Wall clock time and date at job start Tue Mar 31 2020 12:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50698 * 109.47053 * 119.99773 * 2 1 3 5 5 H 1.07997 * 120.00010 * 84.96091 * 4 2 1 6 6 C 1.37880 * 120.00157 * 264.95477 * 4 2 1 7 7 N 1.31507 * 120.00151 * 177.00078 * 6 4 2 8 8 Si 1.86799 * 119.99756 * 357.00409 * 6 4 2 9 9 H 1.48503 * 109.46957 * 274.92075 * 8 6 4 10 10 H 1.48497 * 109.47419 * 34.92174 * 8 6 4 11 11 H 1.48505 * 109.46966 * 154.92260 * 8 6 4 12 12 N 1.46498 * 109.47148 * 240.00149 * 2 1 3 13 13 C 1.46501 * 119.99967 * 299.99462 * 12 2 1 14 14 S 1.65602 * 120.00255 * 120.00081 * 12 2 1 15 15 O 1.42099 * 106.40408 * 203.53913 * 14 12 2 16 16 O 1.42101 * 106.39891 * 336.45846 * 14 12 2 17 17 N 1.65602 * 107.21791 * 89.99563 * 14 12 2 18 18 C 1.46846 * 125.35174 * 269.72068 * 17 14 12 19 19 C 1.54113 * 106.35415 * 161.26501 * 18 17 14 20 20 H 1.09000 * 113.24810 * 267.33620 * 19 18 17 21 21 C 1.53734 * 109.47286 * 140.90597 * 19 18 17 22 22 H 1.08999 * 110.12675 * 159.31399 * 21 19 18 23 23 O 1.42898 * 110.12351 * 37.63386 * 21 19 18 24 24 C 1.53600 * 106.10822 * 278.47493 * 21 19 18 25 25 C 1.53473 * 107.20580 * 341.92814 * 24 21 19 26 26 C 1.53683 * 107.42450 * 0.21023 * 25 24 21 27 27 H 1.08998 * 112.76927 * 254.28952 * 26 25 24 28 28 C 1.46705 * 125.34875 * 90.02930 * 17 14 12 29 29 H 1.09001 * 109.47038 * 185.60246 * 1 2 3 30 30 H 1.08993 * 109.47247 * 305.60722 * 1 2 3 31 31 H 1.09002 * 109.46834 * 65.60808 * 1 2 3 32 32 H 0.97001 * 120.00256 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46997 * 90.00147 * 13 12 2 34 34 H 1.08997 * 109.47235 * 210.00137 * 13 12 2 35 35 H 1.09002 * 109.47048 * 330.00615 * 13 12 2 36 36 H 1.09008 * 110.06133 * 280.62319 * 18 17 14 37 37 H 1.08997 * 110.06454 * 42.13322 * 18 17 14 38 38 H 0.96705 * 114.00122 * 180.02562 * 23 21 19 39 39 H 1.09003 * 109.89946 * 101.32651 * 24 21 19 40 40 H 1.08996 * 109.89518 * 222.36179 * 24 21 19 41 41 H 1.08997 * 109.86033 * 240.74963 * 25 24 21 42 42 H 1.08999 * 109.86086 * 119.67271 * 25 24 21 43 43 H 1.08998 * 109.79230 * 299.66622 * 28 17 14 44 44 H 1.08998 * 109.79798 * 60.50144 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1349 -1.7854 1.2293 6 6 2.3611 0.0123 2.3578 7 7 2.7431 -0.6117 3.4506 8 14 2.2639 1.8776 2.3327 9 1 3.5278 2.4318 1.7843 10 1 1.1255 2.3025 1.4791 11 1 2.0612 2.3812 3.7150 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 2.8228 -0.5645 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.2893 0.7750 -0.9082 19 6 6.4904 -0.0455 -0.3991 20 1 6.2896 -0.5667 0.5369 21 6 7.7303 0.8594 -0.3145 22 1 8.4654 0.4260 0.3636 23 8 7.3571 2.1643 0.1327 24 6 8.3027 0.9322 -1.7380 25 6 7.7113 -0.2447 -2.5258 26 6 6.7828 -1.0154 -1.5741 27 1 7.2122 -1.9593 -1.2383 28 6 5.4138 -1.2028 -2.2518 29 1 -0.3633 -1.0228 0.1003 30 1 -0.3633 0.5983 0.8355 31 1 -0.3633 0.4244 -0.9360 32 1 2.9741 -0.1033 4.2438 33 1 0.7376 -2.1444 -1.9993 34 1 2.4630 -2.5818 -1.9863 35 1 1.5296 -2.5968 -0.4708 36 1 5.6370 1.6587 -1.4436 37 1 4.6568 1.0694 -0.0708 38 1 8.0977 2.7818 0.2058 39 1 8.0149 1.8737 -2.2059 40 1 9.3892 0.8513 -1.7055 41 1 8.5120 -0.8983 -2.8718 42 1 7.1418 0.1284 -3.3770 43 1 4.9809 -2.1570 -1.9514 44 1 5.5314 -1.1750 -3.3350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364955511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:41 Heat of formation + Delta-G solvation = -149.567065 kcal Electronic energy + Delta-G solvation = -27522.882150 eV Core-core repulsion = 23793.661661 eV Total energy + Delta-G solvation = -3729.220489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14745 -38.46927 -38.01417 -37.47391 -37.00461 -34.82357 -34.50614 -31.71177 -30.97688 -29.87954 -27.35354 -27.03150 -26.66291 -23.92744 -22.41489 -21.43107 -20.63004 -19.99376 -19.32073 -18.70735 -18.44241 -18.02132 -17.42800 -17.07369 -16.37705 -15.76886 -15.56266 -15.07767 -14.88896 -14.69632 -14.53619 -14.42143 -14.37265 -14.09056 -13.95216 -13.56094 -13.45381 -13.34923 -13.13917 -13.08542 -13.07425 -12.92658 -12.61241 -12.56105 -12.50531 -12.10666 -11.87028 -11.81664 -11.71240 -11.59415 -11.32006 -11.20571 -10.81798 -10.76448 -9.99661 -9.70645 -8.33480 -6.34968 -0.44973 1.26556 1.33853 1.40610 1.88147 2.27789 2.47416 3.00990 3.05750 3.22883 3.44973 3.59376 3.86467 3.98988 4.17331 4.23075 4.26611 4.35361 4.39370 4.48191 4.53730 4.57992 4.67858 4.73310 4.77839 4.81962 4.87082 4.91863 4.96206 5.04030 5.08043 5.09953 5.13881 5.16225 5.26654 5.38088 5.40036 5.44052 5.49464 5.54968 5.93710 6.32084 6.70013 6.97122 7.29878 8.81405 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.007258 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.663982 B = 3857.079808 C = 5091.700637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.234 3.766 3 H 0.037 0.963 4 C -0.506 4.506 5 H 0.061 0.939 6 C 0.041 3.959 7 N -0.927 5.927 8 Si 0.892 3.108 9 H -0.271 1.271 10 H -0.252 1.252 11 H -0.277 1.277 12 N -0.993 5.993 13 C 0.101 3.899 14 S 2.799 3.201 15 O -0.995 6.995 16 O -1.013 7.013 17 N -1.016 6.016 18 C 0.146 3.854 19 C -0.097 4.097 20 H 0.081 0.919 21 C 0.109 3.891 22 H 0.082 0.918 23 O -0.587 6.587 24 C -0.148 4.148 25 C -0.113 4.113 26 C -0.082 4.082 27 H 0.126 0.874 28 C 0.117 3.883 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.267 0.733 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.394 0.606 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 -0.777 -10.364 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.079 0.921 6 C -0.159 4.159 7 N -0.566 5.566 8 Si 0.717 3.283 9 H -0.197 1.197 10 H -0.176 1.176 11 H -0.203 1.203 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.811 3.189 15 O -0.979 6.979 16 O -0.998 6.998 17 N -0.857 5.857 18 C 0.021 3.979 19 C -0.118 4.118 20 H 0.099 0.901 21 C 0.050 3.950 22 H 0.100 0.900 23 O -0.395 6.395 24 C -0.186 4.186 25 C -0.150 4.150 26 C -0.102 4.102 27 H 0.144 0.856 28 C -0.008 4.008 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.526 -0.514 -11.005 15.944 hybrid contribution 0.281 1.036 1.012 1.476 sum 11.807 0.523 -9.993 15.477 Atomic orbital electron populations 1.22120 0.96137 1.02064 0.99933 1.18932 0.93163 0.91813 0.83150 0.94484 1.21273 1.42711 0.95037 0.95536 0.92072 1.25419 0.94343 1.00814 0.95347 1.69952 1.46670 1.37069 1.02943 0.86599 0.80267 0.83492 0.77974 1.19699 1.17593 1.20252 1.57854 1.64877 1.22685 1.38015 1.21396 1.00707 0.80220 1.02098 1.01157 0.72140 0.72592 0.73037 1.93517 1.86231 1.76157 1.42036 1.93515 1.84526 1.34401 1.87320 1.58747 1.28527 1.37360 1.61057 1.21373 0.92755 0.92710 0.91089 1.22710 0.93857 0.95955 0.99234 0.90065 1.22343 0.94322 0.82950 0.95425 0.90037 1.86603 1.39869 1.23121 1.89914 1.22667 1.01767 0.99477 0.94670 1.22049 0.98954 0.96721 0.97325 1.22627 0.94168 0.99721 0.93667 0.85648 1.21967 0.90577 0.88725 0.99484 0.91655 0.93009 0.93654 0.92352 0.91991 0.91002 0.90892 0.91408 0.94888 0.75636 0.91532 0.88569 0.88473 0.92028 0.91340 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.09 71.98 0.65 -5.33 16 2 C 0.23 11.08 2.25 44.25 0.10 11.18 16 3 H 0.04 1.90 4.14 -2.39 -0.01 1.89 16 4 C -0.51 -26.92 8.73 25.60 0.22 -26.69 16 5 H 0.06 3.47 6.82 -2.91 -0.02 3.45 16 6 C 0.04 2.29 5.47 84.66 0.46 2.76 16 7 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 8 Si 0.89 44.28 26.87 68.60 1.84 46.13 16 9 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.25 -12.08 6.70 99.48 0.67 -11.41 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 N -0.99 -41.33 3.12 -520.44 -1.62 -42.95 16 13 C 0.10 3.49 9.45 127.77 1.21 4.70 16 14 S 2.80 115.13 6.29 -56.49 -0.36 114.78 16 15 O -1.00 -40.50 16.77 -128.00 -2.15 -42.65 16 16 O -1.01 -48.18 16.26 -128.00 -2.08 -50.26 16 17 N -1.02 -36.42 3.74 -510.80 -1.91 -38.33 16 18 C 0.15 5.40 5.60 86.69 0.49 5.89 16 19 C -0.10 -2.81 3.93 -9.44 -0.04 -2.85 16 20 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.11 2.40 3.88 31.04 0.12 2.52 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 O -0.59 -15.12 11.97 -148.98 -1.78 -16.90 16 24 C -0.15 -2.45 6.24 30.95 0.19 -2.26 16 25 C -0.11 -1.91 6.15 30.98 0.19 -1.72 16 26 C -0.08 -1.77 3.94 -9.53 -0.04 -1.81 16 27 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 28 C 0.12 3.16 6.35 86.65 0.55 3.71 16 29 H 0.06 2.54 7.86 -2.39 -0.02 2.52 16 30 H 0.05 2.17 7.88 -2.39 -0.02 2.15 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 35 H 0.07 2.63 6.56 -2.39 -0.02 2.62 16 36 H 0.07 2.45 7.11 -2.38 -0.02 2.44 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.39 5.97 9.11 -74.05 -0.67 5.30 16 39 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.18 7.29 -2.39 -0.02 1.16 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.98 7.42 -2.39 -0.02 1.96 16 Total: -1.00 -71.95 352.58 -3.36 -75.31 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.29 Total: 19.08 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.11 Total: -9.90 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -3.23 Total: -135.58 kcal Atomic # 8 Polarization: -103.80 SS G_CDS: -6.01 Total: -109.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.84 Total: 46.13 kcal Atomic # 16 Polarization: 115.13 SS G_CDS: -0.36 Total: 114.78 kcal Total: -71.95 -3.36 -75.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364955511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.258 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds