Wall clock time and date at job start Tue Mar 31 2020 12:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 N 1.65605 * 107.21223 * 90.00055 * 14 12 2 18 18 C 1.46839 * 125.35213 * 269.71209 * 17 14 12 19 19 C 1.54116 * 106.35596 * 161.26500 * 18 17 14 20 20 H 1.08997 * 113.25135 * 267.33527 * 19 18 17 21 21 C 1.53739 * 109.46965 * 140.90976 * 19 18 17 22 22 H 1.09000 * 110.12561 * 159.25096 * 21 19 18 23 23 O 1.42893 * 110.12475 * 37.63730 * 21 19 18 24 24 C 1.53605 * 106.10966 * 278.47681 * 21 19 18 25 25 C 1.53477 * 107.19994 * 341.93259 * 24 21 19 26 26 C 1.53673 * 107.43170 * 0.20653 * 25 24 21 27 27 H 1.08998 * 112.77040 * 254.29240 * 26 25 24 28 28 C 1.46707 * 125.35185 * 90.02783 * 17 14 12 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 36 36 H 1.09004 * 110.06615 * 280.63091 * 18 17 14 37 37 H 1.09001 * 110.06059 * 42.13994 * 18 17 14 38 38 H 0.96707 * 114.00325 * 179.97438 * 23 21 19 39 39 H 1.09001 * 109.89259 * 101.32431 * 24 21 19 40 40 H 1.08999 * 109.89316 * 222.36452 * 24 21 19 41 41 H 1.09004 * 109.85460 * 240.73828 * 25 24 21 42 42 H 1.09000 * 109.85813 * 119.67111 * 25 24 21 43 43 H 1.08996 * 109.79288 * 299.66345 * 28 17 14 44 44 H 1.09006 * 109.79275 * 60.49783 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3997 18 6 1.3839 2.1556 3.3000 19 6 0.1810 2.1849 4.2629 20 1 -0.7620 1.9261 3.7814 21 6 0.1252 3.5479 4.9719 22 1 -0.8782 3.7294 5.3572 23 8 0.4996 4.5884 4.0670 24 6 1.1310 3.4674 6.1300 25 6 1.4166 1.9804 6.3806 26 6 0.5858 1.1752 5.3691 27 1 -0.2764 0.6880 5.8244 28 6 1.5070 0.1781 4.6442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 2.1216 2.9013 3.5964 37 1 1.0497 2.3445 2.2799 38 1 0.4833 5.4734 4.4567 39 1 2.0528 3.9812 5.8571 40 1 0.7041 3.9215 7.0243 41 1 1.1242 1.7132 7.3961 42 1 2.4774 1.7772 6.2334 43 1 0.9563 -0.7343 4.4160 44 1 2.3656 -0.0559 5.2737 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364955649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:46 Heat of formation + Delta-G solvation = -122.862587 kcal Electronic energy + Delta-G solvation = -27002.129647 eV Core-core repulsion = 23274.067151 eV Total energy + Delta-G solvation = -3728.062496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.23433 -36.64829 -36.52051 -36.09896 -35.15958 -33.85341 -32.53792 -30.00245 -29.04604 -28.95015 -25.74416 -25.53220 -25.09725 -22.80581 -20.71924 -20.58212 -19.68797 -18.41311 -17.36747 -17.24497 -16.91090 -16.40955 -16.15477 -15.28929 -14.91791 -14.57815 -14.13889 -13.71716 -13.62408 -13.42621 -13.11667 -13.02185 -12.81394 -12.76356 -12.28946 -11.97031 -11.80288 -11.68843 -11.51541 -11.38578 -11.32487 -11.18752 -10.99367 -10.94571 -10.85382 -10.76495 -10.68213 -10.48714 -10.41171 -10.23263 -10.04497 -9.97509 -9.21063 -8.68961 -8.41628 -7.91488 -6.03536 -4.09898 1.20251 3.30285 3.38307 3.42699 3.55445 3.91024 4.11404 4.20647 4.37302 4.43612 4.65716 4.87654 4.94660 5.11704 5.15933 5.21459 5.27771 5.34653 5.44067 5.48019 5.61197 5.70022 5.74293 5.79106 5.82250 5.94686 6.08738 6.14199 6.17890 6.28703 6.35036 6.47980 6.60648 6.70539 6.82879 6.86917 7.06958 7.51429 7.54528 7.68128 7.83292 8.08290 8.31871 8.92617 9.55735 11.02219 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.004489 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.853268 B = 6236.546657 C = 6888.494626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.790 3.210 15 O -0.994 6.994 16 O -0.968 6.968 17 N -1.021 6.021 18 C 0.143 3.857 19 C -0.090 4.090 20 H 0.097 0.903 21 C 0.109 3.891 22 H 0.061 0.939 23 O -0.557 6.557 24 C -0.157 4.157 25 C -0.115 4.115 26 C -0.095 4.095 27 H 0.098 0.902 28 C 0.129 3.871 29 H 0.010 0.990 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.262 0.738 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.376 0.624 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 3.554 18.580 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.035 4.035 14 S 2.801 3.199 15 O -0.978 6.978 16 O -0.952 6.952 17 N -0.860 5.860 18 C 0.018 3.982 19 C -0.110 4.110 20 H 0.116 0.884 21 C 0.050 3.950 22 H 0.079 0.921 23 O -0.362 6.362 24 C -0.195 4.195 25 C -0.153 4.153 26 C -0.115 4.115 27 H 0.116 0.884 28 C 0.003 3.997 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.223 0.777 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.034 3.177 17.965 18.684 hybrid contribution -0.278 -0.038 -0.477 0.554 sum -4.312 3.139 17.488 18.283 Atomic orbital electron populations 1.22105 0.98306 0.99621 1.00580 1.18738 0.91292 0.92994 0.80542 0.92396 1.21375 1.31442 1.12941 0.90040 0.91940 1.24906 0.94996 0.95016 0.98983 1.69869 1.36670 1.22720 1.23628 0.86448 0.78586 0.79681 0.82736 1.19744 1.21018 1.20897 1.57800 1.70094 1.19717 1.35610 1.21124 1.01634 0.82162 0.98594 1.01658 0.73416 0.72874 0.71927 1.93522 1.69029 1.60375 1.74854 1.93599 1.73680 1.56001 1.71923 1.59218 1.67420 1.25276 1.34067 1.21422 0.93901 0.82829 1.00067 1.22684 0.99664 0.92664 0.95967 0.88447 1.22247 0.96254 0.87777 0.88753 0.92123 1.86631 1.91459 1.17930 1.40207 1.22719 1.00462 0.97649 0.98631 1.22020 1.00621 0.93948 0.98716 1.22573 0.97941 0.95655 0.95304 0.88420 1.21589 0.97291 0.95324 0.85489 0.97053 0.94851 0.88919 0.92783 0.93321 0.93511 0.91045 0.91072 0.90583 0.77727 0.90605 0.91542 0.91480 0.90982 0.92067 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.71 2.62 -69.08 -0.18 6.53 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.06 1.72 7.65 -52.49 -0.40 1.32 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.99 -21.41 3.12 -115.85 -0.36 -21.77 16 13 C 0.11 2.06 9.53 59.85 0.57 2.63 16 14 S 2.79 58.34 6.29 -107.50 -0.68 57.66 16 15 O -0.99 -21.55 16.77 -57.18 -0.96 -22.51 16 16 O -0.97 -23.87 16.26 -57.18 -0.93 -24.80 16 17 N -1.02 -16.82 3.74 -112.81 -0.42 -17.24 16 18 C 0.14 2.23 5.60 -3.27 -0.02 2.22 16 19 C -0.09 -1.05 3.93 -88.52 -0.35 -1.40 16 20 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 21 C 0.11 1.04 3.88 -26.03 -0.10 0.94 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 O -0.56 -5.97 11.97 -35.23 -0.42 -6.39 16 24 C -0.16 -1.30 6.25 -26.17 -0.16 -1.46 16 25 C -0.12 -1.01 6.15 -26.13 -0.16 -1.17 16 26 C -0.09 -0.94 3.94 -88.67 -0.35 -1.29 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 C 0.13 1.65 6.35 -3.46 -0.02 1.63 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.73 7.79 -51.92 -0.40 0.32 16 35 H 0.07 1.27 6.43 -51.93 -0.33 0.93 16 36 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.38 2.30 9.11 45.56 0.42 2.71 16 39 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -33.81 353.25 -9.90 -43.71 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.23 Total: 1.44 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.82 Total: -7.35 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.16 Total: -63.54 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.31 Total: -53.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 58.34 SS G_CDS: -0.68 Total: 57.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.81 -9.90 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364955649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.157 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds