 16 24 C -0.16 -1.54 6.24 -26.17 -0.16 -1.70 16 25 C -0.11 -1.17 6.15 -26.13 -0.16 -1.33 16 26 C -0.09 -1.13 3.94 -88.66 -0.35 -1.48 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 C 0.13 1.89 6.35 -3.46 -0.02 1.87 16 29 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 30 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 35 H 0.08 1.48 6.56 -51.93 -0.34 1.14 16 36 H 0.07 1.19 7.11 -51.92 -0.37 0.83 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.37 3.06 9.11 45.56 0.42 3.47 16 39 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.78 7.29 -51.93 -0.38 0.40 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.90 7.42 -51.93 -0.39 0.51 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -32.82 352.58 -9.30 -42.11 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.23 Total: 4.24 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.81 Total: -7.12 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.01 Total: -64.59 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -2.31 Total: -53.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.57 Total: 16.57 kcal Atomic # 16 Polarization: 57.79 SS G_CDS: -0.68 Total: 57.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.82 -9.30 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364955511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.347 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds