Wall clock time and date at job start Tue Mar 31 2020 12:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 N 1.65605 * 107.21223 * 90.00055 * 14 12 2 18 18 C 1.46839 * 125.35213 * 269.71209 * 17 14 12 19 19 C 1.54116 * 106.35596 * 161.26500 * 18 17 14 20 20 H 1.08997 * 113.25135 * 267.33527 * 19 18 17 21 21 C 1.53739 * 109.46965 * 140.90976 * 19 18 17 22 22 H 1.09000 * 110.12561 * 159.25096 * 21 19 18 23 23 O 1.42893 * 110.12475 * 37.63730 * 21 19 18 24 24 C 1.53605 * 106.10966 * 278.47681 * 21 19 18 25 25 C 1.53477 * 107.19994 * 341.93259 * 24 21 19 26 26 C 1.53673 * 107.43170 * 0.20653 * 25 24 21 27 27 H 1.08998 * 112.77040 * 254.29240 * 26 25 24 28 28 C 1.46707 * 125.35185 * 90.02783 * 17 14 12 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 36 36 H 1.09004 * 110.06615 * 280.63091 * 18 17 14 37 37 H 1.09001 * 110.06059 * 42.13994 * 18 17 14 38 38 H 0.96707 * 114.00325 * 179.97438 * 23 21 19 39 39 H 1.09001 * 109.89259 * 101.32431 * 24 21 19 40 40 H 1.08999 * 109.89316 * 222.36452 * 24 21 19 41 41 H 1.09004 * 109.85460 * 240.73828 * 25 24 21 42 42 H 1.09000 * 109.85813 * 119.67111 * 25 24 21 43 43 H 1.08996 * 109.79288 * 299.66345 * 28 17 14 44 44 H 1.09006 * 109.79275 * 60.49783 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3997 18 6 1.3839 2.1556 3.3000 19 6 0.1810 2.1849 4.2629 20 1 -0.7620 1.9261 3.7814 21 6 0.1252 3.5479 4.9719 22 1 -0.8782 3.7294 5.3572 23 8 0.4996 4.5884 4.0670 24 6 1.1310 3.4674 6.1300 25 6 1.4166 1.9804 6.3806 26 6 0.5858 1.1752 5.3691 27 1 -0.2764 0.6880 5.8244 28 6 1.5070 0.1781 4.6442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 2.1216 2.9013 3.5964 37 1 1.0497 2.3445 2.2799 38 1 0.4833 5.4734 4.4567 39 1 2.0528 3.9812 5.8571 40 1 0.7041 3.9215 7.0243 41 1 1.1242 1.7132 7.3961 42 1 2.4774 1.7772 6.2334 43 1 0.9563 -0.7343 4.4160 44 1 2.3656 -0.0559 5.2737 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364955649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:45 Heat of formation + Delta-G solvation = -149.458619 kcal Electronic energy + Delta-G solvation = -27003.282937 eV Core-core repulsion = 23274.067151 eV Total energy + Delta-G solvation = -3729.215786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12630 -38.41073 -37.92110 -37.42934 -36.95170 -34.79674 -34.55319 -31.03329 -30.86816 -29.85814 -27.32100 -27.03480 -26.62880 -23.92124 -22.51732 -21.40848 -20.58967 -19.95882 -18.88052 -18.70348 -18.21272 -17.95013 -17.35783 -17.00267 -16.45620 -15.76027 -15.41935 -15.08577 -14.94166 -14.69026 -14.59601 -14.36900 -14.07061 -13.91376 -13.76210 -13.42559 -13.28398 -13.20533 -13.05563 -13.01989 -12.91301 -12.82406 -12.61966 -12.53497 -12.24771 -12.17681 -11.93439 -11.84857 -11.69501 -11.57021 -11.19929 -11.16544 -10.76112 -10.53483 -9.98985 -9.68220 -8.13508 -6.27788 -0.44058 1.39917 1.42495 1.53563 2.00311 2.41160 2.54936 3.05301 3.14411 3.25046 3.49276 3.62911 3.90512 4.03759 4.20094 4.25358 4.29662 4.37734 4.48367 4.56526 4.60000 4.64758 4.78597 4.81020 4.89766 4.95188 4.96893 4.98660 5.05320 5.08640 5.12661 5.13732 5.18901 5.19248 5.39301 5.40747 5.51112 5.59283 5.76128 5.85472 6.11383 6.27592 6.79844 7.01183 7.41340 8.91095 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.004489 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.853268 B = 6236.546657 C = 6888.494626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.274 3.726 3 H 0.018 0.982 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.997 5.997 13 C 0.105 3.895 14 S 2.803 3.197 15 O -1.004 7.004 16 O -1.016 7.016 17 N -1.017 6.017 18 C 0.141 3.859 19 C -0.092 4.092 20 H 0.100 0.900 21 C 0.110 3.890 22 H 0.088 0.912 23 O -0.586 6.586 24 C -0.152 4.152 25 C -0.117 4.117 26 C -0.081 4.081 27 H 0.133 0.867 28 C 0.114 3.886 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.394 0.606 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 2.788 20.757 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.036 0.964 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.839 5.839 13 C -0.040 4.040 14 S 2.815 3.185 15 O -0.988 6.988 16 O -1.000 7.000 17 N -0.858 5.858 18 C 0.016 3.984 19 C -0.112 4.112 20 H 0.119 0.881 21 C 0.050 3.950 22 H 0.106 0.894 23 O -0.394 6.394 24 C -0.190 4.190 25 C -0.154 4.154 26 C -0.100 4.100 27 H 0.151 0.849 28 C -0.011 4.011 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.604 2.396 20.159 21.060 hybrid contribution 0.236 0.243 -1.089 1.140 sum -5.368 2.639 19.070 19.986 Atomic orbital electron populations 1.21875 0.96662 1.00231 1.00309 1.18395 0.92381 0.91049 0.81246 0.96402 1.21665 1.31731 1.13025 0.91466 0.92617 1.25664 0.95157 0.95704 1.01728 1.69987 1.37291 1.23671 1.24362 0.85515 0.78337 0.78544 0.79281 1.19444 1.19700 1.20958 1.57691 1.70042 1.21079 1.35072 1.21339 1.01739 0.80181 1.00782 1.00962 0.73545 0.72107 0.71920 1.93494 1.69764 1.60682 1.74823 1.93530 1.75388 1.57568 1.73507 1.58820 1.66919 1.25666 1.34413 1.21469 0.95509 0.81944 0.99521 1.22763 0.97589 0.95195 0.95692 0.88129 1.22350 0.98008 0.86206 0.88390 0.89401 1.86587 1.91725 1.19489 1.41624 1.22693 0.99674 0.97418 0.99191 1.22062 0.99438 0.94054 0.99895 1.22645 0.98428 0.94434 0.94544 0.84894 1.22021 0.98409 0.96679 0.83995 0.94930 0.93622 0.91493 0.92571 0.94035 0.90280 0.90206 0.92074 0.93868 0.75610 0.92097 0.88764 0.88677 0.92757 0.90622 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.95 71.98 0.64 -5.46 16 2 C 0.27 14.15 2.62 44.25 0.12 14.26 16 3 H 0.02 1.07 6.91 -2.39 -0.02 1.06 16 4 C -0.54 -30.34 8.37 25.60 0.21 -30.12 16 5 H 0.06 3.13 7.65 -2.91 -0.02 3.10 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.91 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 N -1.00 -43.66 3.12 -520.44 -1.62 -45.29 16 13 C 0.10 3.78 9.53 127.77 1.22 5.00 16 14 S 2.80 120.00 6.29 -56.49 -0.36 119.64 16 15 O -1.00 -43.57 16.77 -128.00 -2.15 -45.72 16 16 O -1.02 -52.88 16.26 -128.00 -2.08 -54.96 16 17 N -1.02 -33.47 3.74 -510.81 -1.91 -35.38 16 18 C 0.14 4.48 5.60 86.69 0.49 4.97 16 19 C -0.09 -1.98 3.93 -9.43 -0.04 -2.02 16 20 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 21 C 0.11 1.81 3.88 31.05 0.12 1.93 16 22 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 23 O -0.59 -12.10 11.97 -148.98 -1.78 -13.88 16 24 C -0.15 -2.08 6.25 30.96 0.19 -1.89 16 25 C -0.12 -1.68 6.15 30.98 0.19 -1.49 16 26 C -0.08 -1.33 3.94 -9.53 -0.04 -1.37 16 27 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 28 C 0.11 2.66 6.35 86.64 0.55 3.21 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.96 6.66 -2.39 -0.02 1.94 16 31 H 0.07 3.48 6.07 -2.38 -0.01 3.47 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 2.30 7.79 -2.38 -0.02 2.28 16 35 H 0.08 2.72 6.43 -2.39 -0.02 2.70 16 36 H 0.06 2.04 7.11 -2.38 -0.02 2.02 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.39 4.37 9.11 -74.05 -0.67 3.70 16 39 H 0.06 1.02 8.01 -2.39 -0.02 1.00 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.05 0.98 7.29 -2.39 -0.02 0.97 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.66 7.42 -2.38 -0.02 1.65 16 Total: -1.00 -75.70 353.25 -3.20 -78.90 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.33 Total: 14.34 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.11 Total: -11.56 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -3.29 Total: -133.16 kcal Atomic # 8 Polarization: -108.54 SS G_CDS: -6.01 Total: -114.55 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 120.00 SS G_CDS: -0.36 Total: 119.64 kcal Total: -75.70 -3.20 -78.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364955649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.560 kcal (2) G-P(sol) polarization free energy of solvation -75.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds